RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 HOXB7P09629 217 aa18■□□□□ 0.47
SQSTM1-208ENST00000485412 ZNF853P0CG23 659 aa18■□□□□ 0.47
SQSTM1-208ENST00000485412 GPSM2P81274 684 aa18■□□□□ 0.47
SQSTM1-208ENST00000485412 SF3B3Q15393 1217 aaKnown RBP18■□□□□ 0.47
SQSTM1-208ENST00000485412 C2orf69Q8N8R5 385 aa18■□□□□ 0.47
SQSTM1-208ENST00000485412 DCPSQ96C86 337 aaKnown RBP18■□□□□ 0.47
SQSTM1-208ENST00000485412 GBA2Q9HCG7 927 aaPredicted RBP18■□□□□ 0.47
SQSTM1-208ENST00000485412 POLLQ9UGP5 575 aa18■□□□□ 0.47
SQSTM1-208ENST00000485412 APAF1O14727 1248 aa17.99■□□□□ 0.47
SQSTM1-208ENST00000485412 RBM26Q5T8P6 1007 aaKnown RBP17.99■□□□□ 0.47
SQSTM1-208ENST00000485412 JARID2Q92833 1246 aaPredicted RBP17.99■□□□□ 0.47
SQSTM1-208ENST00000485412 PRKRIP1Q9H875 184 aaPredicted RBP17.99■□□□□ 0.47
SQSTM1-208ENST00000485412 PSME4Q14997 1843 aa17.98■□□□□ 0.47
SQSTM1-208ENST00000485412 ADM5C9JUS6 153 aa17.98■□□□□ 0.47
SQSTM1-208ENST00000485412 IRS4O14654 1257 aaPredicted RBP17.98■□□□□ 0.47
SQSTM1-208ENST00000485412 RPS12P25398 132 aaKnown RBP17.98■□□□□ 0.47
SQSTM1-208ENST00000485412 CCDC102AQ96A19 550 aa17.98■□□□□ 0.47
SQSTM1-208ENST00000485412 EYA3Q99504 573 aa17.98■□□□□ 0.47
SQSTM1-208ENST00000485412 SEC31BQ9NQW1 1179 aa17.98■□□□□ 0.47
SQSTM1-208ENST00000485412 HYPKQ9NX55 129 aa17.98■□□□□ 0.47
SQSTM1-208ENST00000485412 RTL9Q8NET4 1388 aa17.98■□□□□ 0.47
SQSTM1-208ENST00000485412 FAM155AB1AL88 458 aaPredicted RBP17.97■□□□□ 0.47
SQSTM1-208ENST00000485412 ECE2O60344 883 aa17.97■□□□□ 0.47
SQSTM1-208ENST00000485412 ZNF157P51786 506 aaPredicted RBP17.97■□□□□ 0.47
SQSTM1-208ENST00000485412 KIF23Q02241 960 aaPredicted RBP17.97■□□□□ 0.47
SQSTM1-208ENST00000485412 DOK7Q18PE1 504 aa17.97■□□□□ 0.47
SQSTM1-208ENST00000485412 SAGE1Q9NXZ1 904 aa17.97■□□□□ 0.47
SQSTM1-208ENST00000485412 C8orf58Q8NAV2 365 aa17.96■□□□□ 0.47
SQSTM1-208ENST00000485412 PDE4DIPQ5VU43 2346 aa17.96■□□□□ 0.47
SQSTM1-208ENST00000485412 MYH3P11055 1940 aa17.96■□□□□ 0.47
SQSTM1-208ENST00000485412 TRIM28Q13263 835 aaKnown RBP17.95■□□□□ 0.46
SQSTM1-208ENST00000485412 KIF4BQ2VIQ3 1234 aa17.95■□□□□ 0.46
SQSTM1-208ENST00000485412 RIC3Q7Z5B4 369 aa17.95■□□□□ 0.46
SQSTM1-208ENST00000485412 SULF1Q8IWU6 871 aa17.95■□□□□ 0.46
SQSTM1-208ENST00000485412 TBC1D16Q8TBP0 767 aa17.95■□□□□ 0.46
SQSTM1-208ENST00000485412 CCDC85AQ96PX6 553 aaPredicted RBP17.95■□□□□ 0.46
SQSTM1-208ENST00000485412 MYD88Q99836 296 aa17.95■□□□□ 0.46
SQSTM1-208ENST00000485412 ZNF646O15015 1829 aaPredicted RBP17.95■□□□□ 0.46
SQSTM1-208ENST00000485412 G3V3G9 751 aa17.94■□□□□ 0.46
SQSTM1-208ENST00000485412 TRPA1O75762 1119 aa17.94■□□□□ 0.46
SQSTM1-208ENST00000485412 DCAF8Q5TAQ9 597 aa17.94■□□□□ 0.46
SQSTM1-208ENST00000485412 IFT57Q9NWB7 429 aa17.94■□□□□ 0.46
SQSTM1-208ENST00000485412 RNF186Q9NXI6 227 aa17.94■□□□□ 0.46
SQSTM1-208ENST00000485412 GGA3Q9NZ52 723 aa17.94■□□□□ 0.46
SQSTM1-208ENST00000485412 TNRC18O15417 2968 aaPredicted RBP17.93■□□□□ 0.46
SQSTM1-208ENST00000485412 SOX10P56693 466 aa17.93■□□□□ 0.46
SQSTM1-208ENST00000485412 RPS8P62241 208 aaKnown RBP17.93■□□□□ 0.46
SQSTM1-208ENST00000485412 CCDC184Q52MB2 194 aa17.93■□□□□ 0.46
SQSTM1-208ENST00000485412 TSPYL6Q8N831 410 aa17.93■□□□□ 0.46
SQSTM1-208ENST00000485412 ZBTB38Q8NAP3 1195 aaPredicted RBP17.93■□□□□ 0.46
SQSTM1-208ENST00000485412 ZC3H12CQ9C0D7 883 aaKnown RBP17.93■□□□□ 0.46
SQSTM1-208ENST00000485412 PCDH10Q9P2E7 1040 aa17.93■□□□□ 0.46
SQSTM1-208ENST00000485412 ASTN2O75129 1339 aaPredicted RBP17.93■□□□□ 0.46
SQSTM1-208ENST00000485412 WTIPA6NIX2 430 aaPredicted RBP17.92■□□□□ 0.46
SQSTM1-208ENST00000485412 SLC10A3P09131 477 aa17.92■□□□□ 0.46
SQSTM1-208ENST00000485412 GOLGA2Q08379 1002 aa17.92■□□□□ 0.46
SQSTM1-208ENST00000485412 CDCA5Q96FF9 252 aa17.91■□□□□ 0.46
SQSTM1-208ENST00000485412 UFL1O94874 794 aa17.9■□□□□ 0.46
SQSTM1-208ENST00000485412 VIL1P09327 827 aaKnown RBP17.9■□□□□ 0.46
SQSTM1-208ENST00000485412 GNAI1P63096 354 aa17.9■□□□□ 0.46
SQSTM1-208ENST00000485412 ANKIB1Q9P2G1 1089 aa17.9■□□□□ 0.46
SQSTM1-208ENST00000485412 PCCAP05165 728 aaPredicted RBP17.89■□□□□ 0.45
SQSTM1-208ENST00000485412 CTU1Q7Z7A3 348 aaKnown RBP17.89■□□□□ 0.45
SQSTM1-208ENST00000485412 REM2Q8IYK8 340 aaPredicted RBP17.89■□□□□ 0.45
SQSTM1-208ENST00000485412 TSR2Q969E8 191 aaKnown RBP17.89■□□□□ 0.45
SQSTM1-208ENST00000485412 CSRNP1Q96S65 589 aa17.89■□□□□ 0.45
SQSTM1-208ENST00000485412 PODXL2Q9NZ53 605 aa17.89■□□□□ 0.45
SQSTM1-208ENST00000485412 ANGEL2Q5VTE6 544 aaKnown RBP17.88■□□□□ 0.45
SQSTM1-208ENST00000485412 RASAL3Q86YV0 1011 aa17.88■□□□□ 0.45
SQSTM1-208ENST00000485412 CCDC191Q8NCU4 936 aa17.88■□□□□ 0.45
SQSTM1-208ENST00000485412 METTL22Q9BUU2 404 aaPredicted RBP17.88■□□□□ 0.45
SQSTM1-208ENST00000485412 CWC25Q9NXE8 425 aaPredicted RBP17.88■□□□□ 0.45
SQSTM1-208ENST00000485412 GGA1Q9UJY5 639 aa17.88■□□□□ 0.45
SQSTM1-208ENST00000485412 MAP3K2Q9Y2U5 619 aa17.88■□□□□ 0.45
SQSTM1-208ENST00000485412 PAPPA2Q9BXP8 1791 aa17.88■□□□□ 0.45
SQSTM1-208ENST00000485412 PDE8AO60658 829 aa17.87■□□□□ 0.45
SQSTM1-208ENST00000485412 IGKV5-2P06315 115 aa17.87■□□□□ 0.45
SQSTM1-208ENST00000485412 HSP90B1P14625 803 aaKnown RBP17.87■□□□□ 0.45
SQSTM1-208ENST00000485412 SCARF1Q14162 830 aa17.87■□□□□ 0.45
SQSTM1-208ENST00000485412 ZNF280AP59817 542 aaPredicted RBP17.86■□□□□ 0.45
SQSTM1-208ENST00000485412 CCDC152Q4G0S7 254 aa17.86■□□□□ 0.45
SQSTM1-208ENST00000485412 RSBN1LQ6PCB5 846 aaPredicted RBP17.86■□□□□ 0.45
SQSTM1-208ENST00000485412 G2E3Q7L622 706 aa17.86■□□□□ 0.45
SQSTM1-208ENST00000485412 AGBL3Q8NEM8 1001 aa17.86■□□□□ 0.45
SQSTM1-208ENST00000485412 FKBP1BP68106 108 aa17.85■□□□□ 0.45
SQSTM1-208ENST00000485412 CWF19L2Q2TBE0 894 aaKnown RBP17.85■□□□□ 0.45
SQSTM1-208ENST00000485412 SCAF8Q9UPN6 1271 aaKnown RBP17.85■□□□□ 0.45
SQSTM1-208ENST00000485412 ZNF609O15014 1411 aa17.84■□□□□ 0.45
SQSTM1-208ENST00000485412 PI4KAP2A4QPH2 592 aa17.84■□□□□ 0.45
SQSTM1-208ENST00000485412 CTSWP56202 376 aa17.84■□□□□ 0.45
SQSTM1-208ENST00000485412 CALD1Q05682 793 aaKnown RBP17.84■□□□□ 0.45
SQSTM1-208ENST00000485412 CCDC30Q5VVM6 783 aa17.84■□□□□ 0.45
SQSTM1-208ENST00000485412 PI4KAP1Q8N8J0 262 aa17.84■□□□□ 0.45
SQSTM1-208ENST00000485412 MYOZ2Q9NPC6 264 aa17.84■□□□□ 0.45
SQSTM1-208ENST00000485412 HDAC9Q9UKV0 1011 aa17.84■□□□□ 0.45
SQSTM1-208ENST00000485412 A0A1B0GUL6 1792 aa17.84■□□□□ 0.45
SQSTM1-208ENST00000485412 PITPNM2Q9BZ72 1349 aa17.83■□□□□ 0.44
SQSTM1-208ENST00000485412 USP17L8P0C7I0 530 aa17.83■□□□□ 0.44
SQSTM1-208ENST00000485412 GMLQ99445 158 aa17.83■□□□□ 0.44
SQSTM1-208ENST00000485412 MXD3Q9BW11 206 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms