RNA–Protein interactions for RNA: ENST00000483690.1

MCF2-207, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

TSL 3

Gene MCF2, Length 752 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-207ENST00000483690 KIAA0319Q5VV43 1072 aa12.16□□□□□ -0.46
MCF2-207ENST00000483690 NXPE4Q6UWF7 544 aa12.16□□□□□ -0.46
MCF2-207ENST00000483690 NCAPG2Q86XI2 1143 aa12.16□□□□□ -0.46
MCF2-207ENST00000483690 METTL5Q9NRN9 209 aaKnown RBP12.16□□□□□ -0.46
MCF2-207ENST00000483690 CTSHP09668 335 aa12.15□□□□□ -0.46
MCF2-207ENST00000483690 CTBSQ01459 385 aa12.15□□□□□ -0.46
MCF2-207ENST00000483690 GRM2Q14416 872 aa12.15□□□□□ -0.46
MCF2-207ENST00000483690 NANOS1Q8WY41 292 aaKnown RBP12.15□□□□□ -0.46
MCF2-207ENST00000483690 EHD4Q9H223 541 aa12.15□□□□□ -0.46
MCF2-207ENST00000483690 LATS2Q9NRM7 1088 aa12.15□□□□□ -0.46
MCF2-207ENST00000483690 PPP4R2Q9NY27 417 aa12.15□□□□□ -0.46
MCF2-207ENST00000483690 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.15□□□□□ -0.46
MCF2-207ENST00000483690 A0A1W2PP55 124 aa12.14□□□□□ -0.47
MCF2-207ENST00000483690 HOXD8P13378 290 aaPredicted RBP12.14□□□□□ -0.47
MCF2-207ENST00000483690 HDLBPQ00341 1268 aaKnown RBP12.14□□□□□ -0.47
MCF2-207ENST00000483690 TRAK1Q9UPV9 953 aa12.14□□□□□ -0.47
MCF2-207ENST00000483690 KIF4AO95239 1232 aa12.13□□□□□ -0.47
MCF2-207ENST00000483690 USP17L7P0C7H9 530 aa12.13□□□□□ -0.47
MCF2-207ENST00000483690 ZNF76P36508 570 aa12.13□□□□□ -0.47
MCF2-207ENST00000483690 PEAR1Q5VY43 1037 aaPredicted RBP12.13□□□□□ -0.47
MCF2-207ENST00000483690 NSUN5Q96P11 429 aaKnown RBP12.13□□□□□ -0.47
MCF2-207ENST00000483690 BMP4P12644 408 aa12.12□□□□□ -0.47
MCF2-207ENST00000483690 ERCC5P28715 1186 aaPredicted RBP12.12□□□□□ -0.47
MCF2-207ENST00000483690 NRLP54845 237 aa12.12□□□□□ -0.47
MCF2-207ENST00000483690 FANCCQ00597 558 aa12.12□□□□□ -0.47
MCF2-207ENST00000483690 COL13A1Q5TAT6 717 aaPredicted RBP12.12□□□□□ -0.47
MCF2-207ENST00000483690 RNF34Q969K3 372 aa12.12□□□□□ -0.47
MCF2-207ENST00000483690 SPACA7Q96KW9 195 aa12.12□□□□□ -0.47
MCF2-207ENST00000483690 C9orf131Q5VYM1 1079 aa12.11□□□□□ -0.47
MCF2-207ENST00000483690 SYT9Q86SS6 491 aa12.11□□□□□ -0.47
MCF2-207ENST00000483690 POTECB2RU33 542 aa12.1□□□□□ -0.47
MCF2-207ENST00000483690 GSTT1P30711 240 aa12.1□□□□□ -0.47
MCF2-207ENST00000483690 PCSK7Q16549 785 aa12.1□□□□□ -0.47
MCF2-207ENST00000483690 ZNF468Q5VIY5 522 aaPredicted RBP12.1□□□□□ -0.47
MCF2-207ENST00000483690 TRPM4Q8TD43 1214 aa12.1□□□□□ -0.47
MCF2-207ENST00000483690 IGFLR1Q9H665 355 aa12.1□□□□□ -0.47
MCF2-207ENST00000483690 LIN7BQ9HAP6 207 aa12.1□□□□□ -0.47
MCF2-207ENST00000483690 GPLD1P80108 840 aa12.09□□□□□ -0.47
MCF2-207ENST00000483690 TBC1D8BQ0IIM8 1120 aa12.09□□□□□ -0.47
MCF2-207ENST00000483690 OSMRQ99650 979 aa12.09□□□□□ -0.47
MCF2-207ENST00000483690 ZKSCAN3Q9BRR0 538 aa12.09□□□□□ -0.47
MCF2-207ENST00000483690 UBE2OQ9C0C9 1292 aaKnown RBP12.09□□□□□ -0.47
MCF2-207ENST00000483690 MX2P20592 715 aa12.08□□□□□ -0.48
MCF2-207ENST00000483690 TAF1CQ15572 869 aaPredicted RBP12.08□□□□□ -0.48
MCF2-207ENST00000483690 PRPF40BQ6NWY9 871 aaKnown RBP12.08□□□□□ -0.48
MCF2-207ENST00000483690 METTL16Q86W50 562 aaKnown RBP12.08□□□□□ -0.48
MCF2-207ENST00000483690 NT5DC4Q86YG4 428 aa12.08□□□□□ -0.48
MCF2-207ENST00000483690 CEP120Q8N960 986 aa12.08□□□□□ -0.48
MCF2-207ENST00000483690 GLIS3Q8NEA6 775 aa12.08□□□□□ -0.48
MCF2-207ENST00000483690 NXF1Q9UBU9 619 aaKnown RBP12.08□□□□□ -0.48
MCF2-207ENST00000483690 USP31Q70CQ4 1352 aa12.07□□□□□ -0.48
MCF2-207ENST00000483690 LOC102724428A0A0B4J2F2 783 aa12.07□□□□□ -0.48
MCF2-207ENST00000483690 SIN3BO75182 1162 aa12.07□□□□□ -0.48
MCF2-207ENST00000483690 SIK1P57059 783 aa12.07□□□□□ -0.48
MCF2-207ENST00000483690 MLLT1Q03111 559 aaPredicted RBP12.07□□□□□ -0.48
MCF2-207ENST00000483690 MEI1Q5TIA1 1274 aa12.07□□□□□ -0.48
MCF2-207ENST00000483690 AVENQ9NQS1 362 aaPredicted RBP12.07□□□□□ -0.48
MCF2-207ENST00000483690 DNAJB12Q9NXW2 375 aaKnown RBP12.07□□□□□ -0.48
MCF2-207ENST00000483690 C2CD2LO14523 706 aa12.06□□□□□ -0.48
MCF2-207ENST00000483690 ACPPP15309 386 aa12.06□□□□□ -0.48
MCF2-207ENST00000483690 ST13P50502 369 aaKnown RBP12.06□□□□□ -0.48
MCF2-207ENST00000483690 FCGRTP55899 365 aa12.06□□□□□ -0.48
MCF2-207ENST00000483690 PCBP4P57723 403 aaKnown RBP12.06□□□□□ -0.48
MCF2-207ENST00000483690 ZC3H6P61129 1189 aaKnown RBP12.06□□□□□ -0.48
MCF2-207ENST00000483690 CNTNAP3BQ96NU0 1288 aa12.06□□□□□ -0.48
MCF2-207ENST00000483690 CNTNAP3Q9BZ76 1288 aa12.06□□□□□ -0.48
MCF2-207ENST00000483690 RBSNQ9H1K0 784 aa12.06□□□□□ -0.48
MCF2-207ENST00000483690 DZANK1Q9NVP4 752 aa12.06□□□□□ -0.48
MCF2-207ENST00000483690 NSFL1CQ9UNZ2 370 aaKnown RBP12.06□□□□□ -0.48
MCF2-207ENST00000483690 ZBTB42B2RXF5 422 aa12.05□□□□□ -0.48
MCF2-207ENST00000483690 GHRHP01286 108 aa12.05□□□□□ -0.48
MCF2-207ENST00000483690 HFE2Q6ZVN8 426 aa12.05□□□□□ -0.48
MCF2-207ENST00000483690 CCNJLQ8IV13 435 aa12.05□□□□□ -0.48
MCF2-207ENST00000483690 C8orf37Q96NL8 207 aa12.05□□□□□ -0.48
MCF2-207ENST00000483690 TCF12Q99081 682 aa12.05□□□□□ -0.48
MCF2-207ENST00000483690 OXCT2Q9BYC2 517 aaPredicted RBP12.05□□□□□ -0.48
MCF2-207ENST00000483690 TMEM238LA0A1B0GVL6 79 aa12.04□□□□□ -0.48
MCF2-207ENST00000483690 J3QW42 95 aa12.04□□□□□ -0.48
MCF2-207ENST00000483690 XRCC5P13010 732 aaKnown RBP12.04□□□□□ -0.48
MCF2-207ENST00000483690 DTHD1Q6ZMT9 781 aa12.04□□□□□ -0.48
MCF2-207ENST00000483690 HS2ST1Q7LGA3 356 aa12.04□□□□□ -0.48
MCF2-207ENST00000483690 NPAS3Q8IXF0 933 aa12.04□□□□□ -0.48
MCF2-207ENST00000483690 ABCB6Q9NP58 842 aa12.04□□□□□ -0.48
MCF2-207ENST00000483690 TTF2Q9UNY4 1162 aaKnown RBP12.04□□□□□ -0.48
MCF2-207ENST00000483690 TRPA1O75762 1119 aa12.03□□□□□ -0.48
MCF2-207ENST00000483690 EIF2AK2P19525 551 aaKnown RBP12.03□□□□□ -0.48
MCF2-207ENST00000483690 GAS6Q14393 721 aa12.03□□□□□ -0.48
MCF2-207ENST00000483690 C3orf58Q8NDZ4 430 aa12.03□□□□□ -0.48
MCF2-207ENST00000483690 ARAFP10398 606 aa12.02□□□□□ -0.49
MCF2-207ENST00000483690 ADH6P28332 368 aa12.02□□□□□ -0.49
MCF2-207ENST00000483690 MAP2K3P46734 347 aa12.02□□□□□ -0.49
MCF2-207ENST00000483690 RAD51AP2Q09MP3 1159 aa12.02□□□□□ -0.49
MCF2-207ENST00000483690 TNFRSF25Q93038 417 aa12.02□□□□□ -0.49
MCF2-207ENST00000483690 PBX4Q9BYU1 374 aa12.02□□□□□ -0.49
MCF2-207ENST00000483690 AKAP2Q9Y2D5 859 aa12.02□□□□□ -0.49
MCF2-207ENST00000483690 PDE2AO00408 941 aaPredicted RBP12.01□□□□□ -0.49
MCF2-207ENST00000483690 FAM35AQ86V20 835 aa12.01□□□□□ -0.49
MCF2-207ENST00000483690 TMEM102Q8N9M5 508 aaPredicted RBP12.01□□□□□ -0.49
MCF2-207ENST00000483690 BHLHE41Q9C0J9 482 aaPredicted RBP12.01□□□□□ -0.49
MCF2-207ENST00000483690 TGIF2Q9GZN2 237 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms