RNA–Protein interactions for RNA: ENST00000478279.5

APTX-222, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 684 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-222	ENST00000478279	PNN	Q9H307	717 aa	Known RBP	13.91	□□□□□ -0.18
APTX-222	ENST00000478279	BABAM1	Q9NWV8	329 aa		13.91	□□□□□ -0.18
APTX-222	ENST00000478279	ASTN2	O75129	1339 aa	Predicted RBP	13.9	□□□□□ -0.18
APTX-222	ENST00000478279	FKBP1B	P68106	108 aa		13.9	□□□□□ -0.18
APTX-222	ENST00000478279	TBC1D16	Q8TBP0	767 aa		13.9	□□□□□ -0.18
APTX-222	ENST00000478279	ZC3H12C	Q9C0D7	883 aa	Known RBP	13.9	□□□□□ -0.18
APTX-222	ENST00000478279	HDAC9	Q9UKV0	1011 aa		13.9	□□□□□ -0.18
APTX-222	ENST00000478279	DDX60	Q8IY21	1712 aa	Known RBP	13.9	□□□□□ -0.18
APTX-222	ENST00000478279	MAPK8IP3	Q9UPT6	1336 aa		13.9	□□□□□ -0.19
APTX-222	ENST00000478279	ZNF296	Q8WUU4	475 aa	Predicted RBP	13.89	□□□□□ -0.19
APTX-222	ENST00000478279	NECTIN2	Q92692	538 aa		13.89	□□□□□ -0.19
APTX-222	ENST00000478279	SCN9A	Q15858	1988 aa		13.89	□□□□□ -0.19
APTX-222	ENST00000478279	ZNF280A	P59817	542 aa	Predicted RBP	13.88	□□□□□ -0.19
APTX-222	ENST00000478279	RPS8	P62241	208 aa	Known RBP	13.88	□□□□□ -0.19
APTX-222	ENST00000478279	SCARF1	Q14162	830 aa		13.88	□□□□□ -0.19
APTX-222	ENST00000478279	ANGEL2	Q5VTE6	544 aa	Known RBP	13.88	□□□□□ -0.19
APTX-222	ENST00000478279	ZNF428	Q96B54	188 aa		13.88	□□□□□ -0.19
APTX-222	ENST00000478279	FAM89A	Q96GI7	184 aa		13.88	□□□□□ -0.19
APTX-222	ENST00000478279	TBC1D8	O95759	1140 aa		13.87	□□□□□ -0.19
APTX-222	ENST00000478279	AGBL3	Q8NEM8	1001 aa		13.87	□□□□□ -0.19
APTX-222	ENST00000478279	GCC1	Q96CN9	775 aa		13.87	□□□□□ -0.19
APTX-222	ENST00000478279	ISCA1	Q9BUE6	129 aa		13.87	□□□□□ -0.19
APTX-222	ENST00000478279	PODXL2	Q9NZ53	605 aa		13.87	□□□□□ -0.19
APTX-222	ENST00000478279	PAPPA2	Q9BXP8	1791 aa		13.86	□□□□□ -0.19
APTX-222	ENST00000478279		G3V3G9	751 aa		13.86	□□□□□ -0.19
APTX-222	ENST00000478279	RIPK4	P57078	832 aa		13.86	□□□□□ -0.19
APTX-222	ENST00000478279	NOM1	Q5C9Z4	860 aa	Known RBP	13.86	□□□□□ -0.19
APTX-222	ENST00000478279	DCAF8	Q5TAQ9	597 aa		13.86	□□□□□ -0.19
APTX-222	ENST00000478279	RSBN1L	Q6PCB5	846 aa	Predicted RBP	13.86	□□□□□ -0.19
APTX-222	ENST00000478279	PLBD2	Q8NHP8	589 aa		13.86	□□□□□ -0.19
APTX-222	ENST00000478279	ZNF609	O15014	1411 aa		13.86	□□□□□ -0.19
APTX-222	ENST00000478279	PITPNM2	Q9BZ72	1349 aa		13.86	□□□□□ -0.19
APTX-222	ENST00000478279	COL4A1	P02462	1669 aa		13.85	□□□□□ -0.19
APTX-222	ENST00000478279	MKI67	P46013	3256 aa	Known RBP	13.85	□□□□□ -0.19
APTX-222	ENST00000478279	GPR25	O00155	361 aa		13.85	□□□□□ -0.19
APTX-222	ENST00000478279	TM4SF4	P48230	202 aa		13.85	□□□□□ -0.19
APTX-222	ENST00000478279	FBXO46	Q6PJ61	603 aa	Predicted RBP	13.85	□□□□□ -0.19
APTX-222	ENST00000478279	ANKRD13D	Q6ZTN6	518 aa		13.85	□□□□□ -0.19
APTX-222	ENST00000478279	MOB2	Q70IA6	237 aa		13.85	□□□□□ -0.19
APTX-222	ENST00000478279	MYOZ2	Q9NPC6	264 aa		13.85	□□□□□ -0.19
APTX-222	ENST00000478279	ATP5J2-PTCD1	G3V325	749 aa		13.84	□□□□□ -0.19
APTX-222	ENST00000478279	UBE2Q2L	H0YL09	131 aa		13.84	□□□□□ -0.19
APTX-222	ENST00000478279	IRS4	O14654	1257 aa	Predicted RBP	13.84	□□□□□ -0.19
APTX-222	ENST00000478279	UFL1	O94874	794 aa		13.84	□□□□□ -0.19
APTX-222	ENST00000478279	USP17L8	P0C7I0	530 aa		13.84	□□□□□ -0.19
APTX-222	ENST00000478279	TRIM28	Q13263	835 aa	Known RBP	13.84	□□□□□ -0.19
APTX-222	ENST00000478279	RTL5	Q5HYW3	569 aa	Predicted RBP	13.84	□□□□□ -0.19
APTX-222	ENST00000478279	GML	Q99445	158 aa		13.84	□□□□□ -0.19
APTX-222	ENST00000478279	CHPF2	Q9P2E5	772 aa		13.84	□□□□□ -0.19
APTX-222	ENST00000478279	ANKIB1	Q9P2G1	1089 aa		13.84	□□□□□ -0.19
APTX-222	ENST00000478279	GGA1	Q9UJY5	639 aa		13.84	□□□□□ -0.19
APTX-222	ENST00000478279	PSME4	Q14997	1843 aa		13.83	□□□□□ -0.2
APTX-222	ENST00000478279	FKTN	O75072	461 aa		13.82	□□□□□ -0.2
APTX-222	ENST00000478279	LMOD3	Q0VAK6	560 aa		13.82	□□□□□ -0.2
APTX-222	ENST00000478279	KRT24	Q2M2I5	525 aa		13.82	□□□□□ -0.2
APTX-222	ENST00000478279	CFHR5	Q9BXR6	569 aa		13.82	□□□□□ -0.2
APTX-222	ENST00000478279	SEC31B	Q9NQW1	1179 aa		13.82	□□□□□ -0.2
APTX-222	ENST00000478279	HTT	P42858	3142 aa		13.81	□□□□□ -0.2
APTX-222	ENST00000478279	USP17L3	A6NCW0	530 aa		13.81	□□□□□ -0.2
APTX-222	ENST00000478279	USP17L4	A6NCW7	530 aa		13.81	□□□□□ -0.2
APTX-222	ENST00000478279	CHL1	O00533	1208 aa		13.81	□□□□□ -0.2
APTX-222	ENST00000478279	HSP90B1	P14625	803 aa	Known RBP	13.81	□□□□□ -0.2
APTX-222	ENST00000478279	TMPO	P42166	694 aa	Known RBP	13.81	□□□□□ -0.2
APTX-222	ENST00000478279	SREBF2	Q12772	1141 aa		13.81	□□□□□ -0.2
APTX-222	ENST00000478279	TTLL12	Q14166	644 aa	Predicted RBP	13.81	□□□□□ -0.2
APTX-222	ENST00000478279	HDGFL1	Q5TGJ6	251 aa		13.81	□□□□□ -0.2
APTX-222	ENST00000478279	PRAMEF18	Q5VWM3	479 aa		13.81	□□□□□ -0.2
APTX-222	ENST00000478279	USP17L1	Q7RTZ2	530 aa		13.81	□□□□□ -0.2
APTX-222	ENST00000478279	PODN	Q7Z5L7	613 aa		13.81	□□□□□ -0.2
APTX-222	ENST00000478279	SCAF8	Q9UPN6	1271 aa	Known RBP	13.81	□□□□□ -0.2
APTX-222	ENST00000478279	CENPF	P49454	3210 aa		13.81	□□□□□ -0.2
APTX-222	ENST00000478279	KIAA0100	Q14667	2235 aa	Known RBP	13.8	□□□□□ -0.2
APTX-222	ENST00000478279	NF2	P35240	595 aa		13.8	□□□□□ -0.2
APTX-222	ENST00000478279	NBPF9	Q3BBW0	867 aa		13.8	□□□□□ -0.2
APTX-222	ENST00000478279	HABP4	Q5JVS0	413 aa	Known RBP	13.8	□□□□□ -0.2
APTX-222	ENST00000478279	DBF4	Q9UBU7	674 aa	Predicted RBP	13.8	□□□□□ -0.2
APTX-222	ENST00000478279	HOXB7	P09629	217 aa		13.79	□□□□□ -0.2
APTX-222	ENST00000478279	MKRN3	Q13064	507 aa	Known RBP	13.79	□□□□□ -0.2
APTX-222	ENST00000478279	CCDC152	Q4G0S7	254 aa		13.79	□□□□□ -0.2
APTX-222	ENST00000478279	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	13.79	□□□□□ -0.2
APTX-222	ENST00000478279	R3HDML	Q9H3Y0	253 aa		13.79	□□□□□ -0.2
APTX-222	ENST00000478279	HYPK	Q9NX55	129 aa		13.79	□□□□□ -0.2
APTX-222	ENST00000478279	XDH	P47989	1333 aa		13.79	□□□□□ -0.2
APTX-222	ENST00000478279	WNT10B	O00744	389 aa		13.77	□□□□□ -0.21
APTX-222	ENST00000478279	ALDH1A1	P00352	501 aa		13.77	□□□□□ -0.21
APTX-222	ENST00000478279	ATP2B4	P23634	1241 aa		13.77	□□□□□ -0.21
APTX-222	ENST00000478279	PTPN12	Q05209	780 aa	Known RBP	13.77	□□□□□ -0.21
APTX-222	ENST00000478279	INTS3	Q68E01	1043 aa	Known RBP	13.77	□□□□□ -0.21
APTX-222	ENST00000478279	ARMC9	Q7Z3E5	817 aa		13.77	□□□□□ -0.21
APTX-222	ENST00000478279	OGFOD1	Q8N543	542 aa		13.77	□□□□□ -0.21
APTX-222	ENST00000478279	LAS1L	Q9Y4W2	734 aa	Known RBP	13.77	□□□□□ -0.21
APTX-222	ENST00000478279	BRCA2	P51587	3418 aa		13.77	□□□□□ -0.21
APTX-222	ENST00000478279	PDE8A	O60658	829 aa		13.76	□□□□□ -0.21
APTX-222	ENST00000478279	DACT2	Q5SW24	774 aa		13.76	□□□□□ -0.21
APTX-222	ENST00000478279	LDLRAD1	Q5T700	205 aa		13.76	□□□□□ -0.21
APTX-222	ENST00000478279	SPRYD7	Q5W111	196 aa		13.76	□□□□□ -0.21
APTX-222	ENST00000478279	RIC3	Q7Z5B4	369 aa		13.76	□□□□□ -0.21
APTX-222	ENST00000478279	ANKRD18A	Q8IVF6	992 aa		13.76	□□□□□ -0.21
APTX-222	ENST00000478279	POTEF	A5A3E0	1075 aa		13.75	□□□□□ -0.21
APTX-222	ENST00000478279	PCCA	P05165	728 aa	Predicted RBP	13.75	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms