RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 NTSR2O95665 410 aa6.63□□□□□ -1.35
USP4-209ENST00000475873 GTF2E1P29083 439 aaPredicted RBP6.63□□□□□ -1.35
USP4-209ENST00000475873 SREBF2Q12772 1141 aa6.63□□□□□ -1.35
USP4-209ENST00000475873 SCARF1Q14162 830 aa6.63□□□□□ -1.35
USP4-209ENST00000475873 MTFR1Q15390 333 aa6.63□□□□□ -1.35
USP4-209ENST00000475873 SLC9C1Q4G0N8 1177 aa6.63□□□□□ -1.35
USP4-209ENST00000475873 SUSD4Q5VX71 490 aa6.63□□□□□ -1.35
USP4-209ENST00000475873 DPP8Q6V1X1 898 aaPredicted RBP6.63□□□□□ -1.35
USP4-209ENST00000475873 ERO1AQ96HE7 468 aa6.63□□□□□ -1.35
USP4-209ENST00000475873 RBM17Q96I25 401 aaKnown RBP6.63□□□□□ -1.35
USP4-209ENST00000475873 GUCD1Q96NT3 240 aa6.63□□□□□ -1.35
USP4-209ENST00000475873 IBTKQ9P2D0 1353 aaPredicted RBP6.62□□□□□ -1.35
USP4-209ENST00000475873 GPTP24298 496 aa6.62□□□□□ -1.35
USP4-209ENST00000475873 RPS12P25398 132 aaKnown RBP6.62□□□□□ -1.35
USP4-209ENST00000475873 GJA5P36382 358 aa6.62□□□□□ -1.35
USP4-209ENST00000475873 ZNF280AP59817 542 aaPredicted RBP6.62□□□□□ -1.35
USP4-209ENST00000475873 LDLRAD1Q5T700 205 aa6.62□□□□□ -1.35
USP4-209ENST00000475873 SUPT20HQ8NEM7 779 aa6.62□□□□□ -1.35
USP4-209ENST00000475873 FMNL2Q96PY5 1086 aa6.62□□□□□ -1.35
USP4-209ENST00000475873 PTPN18Q99952 460 aa6.62□□□□□ -1.35
USP4-209ENST00000475873 GDF15Q99988 308 aa6.62□□□□□ -1.35
USP4-209ENST00000475873 ALDH1A1P00352 501 aa6.61□□□□□ -1.35
USP4-209ENST00000475873 VIL1P09327 827 aaKnown RBP6.61□□□□□ -1.35
USP4-209ENST00000475873 HMOX1P09601 288 aa6.61□□□□□ -1.35
USP4-209ENST00000475873 BCAMP50895 628 aa6.61□□□□□ -1.35
USP4-209ENST00000475873 SP3Q02447 781 aa6.61□□□□□ -1.35
USP4-209ENST00000475873 DOK7Q18PE1 504 aa6.61□□□□□ -1.35
USP4-209ENST00000475873 SP8Q8IXZ3 490 aa6.61□□□□□ -1.35
USP4-209ENST00000475873 CLMNQ96JQ2 1002 aa6.61□□□□□ -1.35
USP4-209ENST00000475873 GMLQ99445 158 aa6.61□□□□□ -1.35
USP4-209ENST00000475873 ARHGAP39Q9C0H5 1083 aa6.61□□□□□ -1.35
USP4-209ENST00000475873 CEMIPQ8WUJ3 1361 aa6.6□□□□□ -1.35
USP4-209ENST00000475873 RPTORQ8N122 1335 aa6.6□□□□□ -1.35
USP4-209ENST00000475873 RIMBP2O15034 1052 aa6.6□□□□□ -1.35
USP4-209ENST00000475873 ECE2O60344 883 aa6.6□□□□□ -1.35
USP4-209ENST00000475873 PRKG1Q13976 671 aa6.6□□□□□ -1.35
USP4-209ENST00000475873 LRIT3Q3SXY7 679 aa6.6□□□□□ -1.35
USP4-209ENST00000475873 TTLL7Q6ZT98 887 aa6.6□□□□□ -1.35
USP4-209ENST00000475873 ANKRD13DQ6ZTN6 518 aa6.6□□□□□ -1.35
USP4-209ENST00000475873 NPM2Q86SE8 214 aaKnown RBP6.6□□□□□ -1.35
USP4-209ENST00000475873 FAM122AQ96E09 287 aa6.6□□□□□ -1.35
USP4-209ENST00000475873 NYXQ9GZU5 481 aa6.6□□□□□ -1.35
USP4-209ENST00000475873 POLLQ9UGP5 575 aa6.6□□□□□ -1.35
USP4-209ENST00000475873 PSME4Q14997 1843 aa6.6□□□□□ -1.35
USP4-209ENST00000475873 ANKRD36CQ5JPF3 1778 aa6.59□□□□□ -1.35
USP4-209ENST00000475873 DDX60Q8IY21 1712 aaKnown RBP6.59□□□□□ -1.35
USP4-209ENST00000475873 MANSC4A6NHS7 340 aaPredicted RBP6.59□□□□□ -1.35
USP4-209ENST00000475873 TTLL12Q14166 644 aaPredicted RBP6.59□□□□□ -1.35
USP4-209ENST00000475873 NBPF9Q3BBW0 867 aa6.59□□□□□ -1.35
USP4-209ENST00000475873 NBPF11Q86T75 865 aa6.59□□□□□ -1.35
USP4-209ENST00000475873 ZNF34Q8IZ26 560 aa6.59□□□□□ -1.35
USP4-209ENST00000475873 WNK4Q96J92 1243 aa6.59□□□□□ -1.35
USP4-209ENST00000475873 NR2E3Q9Y5X4 410 aa6.59□□□□□ -1.35
USP4-209ENST00000475873 MAP3K15Q6ZN16 1313 aa6.58□□□□□ -1.36
USP4-209ENST00000475873 BBOX1O75936 387 aa6.58□□□□□ -1.36
USP4-209ENST00000475873 CTGFP29279 349 aa6.58□□□□□ -1.36
USP4-209ENST00000475873 BMP8BP34820 402 aa6.58□□□□□ -1.36
USP4-209ENST00000475873 GJA8P48165 433 aa6.58□□□□□ -1.36
USP4-209ENST00000475873 TEFQ10587 303 aa6.58□□□□□ -1.36
USP4-209ENST00000475873 WASHC4Q2M389 1173 aa6.58□□□□□ -1.36
USP4-209ENST00000475873 SLC10A5Q5PT55 438 aa6.58□□□□□ -1.36
USP4-209ENST00000475873 HTATIP2Q9BUP3 242 aa6.58□□□□□ -1.36
USP4-209ENST00000475873 MYOZ2Q9NPC6 264 aa6.58□□□□□ -1.36
USP4-209ENST00000475873 MUC6Q6W4X9 2439 aa6.57□□□□□ -1.36
USP4-209ENST00000475873 BDP1A6H8Y1 2624 aa6.57□□□□□ -1.36
USP4-209ENST00000475873 ERVV-1B6SEH8 477 aa6.57□□□□□ -1.36
USP4-209ENST00000475873 POTEB2H3BUK9 544 aa6.57□□□□□ -1.36
USP4-209ENST00000475873 INHBEP58166 350 aa6.57□□□□□ -1.36
USP4-209ENST00000475873 GPSM2P81274 684 aa6.57□□□□□ -1.36
USP4-209ENST00000475873 TCIRG1Q13488 830 aa6.57□□□□□ -1.36
USP4-209ENST00000475873 NGEFQ8N5V2 710 aa6.57□□□□□ -1.36
USP4-209ENST00000475873 SNX27Q96L92 541 aa6.57□□□□□ -1.36
USP4-209ENST00000475873 FAM161BQ96MY7 647 aa6.57□□□□□ -1.36
USP4-209ENST00000475873 NLRP3Q96P20 1036 aa6.57□□□□□ -1.36
USP4-209ENST00000475873 ZBTB3Q9H5J0 574 aa6.57□□□□□ -1.36
USP4-209ENST00000475873 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.57□□□□□ -1.36
USP4-209ENST00000475873 COL2A1P02458 1487 aaPredicted RBP6.57□□□□□ -1.36
USP4-209ENST00000475873 SYNGAP1Q96PV0 1343 aa6.56□□□□□ -1.36
USP4-209ENST00000475873 TESPA1A2RU30 521 aaPredicted RBP6.56□□□□□ -1.36
USP4-209ENST00000475873 BTBD11A6QL63 1104 aa6.56□□□□□ -1.36
USP4-209ENST00000475873 EVI5O60447 810 aa6.56□□□□□ -1.36
USP4-209ENST00000475873 SLC24A1O60721 1099 aa6.56□□□□□ -1.36
USP4-209ENST00000475873 ECM2O94769 699 aaPredicted RBP6.56□□□□□ -1.36
USP4-209ENST00000475873 FARP2O94887 1054 aaPredicted RBP6.56□□□□□ -1.36
USP4-209ENST00000475873 GJB1P08034 283 aa6.56□□□□□ -1.36
USP4-209ENST00000475873 SNRPA1P09661 255 aaKnown RBP6.56□□□□□ -1.36
USP4-209ENST00000475873 ZBTB48P10074 688 aaPredicted RBP6.56□□□□□ -1.36
USP4-209ENST00000475873 HCLS1P14317 486 aaPredicted RBP6.56□□□□□ -1.36
USP4-209ENST00000475873 GRAPQ13588 217 aa6.56□□□□□ -1.36
USP4-209ENST00000475873 RSBN1LQ6PCB5 846 aaPredicted RBP6.56□□□□□ -1.36
USP4-209ENST00000475873 GRAPLQ8TC17 118 aaPredicted RBP6.56□□□□□ -1.36
USP4-209ENST00000475873 MS4A4AQ96JQ5 239 aa6.56□□□□□ -1.36
USP4-209ENST00000475873 ZMYND8Q9ULU4 1186 aaPredicted RBP6.56□□□□□ -1.36
USP4-209ENST00000475873 ANGEL1Q9UNK9 670 aaKnown RBP6.56□□□□□ -1.36
USP4-209ENST00000475873 OTOFQ9HC10 1997 aa6.56□□□□□ -1.36
USP4-209ENST00000475873 IRS2Q9Y4H2 1338 aa6.55□□□□□ -1.36
USP4-209ENST00000475873 TMEM265A0A087WTH1 108 aa6.55□□□□□ -1.36
USP4-209ENST00000475873 GNAT3A8MTJ3 354 aa6.55□□□□□ -1.36
USP4-209ENST00000475873 WNT10BO00744 389 aa6.55□□□□□ -1.36
USP4-209ENST00000475873 USP17L8P0C7I0 530 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms