RNA–Protein interactions for RNA: ENST00000474825.1

ATG4A-207, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-207ENST00000474825 RGS3P49796 1198 aa8.18□□□□□ -1.1
ATG4A-207ENST00000474825 R3HDM1Q15032 1099 aaKnown RBP8.18□□□□□ -1.1
ATG4A-207ENST00000474825 FAM161AQ3B820 660 aa8.18□□□□□ -1.1
ATG4A-207ENST00000474825 ARSIQ5FYB1 569 aa8.18□□□□□ -1.1
ATG4A-207ENST00000474825 SLC10A5Q5PT55 438 aa8.18□□□□□ -1.1
ATG4A-207ENST00000474825 SUSD4Q5VX71 490 aa8.18□□□□□ -1.1
ATG4A-207ENST00000474825 LMBR1LQ6UX01 489 aa8.18□□□□□ -1.1
ATG4A-207ENST00000474825 C16orf71Q8IYS4 520 aaPredicted RBP8.18□□□□□ -1.1
ATG4A-207ENST00000474825 RHPN1Q8TCX5 695 aa8.18□□□□□ -1.1
ATG4A-207ENST00000474825 FAM89AQ96GI7 184 aa8.18□□□□□ -1.1
ATG4A-207ENST00000474825 ZNF330Q9Y3S2 320 aaPredicted RBP8.18□□□□□ -1.1
ATG4A-207ENST00000474825 AOX1Q06278 1338 aa8.18□□□□□ -1.1
ATG4A-207ENST00000474825 RTL9Q8NET4 1388 aa8.18□□□□□ -1.1
ATG4A-207ENST00000474825 RGPD3A6NKT7 1758 aaPredicted RBP8.17□□□□□ -1.1
ATG4A-207ENST00000474825 RGPD4Q7Z3J3 1758 aa8.17□□□□□ -1.1
ATG4A-207ENST00000474825 NUP98P52948 1817 aa8.17□□□□□ -1.1
ATG4A-207ENST00000474825 IRS4O14654 1257 aaPredicted RBP8.17□□□□□ -1.1
ATG4A-207ENST00000474825 PDE8AO60658 829 aa8.17□□□□□ -1.1
ATG4A-207ENST00000474825 CIAO1O76071 339 aa8.17□□□□□ -1.1
ATG4A-207ENST00000474825 HSP90B1P14625 803 aaKnown RBP8.17□□□□□ -1.1
ATG4A-207ENST00000474825 GPTP24298 496 aa8.17□□□□□ -1.1
ATG4A-207ENST00000474825 PBX2P40425 430 aa8.17□□□□□ -1.1
ATG4A-207ENST00000474825 TRAPPC3LQ5T215 181 aa8.17□□□□□ -1.1
ATG4A-207ENST00000474825 TTLL11Q8NHH1 800 aa8.17□□□□□ -1.1
ATG4A-207ENST00000474825 JARID2Q92833 1246 aaPredicted RBP8.17□□□□□ -1.1
ATG4A-207ENST00000474825 UTP14AQ9BVJ6 771 aaKnown RBP8.17□□□□□ -1.1
ATG4A-207ENST00000474825 GPR108Q9NPR9 543 aa8.17□□□□□ -1.1
ATG4A-207ENST00000474825 PLA2G2EQ9NZK7 142 aa8.17□□□□□ -1.1
ATG4A-207ENST00000474825 TRMT112Q9UI30 125 aaKnown RBP8.17□□□□□ -1.1
ATG4A-207ENST00000474825 SH3TC1Q8TE82 1336 aa8.17□□□□□ -1.1
ATG4A-207ENST00000474825 SCN7AQ01118 1682 aa8.17□□□□□ -1.1
ATG4A-207ENST00000474825 SMARCA5O60264 1052 aaPredicted RBP8.16□□□□□ -1.1
ATG4A-207ENST00000474825 PDE1AP54750 535 aa8.16□□□□□ -1.1
ATG4A-207ENST00000474825 AFDNP55196 1824 aaKnown RBP8.16□□□□□ -1.1
ATG4A-207ENST00000474825 CTSWP56202 376 aa8.16□□□□□ -1.1
ATG4A-207ENST00000474825 USPL1Q5W0Q7 1092 aa8.16□□□□□ -1.1
ATG4A-207ENST00000474825 ATG9AQ7Z3C6 839 aa8.16□□□□□ -1.1
ATG4A-207ENST00000474825 SYNE4Q8N205 404 aa8.16□□□□□ -1.1
ATG4A-207ENST00000474825 OTUD7AQ8TE49 926 aaPredicted RBP8.16□□□□□ -1.1
ATG4A-207ENST00000474825 PA2G4Q9UQ80 394 aaKnown RBP8.16□□□□□ -1.1
ATG4A-207ENST00000474825 NIP7Q9Y221 180 aaKnown RBP eCLIP8.16□□□□□ -1.1
ATG4A-207ENST00000474825 TNS1Q9HBL0 1735 aaKnown RBP8.15□□□□□ -1.1
ATG4A-207ENST00000474825 RIC1Q4ADV7 1423 aa8.15□□□□□ -1.1
ATG4A-207ENST00000474825 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.15□□□□□ -1.1
ATG4A-207ENST00000474825 EYA2O00167 538 aa8.15□□□□□ -1.1
ATG4A-207ENST00000474825 ZPR1O75312 459 aa8.15□□□□□ -1.1
ATG4A-207ENST00000474825 GSPT1P15170 499 aaKnown RBP8.15□□□□□ -1.1
ATG4A-207ENST00000474825 TM4SF1P30408 202 aa8.15□□□□□ -1.1
ATG4A-207ENST00000474825 IL15P40933 162 aaPredicted RBP8.15□□□□□ -1.1
ATG4A-207ENST00000474825 G3BP1Q13283 466 aaKnown RBP eCLIP8.15□□□□□ -1.1
ATG4A-207ENST00000474825 SF3B3Q15393 1217 aaKnown RBP8.15□□□□□ -1.1
ATG4A-207ENST00000474825 TTC22Q5TAA0 569 aa8.15□□□□□ -1.1
ATG4A-207ENST00000474825 TBC1D9BQ66K14 1250 aa8.15□□□□□ -1.1
ATG4A-207ENST00000474825 ARXQ96QS3 562 aa8.15□□□□□ -1.1
ATG4A-207ENST00000474825 SRP68Q9UHB9 627 aaKnown RBP8.15□□□□□ -1.1
ATG4A-207ENST00000474825 UBR3Q6ZT12 1888 aa8.15□□□□□ -1.11
ATG4A-207ENST00000474825 COL24A1Q17RW2 1714 aa8.15□□□□□ -1.11
ATG4A-207ENST00000474825 TTC41PQ6P2S7 1318 aa8.14□□□□□ -1.11
ATG4A-207ENST00000474825 GYS1P13807 737 aa8.14□□□□□ -1.11
ATG4A-207ENST00000474825 MX1P20591 662 aa8.14□□□□□ -1.11
ATG4A-207ENST00000474825 RFC4P35249 363 aa8.14□□□□□ -1.11
ATG4A-207ENST00000474825 CCDC57Q2TAC2 916 aa8.14□□□□□ -1.11
ATG4A-207ENST00000474825 SMIM5Q71RC9 77 aa8.14□□□□□ -1.11
ATG4A-207ENST00000474825 CLASRPQ8N2M8 674 aaKnown RBP8.14□□□□□ -1.11
ATG4A-207ENST00000474825 FLAD1Q8NFF5 587 aa8.14□□□□□ -1.11
ATG4A-207ENST00000474825 PI4K2BQ8TCG2 481 aa8.14□□□□□ -1.11
ATG4A-207ENST00000474825 EAF2Q96CJ1 260 aaPredicted RBP8.14□□□□□ -1.11
ATG4A-207ENST00000474825 MS4A4AQ96JQ5 239 aa8.14□□□□□ -1.11
ATG4A-207ENST00000474825 NYXQ9GZU5 481 aa8.14□□□□□ -1.11
ATG4A-207ENST00000474825 HCSTQ9UBK5 93 aa8.14□□□□□ -1.11
ATG4A-207ENST00000474825 RIPOR2Q9Y4F9 1068 aa8.14□□□□□ -1.11
ATG4A-207ENST00000474825 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.14□□□□□ -1.11
ATG4A-207ENST00000474825 IFIT5Q13325 482 aaKnown RBP8.13□□□□□ -1.11
ATG4A-207ENST00000474825 ZNF827Q17R98 1081 aa8.13□□□□□ -1.11
ATG4A-207ENST00000474825 RTL5Q5HYW3 569 aaPredicted RBP8.13□□□□□ -1.11
ATG4A-207ENST00000474825 TPTE2Q6XPS3 522 aa8.13□□□□□ -1.11
ATG4A-207ENST00000474825 KLHDC4Q8TBB5 520 aa8.13□□□□□ -1.11
ATG4A-207ENST00000474825 SETDB2Q96T68 719 aa8.13□□□□□ -1.11
ATG4A-207ENST00000474825 GREM2Q9H772 168 aa8.13□□□□□ -1.11
ATG4A-207ENST00000474825 IL1RAPL2Q9NP60 686 aa8.13□□□□□ -1.11
ATG4A-207ENST00000474825 RBM19Q9Y4C8 960 aaKnown RBP8.13□□□□□ -1.11
ATG4A-207ENST00000474825 LRP5O75197 1615 aa8.13□□□□□ -1.11
ATG4A-207ENST00000474825 C4AP0C0L4 1744 aa8.12□□□□□ -1.11
ATG4A-207ENST00000474825 CARMIL3Q8ND23 1372 aa8.12□□□□□ -1.11
ATG4A-207ENST00000474825 ANKRD18BA2A2Z9 1011 aa8.12□□□□□ -1.11
ATG4A-207ENST00000474825 KLRG2A4D1S0 409 aaPredicted RBP8.12□□□□□ -1.11
ATG4A-207ENST00000474825 APBB1O00213 710 aa8.12□□□□□ -1.11
ATG4A-207ENST00000474825 ITGA6P23229 1130 aa8.12□□□□□ -1.11
ATG4A-207ENST00000474825 NFIXQ14938 502 aa8.12□□□□□ -1.11
ATG4A-207ENST00000474825 ERFEQ4G0M1 354 aa8.12□□□□□ -1.11
ATG4A-207ENST00000474825 CCDC152Q4G0S7 254 aa8.12□□□□□ -1.11
ATG4A-207ENST00000474825 LRRC24Q50LG9 513 aa8.12□□□□□ -1.11
ATG4A-207ENST00000474825 TNNI3KQ59H18 835 aa8.12□□□□□ -1.11
ATG4A-207ENST00000474825 TICAM2Q86XR7 235 aa8.12□□□□□ -1.11
ATG4A-207ENST00000474825 VGLL2Q8N8G2 317 aa8.12□□□□□ -1.11
ATG4A-207ENST00000474825 FPGT-TNNI3KV9GXZ4 949 aa8.12□□□□□ -1.11
ATG4A-207ENST00000474825 LAMB2P55268 1798 aa8.12□□□□□ -1.11
ATG4A-207ENST00000474825 ABCC12Q96J65 1359 aa8.11□□□□□ -1.11
ATG4A-207ENST00000474825 GLRX3O76003 335 aaKnown RBP8.11□□□□□ -1.11
ATG4A-207ENST00000474825 HCLS1P14317 486 aaPredicted RBP8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms