RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 IPO8O15397 1037 aaKnown RBP8.85□□□□□ -0.99
LIMD1-204ENST00000474665 SRGNP10124 158 aa8.85□□□□□ -0.99
LIMD1-204ENST00000474665 ZIC5Q96T25 663 aa8.85□□□□□ -0.99
LIMD1-204ENST00000474665 SRCIN1Q9C0H9 1055 aa8.85□□□□□ -0.99
LIMD1-204ENST00000474665 NYXQ9GZU5 481 aa8.85□□□□□ -0.99
LIMD1-204ENST00000474665 TAOK3Q9H2K8 898 aa8.85□□□□□ -0.99
LIMD1-204ENST00000474665 ADAMTSL1Q8N6G6 1762 aa8.85□□□□□ -0.99
LIMD1-204ENST00000474665 SCN4AP35499 1836 aa8.84□□□□□ -0.99
LIMD1-204ENST00000474665 CDHR2Q9BYE9 1310 aa8.84□□□□□ -0.99
LIMD1-204ENST00000474665 ZNF541Q9H0D2 1346 aa8.84□□□□□ -0.99
LIMD1-204ENST00000474665 DICER1Q9UPY3 1922 aaKnown RBP8.84□□□□□ -0.99
LIMD1-204ENST00000474665 IRS4O14654 1257 aaPredicted RBP8.84□□□□□ -0.99
LIMD1-204ENST00000474665 HOXA10P31260 410 aaPredicted RBP8.84□□□□□ -0.99
LIMD1-204ENST00000474665 ST5P78524 1137 aa8.84□□□□□ -0.99
LIMD1-204ENST00000474665 FOXO4P98177 505 aa8.84□□□□□ -0.99
LIMD1-204ENST00000474665 CACNA1SQ13698 1873 aa8.84□□□□□ -0.99
LIMD1-204ENST00000474665 PNMA8AQ86V59 439 aaPredicted RBP8.84□□□□□ -0.99
LIMD1-204ENST00000474665 ZNF622Q969S3 477 aaKnown RBP eCLIP8.84□□□□□ -0.99
LIMD1-204ENST00000474665 MEIS3Q99687 375 aa8.84□□□□□ -0.99
LIMD1-204ENST00000474665 PLA2G12BQ9BX93 195 aa8.84□□□□□ -0.99
LIMD1-204ENST00000474665 GTF2E1P29083 439 aaPredicted RBP8.83□□□□□ -1
LIMD1-204ENST00000474665 CCT4P50991 539 aaKnown RBP8.83□□□□□ -1
LIMD1-204ENST00000474665 SF3B3Q15393 1217 aaKnown RBP8.83□□□□□ -1
LIMD1-204ENST00000474665 DZIP1LQ8IYY4 767 aaKnown RBP8.83□□□□□ -1
LIMD1-204ENST00000474665 ANKRD44Q8N8A2 993 aa8.83□□□□□ -1
LIMD1-204ENST00000474665 TTLL11Q8NHH1 800 aa8.83□□□□□ -1
LIMD1-204ENST00000474665 SUCLG2Q96I99 432 aa8.83□□□□□ -1
LIMD1-204ENST00000474665 HPS5Q9UPZ3 1129 aa8.83□□□□□ -1
LIMD1-204ENST00000474665 CSF1RP07333 972 aa8.82□□□□□ -1
LIMD1-204ENST00000474665 PDE6BP35913 854 aa8.82□□□□□ -1
LIMD1-204ENST00000474665 RRP1P56182 461 aaKnown RBP8.82□□□□□ -1
LIMD1-204ENST00000474665 C7orf43Q8WVR3 580 aa8.82□□□□□ -1
LIMD1-204ENST00000474665 LTBP3Q9NS15 1303 aa8.81□□□□□ -1
LIMD1-204ENST00000474665 ZBTB7BO15156 539 aaPredicted RBP8.81□□□□□ -1
LIMD1-204ENST00000474665 NPHP1O15259 732 aa8.81□□□□□ -1
LIMD1-204ENST00000474665 PDE8AO60658 829 aa8.81□□□□□ -1
LIMD1-204ENST00000474665 NPR1P16066 1061 aa8.81□□□□□ -1
LIMD1-204ENST00000474665 CTSWP56202 376 aa8.81□□□□□ -1
LIMD1-204ENST00000474665 PDE3AQ14432 1141 aa8.81□□□□□ -1
LIMD1-204ENST00000474665 STYK1Q6J9G0 422 aa8.81□□□□□ -1
LIMD1-204ENST00000474665 OLFM4Q6UX06 510 aa8.81□□□□□ -1
LIMD1-204ENST00000474665 SAPCD2Q86UD0 394 aa8.81□□□□□ -1
LIMD1-204ENST00000474665 MASTLQ96GX5 879 aa8.81□□□□□ -1
LIMD1-204ENST00000474665 NLRP3Q96P20 1036 aa8.81□□□□□ -1
LIMD1-204ENST00000474665 CCDC85AQ96PX6 553 aaPredicted RBP8.81□□□□□ -1
LIMD1-204ENST00000474665 GREM2Q9H772 168 aa8.81□□□□□ -1
LIMD1-204ENST00000474665 SEC31BQ9NQW1 1179 aa8.81□□□□□ -1
LIMD1-204ENST00000474665 C9orf78Q9NZ63 289 aaPredicted RBP8.81□□□□□ -1
LIMD1-204ENST00000474665 FER1L6Q2WGJ9 1857 aa8.81□□□□□ -1
LIMD1-204ENST00000474665 SNED1Q8TER0 1413 aa8.8□□□□□ -1
LIMD1-204ENST00000474665 RABL6Q3YEC7 729 aaPredicted RBP8.8□□□□□ -1
LIMD1-204ENST00000474665 CTU1Q7Z7A3 348 aaKnown RBP8.8□□□□□ -1
LIMD1-204ENST00000474665 CELF1Q92879 486 aaKnown RBP8.8□□□□□ -1
LIMD1-204ENST00000474665 CRAMP1Q96RY5 1269 aa8.8□□□□□ -1
LIMD1-204ENST00000474665 BICC1Q9H694 974 aaKnown RBP8.8□□□□□ -1
LIMD1-204ENST00000474665 COLQQ9Y215 455 aaPredicted RBP8.8□□□□□ -1
LIMD1-204ENST00000474665 COG6Q9Y2V7 657 aa8.8□□□□□ -1
LIMD1-204ENST00000474665 SUPT16HQ9Y5B9 1047 aaKnown RBP8.8□□□□□ -1
LIMD1-204ENST00000474665 LRRFIP2Q9Y608 721 aaKnown RBP8.8□□□□□ -1
LIMD1-204ENST00000474665 RTL9Q8NET4 1388 aa8.8□□□□□ -1
LIMD1-204ENST00000474665 SPEF2Q9C093 1822 aa8.8□□□□□ -1
LIMD1-204ENST00000474665 MVPQ14764 893 aaKnown RBP8.79□□□□□ -1
LIMD1-204ENST00000474665 PRPF40BQ6NWY9 871 aaKnown RBP8.79□□□□□ -1
LIMD1-204ENST00000474665 LMBR1LQ6UX01 489 aa8.79□□□□□ -1
LIMD1-204ENST00000474665 ITPRIPQ8IWB1 547 aa8.79□□□□□ -1
LIMD1-204ENST00000474665 FTSJ3Q8IY81 847 aaKnown RBP8.79□□□□□ -1
LIMD1-204ENST00000474665 PDZRN3Q9UPQ7 1066 aa8.79□□□□□ -1
LIMD1-204ENST00000474665 PITPNM2Q9BZ72 1349 aa8.79□□□□□ -1
LIMD1-204ENST00000474665 LRRC37AA6NMS7 1700 aa8.78□□□□□ -1
LIMD1-204ENST00000474665 TRPA1O75762 1119 aa8.78□□□□□ -1
LIMD1-204ENST00000474665 CELF2O95319 508 aaKnown RBP8.78□□□□□ -1
LIMD1-204ENST00000474665 UBTFL1P0CB47 393 aaPredicted RBP8.78□□□□□ -1
LIMD1-204ENST00000474665 RFX5P48382 616 aaPredicted RBP8.78□□□□□ -1
LIMD1-204ENST00000474665 RPGRQ92834 1020 aaKnown RBP8.78□□□□□ -1
LIMD1-204ENST00000474665 CNKSR1Q969H4 720 aa8.78□□□□□ -1
LIMD1-204ENST00000474665 C1orf115Q9H7X2 142 aa8.78□□□□□ -1
LIMD1-204ENST00000474665 ZNF277Q9NRM2 450 aaPredicted RBP8.78□□□□□ -1
LIMD1-204ENST00000474665 ZBTB40Q9NUA8 1239 aa8.78□□□□□ -1
LIMD1-204ENST00000474665 A0A1B0GUL6 1792 aa8.77□□□□□ -1.01
LIMD1-204ENST00000474665 WTIPA6NIX2 430 aaPredicted RBP8.77□□□□□ -1.01
LIMD1-204ENST00000474665 GNAI3P08754 354 aa8.77□□□□□ -1.01
LIMD1-204ENST00000474665 ITGA6P23229 1130 aa8.77□□□□□ -1.01
LIMD1-204ENST00000474665 EPS15P42566 896 aa8.77□□□□□ -1.01
LIMD1-204ENST00000474665 RPS8P62241 208 aaKnown RBP8.77□□□□□ -1.01
LIMD1-204ENST00000474665 MTX1Q13505 466 aa8.77□□□□□ -1.01
LIMD1-204ENST00000474665 GRAPQ13588 217 aa8.77□□□□□ -1.01
LIMD1-204ENST00000474665 CCDC152Q4G0S7 254 aa8.77□□□□□ -1.01
LIMD1-204ENST00000474665 SIRT2Q8IXJ6 389 aa8.77□□□□□ -1.01
LIMD1-204ENST00000474665 GRAPLQ8TC17 118 aaPredicted RBP8.77□□□□□ -1.01
LIMD1-204ENST00000474665 RBM17Q96I25 401 aaKnown RBP8.77□□□□□ -1.01
LIMD1-204ENST00000474665 ZNF594Q96JF6 807 aaPredicted RBP8.77□□□□□ -1.01
LIMD1-204ENST00000474665 RNF186Q9NXI6 227 aa8.77□□□□□ -1.01
LIMD1-204ENST00000474665 PNMA6EA0A0J9YXQ4 647 aa8.76□□□□□ -1.01
LIMD1-204ENST00000474665 BBOX1O75936 387 aa8.76□□□□□ -1.01
LIMD1-204ENST00000474665 GNAI2P04899 355 aa8.76□□□□□ -1.01
LIMD1-204ENST00000474665 MS4A1P11836 297 aa8.76□□□□□ -1.01
LIMD1-204ENST00000474665 HSP90B1P14625 803 aaKnown RBP8.76□□□□□ -1.01
LIMD1-204ENST00000474665 ALDH1B1P30837 517 aa8.76□□□□□ -1.01
LIMD1-204ENST00000474665 NOGQ13253 232 aa8.76□□□□□ -1.01
LIMD1-204ENST00000474665 DDX46Q7L014 1031 aaKnown RBP8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 108.5 ms