RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 TMEM88BA6NKF7 163 aa23.77■■□□□ 1.4
COL7A1-209ENST00000474432 HIRAP54198 1017 aaPredicted RBP23.77■■□□□ 1.4
COL7A1-209ENST00000474432 FKBP5Q13451 457 aaPredicted RBP23.77■■□□□ 1.4
COL7A1-209ENST00000474432 UBE3BQ7Z3V4 1068 aa23.77■■□□□ 1.4
COL7A1-209ENST00000474432 GREM2Q9H772 168 aa23.77■■□□□ 1.4
COL7A1-209ENST00000474432 CNTNAP1P78357 1384 aa23.77■■□□□ 1.4
COL7A1-209ENST00000474432 DOK7Q18PE1 504 aa23.76■■□□□ 1.39
COL7A1-209ENST00000474432 PGAP2Q9UHJ9 254 aa23.76■■□□□ 1.39
COL7A1-209ENST00000474432 ZBTB12Q9Y330 459 aaPredicted RBP23.76■■□□□ 1.39
COL7A1-209ENST00000474432 WTIPA6NIX2 430 aaPredicted RBP23.75■■□□□ 1.39
COL7A1-209ENST00000474432 PSMD14O00487 310 aa23.75■■□□□ 1.39
COL7A1-209ENST00000474432 ECE2O60344 883 aa23.75■■□□□ 1.39
COL7A1-209ENST00000474432 ANKRD18AQ8IVF6 992 aa23.75■■□□□ 1.39
COL7A1-209ENST00000474432 LINS1Q8NG48 757 aa23.75■■□□□ 1.39
COL7A1-209ENST00000474432 EYA3Q99504 573 aa23.75■■□□□ 1.39
COL7A1-209ENST00000474432 PLA2G12BQ9BX93 195 aa23.75■■□□□ 1.39
COL7A1-209ENST00000474432 MYH16Q9H6N6 1097 aa23.75■■□□□ 1.39
COL7A1-209ENST00000474432 TRPM4Q8TD43 1214 aa23.74■■□□□ 1.39
COL7A1-209ENST00000474432 CNOT7Q9UIV1 285 aaKnown RBP23.74■■□□□ 1.39
COL7A1-209ENST00000474432 TRPM7Q96QT4 1865 aa23.74■■□□□ 1.39
COL7A1-209ENST00000474432 F6X3S4 739 aa23.73■■□□□ 1.39
COL7A1-209ENST00000474432 TRAF5O00463 557 aa23.73■■□□□ 1.39
COL7A1-209ENST00000474432 UFL1O94874 794 aa23.73■■□□□ 1.39
COL7A1-209ENST00000474432 DPF2Q92785 391 aa23.73■■□□□ 1.39
COL7A1-209ENST00000474432 BCL2L13Q9BXK5 485 aa23.73■■□□□ 1.39
COL7A1-209ENST00000474432 ANKIB1Q9P2G1 1089 aa23.73■■□□□ 1.39
COL7A1-209ENST00000474432 GGA1Q9UJY5 639 aa23.73■■□□□ 1.39
COL7A1-209ENST00000474432 PSME4Q14997 1843 aa23.73■■□□□ 1.39
COL7A1-209ENST00000474432 CSF1RP07333 972 aa23.72■■□□□ 1.39
COL7A1-209ENST00000474432 BEND3Q5T5X7 828 aa23.72■■□□□ 1.39
COL7A1-209ENST00000474432 ZC3H12CQ9C0D7 883 aaKnown RBP23.72■■□□□ 1.39
COL7A1-209ENST00000474432 BSDC1Q9NW68 430 aaPredicted RBP23.72■■□□□ 1.39
COL7A1-209ENST00000474432 MINPP1Q9UNW1 487 aa23.72■■□□□ 1.39
COL7A1-209ENST00000474432 XDHP47989 1333 aa23.72■■□□□ 1.39
COL7A1-209ENST00000474432 HSPA1AP0DMV8 641 aaKnown RBP23.71■■□□□ 1.39
COL7A1-209ENST00000474432 HSPA1BP0DMV9 641 aaKnown RBP23.71■■□□□ 1.39
COL7A1-209ENST00000474432 IFFO2Q5TF58 517 aa23.71■■□□□ 1.39
COL7A1-209ENST00000474432 CST9Q5W186 159 aa23.71■■□□□ 1.39
COL7A1-209ENST00000474432 MICALL2Q8IY33 904 aa23.71■■□□□ 1.39
COL7A1-209ENST00000474432 CDC5LQ99459 802 aaKnown RBP23.71■■□□□ 1.39
COL7A1-209ENST00000474432 RASSF10A6NK89 507 aa23.7■■□□□ 1.38
COL7A1-209ENST00000474432 VEGFBP49765 207 aa23.7■■□□□ 1.38
COL7A1-209ENST00000474432 EGFRP00533 1210 aa23.69■■□□□ 1.38
COL7A1-209ENST00000474432 VIL1P09327 827 aaKnown RBP23.69■■□□□ 1.38
COL7A1-209ENST00000474432 ZNF646O15015 1829 aaPredicted RBP23.68■■□□□ 1.38
COL7A1-209ENST00000474432 ATP2B4P23634 1241 aa23.68■■□□□ 1.38
COL7A1-209ENST00000474432 FAM161AQ3B820 660 aa23.68■■□□□ 1.38
COL7A1-209ENST00000474432 SAMD7Q7Z3H4 446 aa23.68■■□□□ 1.38
COL7A1-209ENST00000474432 ZC3H15Q8WU90 426 aaKnown RBP23.68■■□□□ 1.38
COL7A1-209ENST00000474432 GLIS2Q9BZE0 524 aaPredicted RBP23.68■■□□□ 1.38
COL7A1-209ENST00000474432 POLR2AP24928 1970 aaKnown RBP23.67■■□□□ 1.38
COL7A1-209ENST00000474432 RPS12P25398 132 aaKnown RBP23.67■■□□□ 1.38
COL7A1-209ENST00000474432 FOXO4P98177 505 aa23.67■■□□□ 1.38
COL7A1-209ENST00000474432 COL13A1Q5TAT6 717 aaPredicted RBP23.67■■□□□ 1.38
COL7A1-209ENST00000474432 H7C1D1 291 aa23.66■■□□□ 1.38
COL7A1-209ENST00000474432 ITGA6P23229 1130 aa23.66■■□□□ 1.38
COL7A1-209ENST00000474432 ZNF609O15014 1411 aa23.66■■□□□ 1.38
COL7A1-209ENST00000474432 DEFB115Q30KQ5 88 aa23.65■■□□□ 1.38
COL7A1-209ENST00000474432 MED23Q9ULK4 1368 aa23.65■■□□□ 1.38
COL7A1-209ENST00000474432 CCT4P50991 539 aaKnown RBP23.64■■□□□ 1.37
COL7A1-209ENST00000474432 TBC1D10BQ4KMP7 808 aaPredicted RBP23.64■■□□□ 1.37
COL7A1-209ENST00000474432 EPHA10Q5JZY3 1008 aa23.64■■□□□ 1.37
COL7A1-209ENST00000474432 TXNRD3Q86VQ6 643 aa23.64■■□□□ 1.37
COL7A1-209ENST00000474432 GMLQ99445 158 aa23.64■■□□□ 1.37
COL7A1-209ENST00000474432 A0A1B0GUL6 1792 aa23.63■■□□□ 1.37
COL7A1-209ENST00000474432 DLK2Q6UY11 383 aa23.63■■□□□ 1.37
COL7A1-209ENST00000474432 ABT1Q9ULW3 272 aaKnown RBP23.63■■□□□ 1.37
COL7A1-209ENST00000474432 IGHMBP2P38935 993 aaKnown RBP23.62■■□□□ 1.37
COL7A1-209ENST00000474432 SLFN5Q08AF3 891 aa23.62■■□□□ 1.37
COL7A1-209ENST00000474432 RSBN1LQ6PCB5 846 aaPredicted RBP23.62■■□□□ 1.37
COL7A1-209ENST00000474432 TLL2Q9Y6L7 1015 aa23.62■■□□□ 1.37
COL7A1-209ENST00000474432 THSD7BQ9C0I4 1608 aa23.62■■□□□ 1.37
COL7A1-209ENST00000474432 CDC37L1Q7L3B6 337 aa23.61■■□□□ 1.37
COL7A1-209ENST00000474432 PODNQ7Z5L7 613 aa23.61■■□□□ 1.37
COL7A1-209ENST00000474432 MRPL50Q8N5N7 158 aaKnown RBP23.61■■□□□ 1.37
COL7A1-209ENST00000474432 WDR33Q9C0J8 1336 aaKnown RBP23.6■■□□□ 1.37
COL7A1-209ENST00000474432 G3V3G9 751 aa23.6■■□□□ 1.37
COL7A1-209ENST00000474432 GRM8O00222 908 aa23.6■■□□□ 1.37
COL7A1-209ENST00000474432 KLRK1P26718 216 aa23.6■■□□□ 1.37
COL7A1-209ENST00000474432 ZNF280AP59817 542 aaPredicted RBP23.6■■□□□ 1.37
COL7A1-209ENST00000474432 DCAF8Q5TAQ9 597 aa23.6■■□□□ 1.37
COL7A1-209ENST00000474432 LEMD3Q9Y2U8 911 aa23.6■■□□□ 1.37
COL7A1-209ENST00000474432 IRS2Q9Y4H2 1338 aa23.59■■□□□ 1.37
COL7A1-209ENST00000474432 E9PSI1 815 aa23.59■■□□□ 1.37
COL7A1-209ENST00000474432 ALDH1L1O75891 902 aa23.59■■□□□ 1.37
COL7A1-209ENST00000474432 CELF2O95319 508 aaKnown RBP23.59■■□□□ 1.37
COL7A1-209ENST00000474432 RBM26Q5T8P6 1007 aaKnown RBP23.59■■□□□ 1.37
COL7A1-209ENST00000474432 USP48Q86UV5 1035 aa23.59■■□□□ 1.37
COL7A1-209ENST00000474432 AGBL3Q8NEM8 1001 aa23.59■■□□□ 1.37
COL7A1-209ENST00000474432 CDCA7LQ96GN5 454 aa23.59■■□□□ 1.37
COL7A1-209ENST00000474432 KAZALD1Q96I82 304 aa23.59■■□□□ 1.37
COL7A1-209ENST00000474432 ASTN2O75129 1339 aaPredicted RBP23.59■■□□□ 1.37
COL7A1-209ENST00000474432 ANKRD18BA2A2Z9 1011 aa23.58■■□□□ 1.37
COL7A1-209ENST00000474432 USP17L3A6NCW0 530 aa23.58■■□□□ 1.37
COL7A1-209ENST00000474432 USP17L4A6NCW7 530 aa23.58■■□□□ 1.37
COL7A1-209ENST00000474432 FOXN1O15353 648 aa23.58■■□□□ 1.37
COL7A1-209ENST00000474432 CHRNDQ07001 517 aa23.58■■□□□ 1.37
COL7A1-209ENST00000474432 KIF4BQ2VIQ3 1234 aa23.58■■□□□ 1.37
COL7A1-209ENST00000474432 LMBR1LQ6UX01 489 aa23.58■■□□□ 1.37
COL7A1-209ENST00000474432 USP17L1Q7RTZ2 530 aa23.58■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms