RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 UFL1O94874 794 aa22.79■■□□□ 1.24
UPF3A-203ENST00000474056 FAM161AQ3B820 660 aa22.79■■□□□ 1.24
UPF3A-203ENST00000474056 SLC4A10Q6U841 1118 aa22.79■■□□□ 1.24
UPF3A-203ENST00000474056 PNMA8AQ86V59 439 aaPredicted RBP22.79■■□□□ 1.24
UPF3A-203ENST00000474056 TRMT2AQ8IZ69 625 aaKnown RBP22.79■■□□□ 1.24
UPF3A-203ENST00000474056 MIER1Q8N108 512 aa22.79■■□□□ 1.24
UPF3A-203ENST00000474056 DNAJC5GQ8N7S2 189 aa22.79■■□□□ 1.24
UPF3A-203ENST00000474056 GGA1Q9UJY5 639 aa22.79■■□□□ 1.24
UPF3A-203ENST00000474056 SSH1Q8WYL5 1049 aa22.78■■□□□ 1.24
UPF3A-203ENST00000474056 BSDC1Q9NW68 430 aaPredicted RBP22.78■■□□□ 1.24
UPF3A-203ENST00000474056 CLEC11AQ9Y240 323 aa22.78■■□□□ 1.24
UPF3A-203ENST00000474056 ECE2O60344 883 aa22.77■■□□□ 1.24
UPF3A-203ENST00000474056 CSF1RP07333 972 aa22.77■■□□□ 1.24
UPF3A-203ENST00000474056 ITGA6P23229 1130 aa22.77■■□□□ 1.24
UPF3A-203ENST00000474056 GMPSP49915 693 aaPredicted RBP22.77■■□□□ 1.24
UPF3A-203ENST00000474056 DOK7Q18PE1 504 aa22.77■■□□□ 1.24
UPF3A-203ENST00000474056 BCL2L13Q9BXK5 485 aa22.77■■□□□ 1.24
UPF3A-203ENST00000474056 XDHP47989 1333 aa22.77■■□□□ 1.24
UPF3A-203ENST00000474056 SRCIN1Q9C0H9 1055 aa22.76■■□□□ 1.23
UPF3A-203ENST00000474056 GPRC5DQ9NZD1 345 aa22.76■■□□□ 1.23
UPF3A-203ENST00000474056 ALDH1L1O75891 902 aa22.75■■□□□ 1.23
UPF3A-203ENST00000474056 IGHMBP2P38935 993 aaKnown RBP22.75■■□□□ 1.23
UPF3A-203ENST00000474056 TNIP1Q15025 636 aa22.75■■□□□ 1.23
UPF3A-203ENST00000474056 ZC3H12CQ9C0D7 883 aaKnown RBP22.75■■□□□ 1.23
UPF3A-203ENST00000474056 MINPP1Q9UNW1 487 aa22.75■■□□□ 1.23
UPF3A-203ENST00000474056 PASKQ96RG2 1323 aa22.75■■□□□ 1.23
UPF3A-203ENST00000474056 GRM8O00222 908 aa22.74■■□□□ 1.23
UPF3A-203ENST00000474056 PSMD14O00487 310 aa22.74■■□□□ 1.23
UPF3A-203ENST00000474056 FOXO4P98177 505 aa22.74■■□□□ 1.23
UPF3A-203ENST00000474056 MAP1SQ66K74 1059 aaPredicted RBP22.74■■□□□ 1.23
UPF3A-203ENST00000474056 KCNQ5Q9NR82 932 aa22.74■■□□□ 1.23
UPF3A-203ENST00000474056 TRPM7Q96QT4 1865 aa22.73■■□□□ 1.23
UPF3A-203ENST00000474056 WTIPA6NIX2 430 aaPredicted RBP22.73■■□□□ 1.23
UPF3A-203ENST00000474056 ITGBL1O95965 494 aaPredicted RBP22.73■■□□□ 1.23
UPF3A-203ENST00000474056 ATP2B4P23634 1241 aa22.73■■□□□ 1.23
UPF3A-203ENST00000474056 ALDH1L2Q3SY69 923 aa22.73■■□□□ 1.23
UPF3A-203ENST00000474056 EPHA10Q5JZY3 1008 aa22.73■■□□□ 1.23
UPF3A-203ENST00000474056 KLRG1Q96E93 195 aa22.73■■□□□ 1.23
UPF3A-203ENST00000474056 C9orf78Q9NZ63 289 aaPredicted RBP22.73■■□□□ 1.23
UPF3A-203ENST00000474056 ZBTB12Q9Y330 459 aaPredicted RBP22.73■■□□□ 1.23
UPF3A-203ENST00000474056 PTPRCP08575 1304 aa22.73■■□□□ 1.23
UPF3A-203ENST00000474056 ZNF646O15015 1829 aaPredicted RBP22.73■■□□□ 1.23
UPF3A-203ENST00000474056 USP50Q70EL3 339 aaPredicted RBP22.72■■□□□ 1.23
UPF3A-203ENST00000474056 ADARB2Q9NS39 739 aaKnown RBP22.72■■□□□ 1.23
UPF3A-203ENST00000474056 CHMP3Q9Y3E7 222 aa22.72■■□□□ 1.23
UPF3A-203ENST00000474056 POLR2AP24928 1970 aaKnown RBP22.72■■□□□ 1.23
UPF3A-203ENST00000474056 SHTN1A0MZ66 631 aa22.71■■□□□ 1.23
UPF3A-203ENST00000474056 ANKRD18BA2A2Z9 1011 aa22.71■■□□□ 1.23
UPF3A-203ENST00000474056 CNTROBQ8N137 903 aa22.71■■□□□ 1.23
UPF3A-203ENST00000474056 MPHOSPH8Q99549 860 aa22.71■■□□□ 1.23
UPF3A-203ENST00000474056 CCT4P50991 539 aaKnown RBP22.7■■□□□ 1.22
UPF3A-203ENST00000474056 LMBR1LQ6UX01 489 aa22.7■■□□□ 1.22
UPF3A-203ENST00000474056 SMC4Q9NTJ3 1288 aa22.7■■□□□ 1.22
UPF3A-203ENST00000474056 MED23Q9ULK4 1368 aa22.7■■□□□ 1.22
UPF3A-203ENST00000474056 G3V3G9 751 aa22.69■■□□□ 1.22
UPF3A-203ENST00000474056 IFIT5Q13325 482 aaKnown RBP22.69■■□□□ 1.22
UPF3A-203ENST00000474056 DCAF8Q5TAQ9 597 aa22.69■■□□□ 1.22
UPF3A-203ENST00000474056 MICALL2Q8IY33 904 aa22.69■■□□□ 1.22
UPF3A-203ENST00000474056 SUCLG2Q96I99 432 aa22.69■■□□□ 1.22
UPF3A-203ENST00000474056 CNOT7Q9UIV1 285 aaKnown RBP22.69■■□□□ 1.22
UPF3A-203ENST00000474056 CT47B1P0C2W7 299 aaPredicted RBP22.68■■□□□ 1.22
UPF3A-203ENST00000474056 NBPF7P0C2Y1 421 aaPredicted RBP22.68■■□□□ 1.22
UPF3A-203ENST00000474056 TRPM4Q8TD43 1214 aa22.68■■□□□ 1.22
UPF3A-203ENST00000474056 CREBZFQ9NS37 354 aa22.68■■□□□ 1.22
UPF3A-203ENST00000474056 UTYO14607 1347 aa22.67■■□□□ 1.22
UPF3A-203ENST00000474056 CHRNDQ07001 517 aa22.67■■□□□ 1.22
UPF3A-203ENST00000474056 DPF2Q92785 391 aa22.67■■□□□ 1.22
UPF3A-203ENST00000474056 KAZALD1Q96I82 304 aa22.67■■□□□ 1.22
UPF3A-203ENST00000474056 HIRAP54198 1017 aaPredicted RBP22.66■■□□□ 1.22
UPF3A-203ENST00000474056 ZNF594Q96JF6 807 aaPredicted RBP22.66■■□□□ 1.22
UPF3A-203ENST00000474056 LEMD3Q9Y2U8 911 aa22.66■■□□□ 1.22
UPF3A-203ENST00000474056 VIL1P09327 827 aaKnown RBP22.65■■□□□ 1.22
UPF3A-203ENST00000474056 RPS12P25398 132 aaKnown RBP22.65■■□□□ 1.22
UPF3A-203ENST00000474056 FMR1Q06787 632 aaKnown RBP eCLIP22.65■■□□□ 1.22
UPF3A-203ENST00000474056 TXNRD3Q86VQ6 643 aa22.65■■□□□ 1.22
UPF3A-203ENST00000474056 ANKRD2Q9GZV1 360 aa22.65■■□□□ 1.22
UPF3A-203ENST00000474056 ZNF804BA4D1E1 1349 aa22.64■■□□□ 1.22
UPF3A-203ENST00000474056 H7C1D1 291 aa22.64■■□□□ 1.21
UPF3A-203ENST00000474056 KLRK1P26718 216 aa22.64■■□□□ 1.21
UPF3A-203ENST00000474056 CCDC57Q2TAC2 916 aa22.64■■□□□ 1.21
UPF3A-203ENST00000474056 SAMD7Q7Z3H4 446 aa22.64■■□□□ 1.21
UPF3A-203ENST00000474056 JMYQ8N9B5 988 aa22.64■■□□□ 1.21
UPF3A-203ENST00000474056 TMEM88BA6NKF7 163 aa22.63■■□□□ 1.21
UPF3A-203ENST00000474056 PODNQ7Z5L7 613 aa22.63■■□□□ 1.21
UPF3A-203ENST00000474056 NOB1Q9ULX3 412 aaKnown RBP22.63■■□□□ 1.21
UPF3A-203ENST00000474056 ZNF609O15014 1411 aa22.63■■□□□ 1.21
UPF3A-203ENST00000474056 SNAP23O00161 211 aa22.62■■□□□ 1.21
UPF3A-203ENST00000474056 TAF5LO75529 589 aa22.62■■□□□ 1.21
UPF3A-203ENST00000474056 EGFRP00533 1210 aa22.62■■□□□ 1.21
UPF3A-203ENST00000474056 RARSP54136 660 aaKnown RBP22.62■■□□□ 1.21
UPF3A-203ENST00000474056 TAF7LQ5H9L4 462 aa22.62■■□□□ 1.21
UPF3A-203ENST00000474056 HELBQ8NG08 1087 aaPredicted RBP22.62■■□□□ 1.21
UPF3A-203ENST00000474056 BICC1Q9H694 974 aaKnown RBP22.62■■□□□ 1.21
UPF3A-203ENST00000474056 MKRN1Q9UHC7 482 aaKnown RBP22.62■■□□□ 1.21
UPF3A-203ENST00000474056 BRPF1P55201 1214 aaPredicted RBP22.61■■□□□ 1.21
UPF3A-203ENST00000474056 HNRNPUQ00839 825 aaKnown RBP eCLIP22.61■■□□□ 1.21
UPF3A-203ENST00000474056 TBC1D10BQ4KMP7 808 aaPredicted RBP22.61■■□□□ 1.21
UPF3A-203ENST00000474056 RSBN1LQ6PCB5 846 aaPredicted RBP22.61■■□□□ 1.21
UPF3A-203ENST00000474056 USP44Q9H0E7 712 aa22.61■■□□□ 1.21
UPF3A-203ENST00000474056 PGAP2Q9UHJ9 254 aa22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms