RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 NBPF7P0C2Y1 421 aaPredicted RBP19.1■□□□□ 0.65
LIMS1-212ENST00000474038 SCNN1DP51172 638 aa19.1■□□□□ 0.65
LIMS1-212ENST00000474038 KIAA2012Q0VF49 1180 aa19.1■□□□□ 0.65
LIMS1-212ENST00000474038 EPHA10Q5JZY3 1008 aa19.1■□□□□ 0.65
LIMS1-212ENST00000474038 NSFL1CQ9UNZ2 370 aaKnown RBP19.1■□□□□ 0.65
LIMS1-212ENST00000474038 CLEC11AQ9Y240 323 aa19.1■□□□□ 0.65
LIMS1-212ENST00000474038 ADAMTSL1Q8N6G6 1762 aa19.1■□□□□ 0.65
LIMS1-212ENST00000474038 GPSM2P81274 684 aa19.09■□□□□ 0.65
LIMS1-212ENST00000474038 CXCL9Q07325 125 aa19.09■□□□□ 0.65
LIMS1-212ENST00000474038 FAM161AQ3B820 660 aa19.09■□□□□ 0.65
LIMS1-212ENST00000474038 CDC5LQ99459 802 aaKnown RBP19.09■□□□□ 0.65
LIMS1-212ENST00000474038 ZNRF3Q9ULT6 936 aa19.09■□□□□ 0.65
LIMS1-212ENST00000474038 IPO8O15397 1037 aaKnown RBP19.08■□□□□ 0.64
LIMS1-212ENST00000474038 LMOD1P29536 600 aaPredicted RBP19.08■□□□□ 0.64
LIMS1-212ENST00000474038 EPS15P42566 896 aa19.08■□□□□ 0.64
LIMS1-212ENST00000474038 CCT4P50991 539 aaKnown RBP19.08■□□□□ 0.64
LIMS1-212ENST00000474038 ANKRD18AQ8IVF6 992 aa19.08■□□□□ 0.64
LIMS1-212ENST00000474038 FRAT1Q92837 279 aaPredicted RBP19.08■□□□□ 0.64
LIMS1-212ENST00000474038 KAZALD1Q96I82 304 aa19.08■□□□□ 0.64
LIMS1-212ENST00000474038 SUCLG2Q96I99 432 aa19.08■□□□□ 0.64
LIMS1-212ENST00000474038 USP44Q9H0E7 712 aa19.08■□□□□ 0.64
LIMS1-212ENST00000474038 A0A1B0GUL6 1792 aa19.07■□□□□ 0.64
LIMS1-212ENST00000474038 ITGA6P23229 1130 aa19.07■□□□□ 0.64
LIMS1-212ENST00000474038 PNMA8AQ86V59 439 aaPredicted RBP19.07■□□□□ 0.64
LIMS1-212ENST00000474038 POLLQ9UGP5 575 aa19.07■□□□□ 0.64
LIMS1-212ENST00000474038 YDJCA8MPS7 323 aa19.06■□□□□ 0.64
LIMS1-212ENST00000474038 C6orf229H3BNL8 230 aa19.06■□□□□ 0.64
LIMS1-212ENST00000474038 RAD17O75943 681 aa19.06■□□□□ 0.64
LIMS1-212ENST00000474038 TRIM27P14373 513 aa19.06■□□□□ 0.64
LIMS1-212ENST00000474038 LMBR1LQ6UX01 489 aa19.06■□□□□ 0.64
LIMS1-212ENST00000474038 ATF7IPQ6VMQ6 1270 aa19.06■□□□□ 0.64
LIMS1-212ENST00000474038 GPR101Q96P66 508 aaPredicted RBP19.06■□□□□ 0.64
LIMS1-212ENST00000474038 TNNQ9UQP3 1299 aa19.06■□□□□ 0.64
LIMS1-212ENST00000474038 PASKQ96RG2 1323 aa19.05■□□□□ 0.64
LIMS1-212ENST00000474038 RIMBP2O15034 1052 aa19.05■□□□□ 0.64
LIMS1-212ENST00000474038 WASHC4Q2M389 1173 aa19.05■□□□□ 0.64
LIMS1-212ENST00000474038 MAP1SQ66K74 1059 aaPredicted RBP19.05■□□□□ 0.64
LIMS1-212ENST00000474038 CIAPIN1Q6FI81 312 aa19.05■□□□□ 0.64
LIMS1-212ENST00000474038 ANKRD18BA2A2Z9 1011 aa19.04■□□□□ 0.64
LIMS1-212ENST00000474038 ITGBL1O95965 494 aaPredicted RBP19.04■□□□□ 0.64
LIMS1-212ENST00000474038 GMPSP49915 693 aaPredicted RBP19.04■□□□□ 0.64
LIMS1-212ENST00000474038 ZKSCAN2Q63HK3 967 aa19.04■□□□□ 0.64
LIMS1-212ENST00000474038 INTS3Q68E01 1043 aaKnown RBP19.04■□□□□ 0.64
LIMS1-212ENST00000474038 TBC1D16Q8TBP0 767 aa19.04■□□□□ 0.64
LIMS1-212ENST00000474038 DBNDD1Q9H9R9 158 aa19.04■□□□□ 0.64
LIMS1-212ENST00000474038 BSDC1Q9NW68 430 aaPredicted RBP19.04■□□□□ 0.64
LIMS1-212ENST00000474038 CHMP3Q9Y3E7 222 aa19.04■□□□□ 0.64
LIMS1-212ENST00000474038 IGHMBP2P38935 993 aaKnown RBP19.03■□□□□ 0.64
LIMS1-212ENST00000474038 IFIT5Q13325 482 aaKnown RBP19.03■□□□□ 0.64
LIMS1-212ENST00000474038 CNTROBQ8N137 903 aa19.03■□□□□ 0.64
LIMS1-212ENST00000474038 JMYQ8N9B5 988 aa19.03■□□□□ 0.64
LIMS1-212ENST00000474038 BICC1Q9H694 974 aaKnown RBP19.03■□□□□ 0.64
LIMS1-212ENST00000474038 CREBZFQ9NS37 354 aa19.03■□□□□ 0.64
LIMS1-212ENST00000474038 PODXL2Q9NZ53 605 aa19.03■□□□□ 0.64
LIMS1-212ENST00000474038 GPRC5DQ9NZD1 345 aa19.03■□□□□ 0.64
LIMS1-212ENST00000474038 PCNTO95613 3336 aa19.02■□□□□ 0.64
LIMS1-212ENST00000474038 DOK7Q18PE1 504 aa19.02■□□□□ 0.64
LIMS1-212ENST00000474038 RABL6Q3YEC7 729 aaPredicted RBP19.02■□□□□ 0.64
LIMS1-212ENST00000474038 ANKRD44Q8N8A2 993 aa19.02■□□□□ 0.64
LIMS1-212ENST00000474038 CLUAP1Q96AJ1 413 aa19.02■□□□□ 0.64
LIMS1-212ENST00000474038 ANKIB1Q9P2G1 1089 aa19.02■□□□□ 0.64
LIMS1-212ENST00000474038 MINPP1Q9UNW1 487 aa19.02■□□□□ 0.64
LIMS1-212ENST00000474038 UFL1O94874 794 aa19.01■□□□□ 0.63
LIMS1-212ENST00000474038 TNIP1Q15025 636 aa19.01■□□□□ 0.63
LIMS1-212ENST00000474038 CCDC57Q2TAC2 916 aa19.01■□□□□ 0.63
LIMS1-212ENST00000474038 USP50Q70EL3 339 aaPredicted RBP19.01■□□□□ 0.63
LIMS1-212ENST00000474038 EYA3Q99504 573 aa19.01■□□□□ 0.63
LIMS1-212ENST00000474038 MPHOSPH8Q99549 860 aa19.01■□□□□ 0.63
LIMS1-212ENST00000474038 XDHP47989 1333 aa19■□□□□ 0.63
LIMS1-212ENST00000474038 ECE2O60344 883 aa19■□□□□ 0.63
LIMS1-212ENST00000474038 ZNF594Q96JF6 807 aaPredicted RBP19■□□□□ 0.63
LIMS1-212ENST00000474038 YTHDC1Q96MU7 727 aaKnown RBP19■□□□□ 0.63
LIMS1-212ENST00000474038 ADARB2Q9NS39 739 aaKnown RBP19■□□□□ 0.63
LIMS1-212ENST00000474038 MKRN1Q9UHC7 482 aaKnown RBP19■□□□□ 0.63
LIMS1-212ENST00000474038 GGA1Q9UJY5 639 aa19■□□□□ 0.63
LIMS1-212ENST00000474038 SCN9AQ15858 1988 aa19■□□□□ 0.63
LIMS1-212ENST00000474038 SHTN1A0MZ66 631 aa18.99■□□□□ 0.63
LIMS1-212ENST00000474038 PSMD14O00487 310 aa18.99■□□□□ 0.63
LIMS1-212ENST00000474038 UBTFL1P0CB47 393 aaPredicted RBP18.99■□□□□ 0.63
LIMS1-212ENST00000474038 MEIS3Q99687 375 aa18.99■□□□□ 0.63
LIMS1-212ENST00000474038 KCNQ5Q9NR82 932 aa18.99■□□□□ 0.63
LIMS1-212ENST00000474038 ZBTB12Q9Y330 459 aaPredicted RBP18.99■□□□□ 0.63
LIMS1-212ENST00000474038 PSME4Q14997 1843 aa18.98■□□□□ 0.63
LIMS1-212ENST00000474038 WTIPA6NIX2 430 aaPredicted RBP18.98■□□□□ 0.63
LIMS1-212ENST00000474038 TMEM88BA6NKF7 163 aa18.98■□□□□ 0.63
LIMS1-212ENST00000474038 FMR1Q06787 632 aaKnown RBP eCLIP18.98■□□□□ 0.63
LIMS1-212ENST00000474038 TMEM57Q8N5G2 664 aa18.98■□□□□ 0.63
LIMS1-212ENST00000474038 ZC3H12CQ9C0D7 883 aaKnown RBP18.98■□□□□ 0.63
LIMS1-212ENST00000474038 RCAN3Q9UKA8 241 aa18.98■□□□□ 0.63
LIMS1-212ENST00000474038 ATP2B4P23634 1241 aa18.97■□□□□ 0.63
LIMS1-212ENST00000474038 TAF7LQ5H9L4 462 aa18.97■□□□□ 0.63
LIMS1-212ENST00000474038 TRPM4Q8TD43 1214 aa18.97■□□□□ 0.63
LIMS1-212ENST00000474038 CHRNDQ07001 517 aa18.96■□□□□ 0.63
LIMS1-212ENST00000474038 ANKRD2Q9GZV1 360 aa18.96■□□□□ 0.63
LIMS1-212ENST00000474038 CNOT7Q9UIV1 285 aaKnown RBP18.96■□□□□ 0.63
LIMS1-212ENST00000474038 LRRFIP2Q9Y608 721 aaKnown RBP18.96■□□□□ 0.63
LIMS1-212ENST00000474038 CNTNAP1P78357 1384 aa18.95■□□□□ 0.62
LIMS1-212ENST00000474038 TRAF5O00463 557 aa18.95■□□□□ 0.62
LIMS1-212ENST00000474038 GNAI3P08754 354 aa18.95■□□□□ 0.62
LIMS1-212ENST00000474038 RLBP1P12271 317 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms