RNA–Protein interactions for RNA: ENST00000473295.2

SCN1A-205, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 544 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-205ENST00000473295 GTF3C3Q9Y5Q9 886 aa6.52□□□□□ -1.37
SCN1A-205ENST00000473295 TRIP4Q15650 581 aaPredicted RBP6.51□□□□□ -1.37
SCN1A-205ENST00000473295 OR13H1Q8NG92 308 aa6.51□□□□□ -1.37
SCN1A-205ENST00000473295 NSUN5Q96P11 429 aaKnown RBP6.51□□□□□ -1.37
SCN1A-205ENST00000473295 J3QW42 95 aa6.5□□□□□ -1.37
SCN1A-205ENST00000473295 PPP1R15AO75807 674 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-205ENST00000473295 HYAL2Q12891 473 aa6.5□□□□□ -1.37
SCN1A-205ENST00000473295 ZMYM1Q5SVZ6 1142 aa6.5□□□□□ -1.37
SCN1A-205ENST00000473295 TTC39BQ5VTQ0 682 aaPredicted RBP6.5□□□□□ -1.37
SCN1A-205ENST00000473295 Q8N3U1 123 aa6.5□□□□□ -1.37
SCN1A-205ENST00000473295 PCSK2P16519 638 aa6.49□□□□□ -1.37
SCN1A-205ENST00000473295 ITGB7P26010 798 aa6.49□□□□□ -1.37
SCN1A-205ENST00000473295 GDF6Q6KF10 455 aaPredicted RBP6.49□□□□□ -1.37
SCN1A-205ENST00000473295 PDE12Q6L8Q7 609 aaKnown RBP6.49□□□□□ -1.37
SCN1A-205ENST00000473295 CAPN12Q6ZSI9 719 aa6.49□□□□□ -1.37
SCN1A-205ENST00000473295 GPR152Q8TDT2 470 aa6.49□□□□□ -1.37
SCN1A-205ENST00000473295 TP53INP1Q96A56 240 aa6.49□□□□□ -1.37
SCN1A-205ENST00000473295 MRPL18Q9H0U6 180 aaKnown RBP6.49□□□□□ -1.37
SCN1A-205ENST00000473295 SMNDC1O75940 238 aaKnown RBP eCLIP6.48□□□□□ -1.37
SCN1A-205ENST00000473295 XP32Q5T750 250 aa6.48□□□□□ -1.37
SCN1A-205ENST00000473295 WFDC12Q8WWY7 111 aa6.48□□□□□ -1.37
SCN1A-205ENST00000473295 ABI2Q9NYB9 513 aaPredicted RBP6.48□□□□□ -1.37
SCN1A-205ENST00000473295 FAM177BA6PVY3 158 aa6.47□□□□□ -1.37
SCN1A-205ENST00000473295 DLL1O00548 723 aa6.47□□□□□ -1.37
SCN1A-205ENST00000473295 SCNN1AP37088 669 aa6.47□□□□□ -1.37
SCN1A-205ENST00000473295 FAM26DQ5JW98 314 aa6.47□□□□□ -1.37
SCN1A-205ENST00000473295 PRSS36Q5K4E3 855 aa6.47□□□□□ -1.37
SCN1A-205ENST00000473295 IL22RA1Q8N6P7 574 aa6.47□□□□□ -1.37
SCN1A-205ENST00000473295 TTC16Q8NEE8 873 aa6.47□□□□□ -1.37
SCN1A-205ENST00000473295 HELQQ8TDG4 1101 aa6.47□□□□□ -1.37
SCN1A-205ENST00000473295 SSBP4Q9BWG4 385 aaPredicted RBP6.47□□□□□ -1.37
SCN1A-205ENST00000473295 MTMR7Q9Y216 660 aa6.47□□□□□ -1.37
SCN1A-205ENST00000473295 ARID3CA6NKF2 412 aa6.46□□□□□ -1.38
SCN1A-205ENST00000473295 DEAF1O75398 565 aaPredicted RBP6.46□□□□□ -1.38
SCN1A-205ENST00000473295 KIF4AO95239 1232 aa6.46□□□□□ -1.38
SCN1A-205ENST00000473295 IREB2P48200 963 aaKnown RBP6.46□□□□□ -1.38
SCN1A-205ENST00000473295 ALKBH2Q6NS38 261 aa6.46□□□□□ -1.38
SCN1A-205ENST00000473295 TMEM130Q8N3G9 435 aa6.46□□□□□ -1.38
SCN1A-205ENST00000473295 PPME1Q9Y570 386 aa6.46□□□□□ -1.38
SCN1A-205ENST00000473295 SCO2A0A1W2PP80 73 aa6.45□□□□□ -1.38
SCN1A-205ENST00000473295 NOS3P29474 1203 aa6.45□□□□□ -1.38
SCN1A-205ENST00000473295 ZNF438Q7Z4V0 828 aa6.45□□□□□ -1.38
SCN1A-205ENST00000473295 CCDC82Q8N4S0 544 aa6.45□□□□□ -1.38
SCN1A-205ENST00000473295 NUDT16Q96DE0 195 aaKnown RBP6.45□□□□□ -1.38
SCN1A-205ENST00000473295 AKTIPQ9H8T0 292 aa6.45□□□□□ -1.38
SCN1A-205ENST00000473295 SLAIN2Q9P270 581 aa6.45□□□□□ -1.38
SCN1A-205ENST00000473295 SEPT3Q9UH03 358 aa6.45□□□□□ -1.38
SCN1A-205ENST00000473295 TRIM33Q9UPN9 1127 aa6.45□□□□□ -1.38
SCN1A-205ENST00000473295 ZBTB39O15060 712 aa6.44□□□□□ -1.38
SCN1A-205ENST00000473295 SETDB1Q15047 1291 aa6.44□□□□□ -1.38
SCN1A-205ENST00000473295 NOM1Q5C9Z4 860 aaKnown RBP6.44□□□□□ -1.38
SCN1A-205ENST00000473295 CEP135Q66GS9 1140 aa6.44□□□□□ -1.38
SCN1A-205ENST00000473295 FAM117BQ6P1L5 589 aa6.44□□□□□ -1.38
SCN1A-205ENST00000473295 XKR5Q6UX68 686 aa6.44□□□□□ -1.38
SCN1A-205ENST00000473295 NCAPG2Q86XI2 1143 aa6.44□□□□□ -1.38
SCN1A-205ENST00000473295 PMEPA1Q969W9 287 aa6.44□□□□□ -1.38
SCN1A-205ENST00000473295 ELP3Q9H9T3 547 aa6.44□□□□□ -1.38
SCN1A-205ENST00000473295 CDC27P30260 824 aa6.43□□□□□ -1.38
SCN1A-205ENST00000473295 SLC51AQ86UW1 340 aa6.43□□□□□ -1.38
SCN1A-205ENST00000473295 TMEM88BA6NKF7 163 aa6.42□□□□□ -1.38
SCN1A-205ENST00000473295 F8W735 103 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-205ENST00000473295 PTPRAP18433 802 aa6.42□□□□□ -1.38
SCN1A-205ENST00000473295 SSFA2P28290 1259 aa6.42□□□□□ -1.38
SCN1A-205ENST00000473295 MZF1P28698 734 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-205ENST00000473295 COL13A1Q5TAT6 717 aaPredicted RBP6.42□□□□□ -1.38
SCN1A-205ENST00000473295 DZIP1LQ8IYY4 767 aaKnown RBP6.42□□□□□ -1.38
SCN1A-205ENST00000473295 KLHL23Q8NBE8 558 aa6.42□□□□□ -1.38
SCN1A-205ENST00000473295 EDEM1Q92611 657 aa6.42□□□□□ -1.38
SCN1A-205ENST00000473295 PBX4Q9BYU1 374 aa6.42□□□□□ -1.38
SCN1A-205ENST00000473295 CABP4P57796 275 aa6.41□□□□□ -1.38
SCN1A-205ENST00000473295 ATP11AP98196 1134 aa6.41□□□□□ -1.38
SCN1A-205ENST00000473295 DNM1Q05193 864 aaKnown RBP6.41□□□□□ -1.38
SCN1A-205ENST00000473295 EHHADHQ08426 723 aa6.41□□□□□ -1.38
SCN1A-205ENST00000473295 PRR23CQ6ZRP0 262 aa6.41□□□□□ -1.38
SCN1A-205ENST00000473295 CEP120Q8N960 986 aa6.41□□□□□ -1.38
SCN1A-205ENST00000473295 GTF3C2Q8WUA4 911 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-205ENST00000473295 MEGF10Q96KG7 1140 aa6.41□□□□□ -1.38
SCN1A-205ENST00000473295 LACRTQ9GZZ8 138 aa6.41□□□□□ -1.38
SCN1A-205ENST00000473295 RASSF4Q9H2L5 321 aa6.41□□□□□ -1.38
SCN1A-205ENST00000473295 TMEM63CQ9P1W3 806 aa6.41□□□□□ -1.38
SCN1A-205ENST00000473295 LINC01387J3KSC0 135 aa6.4□□□□□ -1.38
SCN1A-205ENST00000473295 FAM13AO94988 1023 aa6.4□□□□□ -1.38
SCN1A-205ENST00000473295 PDGFAP04085 211 aa6.4□□□□□ -1.38
SCN1A-205ENST00000473295 CES1P23141 567 aa6.4□□□□□ -1.38
SCN1A-205ENST00000473295 MPSTP25325 297 aa6.4□□□□□ -1.38
SCN1A-205ENST00000473295 CD68P34810 354 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-205ENST00000473295 USP5P45974 858 aa6.4□□□□□ -1.38
SCN1A-205ENST00000473295 EIF1AXP47813 144 aaKnown RBP6.4□□□□□ -1.38
SCN1A-205ENST00000473295 SF3B2Q13435 895 aaKnown RBP6.4□□□□□ -1.38
SCN1A-205ENST00000473295 ARTNQ5T4W7 220 aa6.4□□□□□ -1.38
SCN1A-205ENST00000473295 B4GALNT3Q6L9W6 998 aa6.4□□□□□ -1.38
SCN1A-205ENST00000473295 Q6ZS46 218 aa6.4□□□□□ -1.38
SCN1A-205ENST00000473295 ATCAYQ86WG3 371 aa6.4□□□□□ -1.38
SCN1A-205ENST00000473295 WNT8BQ93098 351 aa6.4□□□□□ -1.38
SCN1A-205ENST00000473295 CEP41Q9BYV8 373 aa6.4□□□□□ -1.38
SCN1A-205ENST00000473295 ZFP64Q9NPA5 681 aa6.4□□□□□ -1.38
SCN1A-205ENST00000473295 SALL4Q9UJQ4 1053 aa6.4□□□□□ -1.38
SCN1A-205ENST00000473295 CYP2E1P05181 493 aaPredicted RBP6.39□□□□□ -1.39
SCN1A-205ENST00000473295 NPR3P17342 541 aa6.39□□□□□ -1.39
SCN1A-205ENST00000473295 LRP8Q14114 963 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms