RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 HIRAP54198 1017 aaPredicted RBP20.13■□□□□ 0.81
CCDC88B-205ENST00000472524 RPS8P62241 208 aaKnown RBP20.13■□□□□ 0.81
CCDC88B-205ENST00000472524 GPSM2P81274 684 aa20.13■□□□□ 0.81
CCDC88B-205ENST00000472524 FLIIQ13045 1269 aa20.13■□□□□ 0.81
CCDC88B-205ENST00000472524 TNIP1Q15025 636 aa20.13■□□□□ 0.81
CCDC88B-205ENST00000472524 CWF19L2Q2TBE0 894 aaKnown RBP20.13■□□□□ 0.81
CCDC88B-205ENST00000472524 CCDC152Q4G0S7 254 aa20.13■□□□□ 0.81
CCDC88B-205ENST00000472524 TRPM4Q8TD43 1214 aa20.13■□□□□ 0.81
CCDC88B-205ENST00000472524 BCL2L13Q9BXK5 485 aa20.13■□□□□ 0.81
CCDC88B-205ENST00000472524 GLIS2Q9BZE0 524 aaPredicted RBP20.13■□□□□ 0.81
CCDC88B-205ENST00000472524 SPINK5Q9NQ38 1064 aaPredicted RBP20.13■□□□□ 0.81
CCDC88B-205ENST00000472524 C6orf229H3BNL8 230 aa20.12■□□□□ 0.81
CCDC88B-205ENST00000472524 PGAP2Q9UHJ9 254 aa20.12■□□□□ 0.81
CCDC88B-205ENST00000472524 TRPM7Q96QT4 1865 aa20.11■□□□□ 0.81
CCDC88B-205ENST00000472524 CDHR2Q9BYE9 1310 aa20.11■□□□□ 0.81
CCDC88B-205ENST00000472524 NEURL1BA8MQ27 555 aa20.11■□□□□ 0.81
CCDC88B-205ENST00000472524 VAMP4O75379 141 aa20.11■□□□□ 0.81
CCDC88B-205ENST00000472524 CELF2O95319 508 aaKnown RBP20.11■□□□□ 0.81
CCDC88B-205ENST00000472524 ECE1P42892 770 aa20.11■□□□□ 0.81
CCDC88B-205ENST00000472524 FKBP5Q13451 457 aaPredicted RBP20.11■□□□□ 0.81
CCDC88B-205ENST00000472524 GPR101Q96P66 508 aaPredicted RBP20.11■□□□□ 0.81
CCDC88B-205ENST00000472524 CNOT7Q9UIV1 285 aaKnown RBP20.11■□□□□ 0.81
CCDC88B-205ENST00000472524 RIMBP2O15034 1052 aa20.1■□□□□ 0.81
CCDC88B-205ENST00000472524 CTSWP56202 376 aa20.1■□□□□ 0.81
CCDC88B-205ENST00000472524 WASHC4Q2M389 1173 aa20.1■□□□□ 0.81
CCDC88B-205ENST00000472524 MYH16Q9H6N6 1097 aa20.1■□□□□ 0.81
CCDC88B-205ENST00000472524 POLLQ9UGP5 575 aa20.1■□□□□ 0.81
CCDC88B-205ENST00000472524 ZBTB12Q9Y330 459 aaPredicted RBP20.1■□□□□ 0.81
CCDC88B-205ENST00000472524 SCN9AQ15858 1988 aa20.1■□□□□ 0.81
CCDC88B-205ENST00000472524 AOC2O75106 756 aa20.09■□□□□ 0.81
CCDC88B-205ENST00000472524 SAPCD2Q86UD0 394 aa20.09■□□□□ 0.81
CCDC88B-205ENST00000472524 MICALL2Q8IY33 904 aa20.09■□□□□ 0.81
CCDC88B-205ENST00000472524 DBNDD1Q9H9R9 158 aa20.09■□□□□ 0.81
CCDC88B-205ENST00000472524 PSMD14O00487 310 aa20.08■□□□□ 0.81
CCDC88B-205ENST00000472524 UBE3BQ7Z3V4 1068 aa20.08■□□□□ 0.81
CCDC88B-205ENST00000472524 TBC1D16Q8TBP0 767 aa20.08■□□□□ 0.81
CCDC88B-205ENST00000472524 ZC3H15Q8WU90 426 aaKnown RBP20.08■□□□□ 0.81
CCDC88B-205ENST00000472524 DNAAF4Q8WXU2 420 aa20.08■□□□□ 0.81
CCDC88B-205ENST00000472524 EYA3Q99504 573 aa20.08■□□□□ 0.81
CCDC88B-205ENST00000472524 ZNF408Q9H9D4 720 aa20.08■□□□□ 0.81
CCDC88B-205ENST00000472524 THSD7BQ9C0I4 1608 aa20.07■□□□□ 0.8
CCDC88B-205ENST00000472524 H7C1D1 291 aa20.07■□□□□ 0.8
CCDC88B-205ENST00000472524 DLK2Q6UY11 383 aa20.07■□□□□ 0.8
CCDC88B-205ENST00000472524 ANKRD18AQ8IVF6 992 aa20.07■□□□□ 0.8
CCDC88B-205ENST00000472524 KCNQ5Q9NR82 932 aa20.07■□□□□ 0.8
CCDC88B-205ENST00000472524 ANKIB1Q9P2G1 1089 aa20.07■□□□□ 0.8
CCDC88B-205ENST00000472524 UFL1O94874 794 aa20.06■□□□□ 0.8
CCDC88B-205ENST00000472524 DOK7Q18PE1 504 aa20.06■□□□□ 0.8
CCDC88B-205ENST00000472524 CDC37L1Q7L3B6 337 aa20.06■□□□□ 0.8
CCDC88B-205ENST00000472524 SAMD7Q7Z3H4 446 aa20.06■□□□□ 0.8
CCDC88B-205ENST00000472524 BEGAINQ9BUH8 593 aa20.06■□□□□ 0.8
CCDC88B-205ENST00000472524 TSKSQ9UJT2 592 aa20.06■□□□□ 0.8
CCDC88B-205ENST00000472524 POLR2AP24928 1970 aaKnown RBP20.06■□□□□ 0.8
CCDC88B-205ENST00000472524 PSME4Q14997 1843 aa20.06■□□□□ 0.8
CCDC88B-205ENST00000472524 ECE2O60344 883 aa20.05■□□□□ 0.8
CCDC88B-205ENST00000472524 EGFRP00533 1210 aa20.05■□□□□ 0.8
CCDC88B-205ENST00000472524 GCKRQ14397 625 aa20.05■□□□□ 0.8
CCDC88B-205ENST00000472524 USP48Q86UV5 1035 aa20.05■□□□□ 0.8
CCDC88B-205ENST00000472524 TTLL11Q8NHH1 800 aa20.05■□□□□ 0.8
CCDC88B-205ENST00000472524 CDC5LQ99459 802 aaKnown RBP20.05■□□□□ 0.8
CCDC88B-205ENST00000472524 GREM2Q9H772 168 aa20.05■□□□□ 0.8
CCDC88B-205ENST00000472524 PODXL2Q9NZ53 605 aa20.05■□□□□ 0.8
CCDC88B-205ENST00000472524 GGA1Q9UJY5 639 aa20.05■□□□□ 0.8
CCDC88B-205ENST00000472524 H7C1W4 665 aa20.04■□□□□ 0.8
CCDC88B-205ENST00000472524 MAP2K2P36507 400 aa20.04■□□□□ 0.8
CCDC88B-205ENST00000472524 TBC1D10BQ4KMP7 808 aaPredicted RBP20.04■□□□□ 0.8
CCDC88B-205ENST00000472524 DPF2Q92785 391 aa20.04■□□□□ 0.8
CCDC88B-205ENST00000472524 ZC3H12CQ9C0D7 883 aaKnown RBP20.04■□□□□ 0.8
CCDC88B-205ENST00000472524 RTL9Q8NET4 1388 aa20.04■□□□□ 0.8
CCDC88B-205ENST00000472524 F6X3S4 739 aa20.03■□□□□ 0.8
CCDC88B-205ENST00000472524 LINS1Q8NG48 757 aa20.03■□□□□ 0.8
CCDC88B-205ENST00000472524 ABHD8Q96I13 439 aa20.03■□□□□ 0.8
CCDC88B-205ENST00000472524 HHIPL1Q96JK4 782 aa20.03■□□□□ 0.8
CCDC88B-205ENST00000472524 XDHP47989 1333 aa20.02■□□□□ 0.8
CCDC88B-205ENST00000472524 ZNF521Q96K83 1311 aa20.02■□□□□ 0.8
CCDC88B-205ENST00000472524 G3V3G9 751 aa20.02■□□□□ 0.8
CCDC88B-205ENST00000472524 DCAF8Q5TAQ9 597 aa20.02■□□□□ 0.8
CCDC88B-205ENST00000472524 RBM26Q5T8P6 1007 aaKnown RBP20.01■□□□□ 0.79
CCDC88B-205ENST00000472524 RPS12P25398 132 aaKnown RBP20■□□□□ 0.79
CCDC88B-205ENST00000472524 CASP7P55210 303 aa20■□□□□ 0.79
CCDC88B-205ENST00000472524 FAM161AQ3B820 660 aa20■□□□□ 0.79
CCDC88B-205ENST00000472524 KRT26Q7Z3Y9 468 aa20■□□□□ 0.79
CCDC88B-205ENST00000472524 PLA2G12BQ9BX93 195 aa20■□□□□ 0.79
CCDC88B-205ENST00000472524 A0A1B0GUL6 1792 aa19.99■□□□□ 0.79
CCDC88B-205ENST00000472524 ADM5C9JUS6 153 aa19.99■□□□□ 0.79
CCDC88B-205ENST00000472524 ATP2B4P23634 1241 aa19.99■□□□□ 0.79
CCDC88B-205ENST00000472524 ZIC5Q96T25 663 aa19.99■□□□□ 0.79
CCDC88B-205ENST00000472524 BSDC1Q9NW68 430 aaPredicted RBP19.99■□□□□ 0.79
CCDC88B-205ENST00000472524 ITGA6P23229 1130 aa19.98■□□□□ 0.79
CCDC88B-205ENST00000472524 IGHMBP2P38935 993 aaKnown RBP19.98■□□□□ 0.79
CCDC88B-205ENST00000472524 BRPF1P55201 1214 aaPredicted RBP19.98■□□□□ 0.79
CCDC88B-205ENST00000472524 HUNKP57058 714 aa19.98■□□□□ 0.79
CCDC88B-205ENST00000472524 BEND3Q5T5X7 828 aa19.98■□□□□ 0.79
CCDC88B-205ENST00000472524 MINPP1Q9UNW1 487 aa19.98■□□□□ 0.79
CCDC88B-205ENST00000472524 VIL1P09327 827 aaKnown RBP19.97■□□□□ 0.79
CCDC88B-205ENST00000472524 KIF4BQ2VIQ3 1234 aa19.97■□□□□ 0.79
CCDC88B-205ENST00000472524 ASTN2O75129 1339 aaPredicted RBP19.97■□□□□ 0.79
CCDC88B-205ENST00000472524 WTIPA6NIX2 430 aaPredicted RBP19.96■□□□□ 0.79
CCDC88B-205ENST00000472524 CA12O43570 354 aa19.96■□□□□ 0.79
CCDC88B-205ENST00000472524 SLC4A10Q6U841 1118 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms