RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	IRF7	Q92985	503 aa		6.47	□□□□□ -1.37
PTCD3-209	ENST00000472044	COL25A1	Q9BXS0	654 aa	Predicted RBP	6.47	□□□□□ -1.37
PTCD3-209	ENST00000472044	KLF15	Q9UIH9	416 aa		6.47	□□□□□ -1.37
PTCD3-209	ENST00000472044	AK5	Q9Y6K8	562 aa		6.47	□□□□□ -1.37
PTCD3-209	ENST00000472044	ERBB4	Q15303	1308 aa		6.47	□□□□□ -1.37
PTCD3-209	ENST00000472044	ZBTB42	B2RXF5	422 aa		6.46	□□□□□ -1.38
PTCD3-209	ENST00000472044	ADH6	P28332	368 aa		6.46	□□□□□ -1.38
PTCD3-209	ENST00000472044	SRSF11	Q05519	484 aa	Known RBP	6.46	□□□□□ -1.38
PTCD3-209	ENST00000472044	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	6.46	□□□□□ -1.38
PTCD3-209	ENST00000472044	PEAR1	Q5VY43	1037 aa	Predicted RBP	6.46	□□□□□ -1.38
PTCD3-209	ENST00000472044	CEP120	Q8N960	986 aa		6.46	□□□□□ -1.38
PTCD3-209	ENST00000472044	EPS8L3	Q8TE67	593 aa	Known RBP	6.46	□□□□□ -1.38
PTCD3-209	ENST00000472044	SRCIN1	Q9C0H9	1055 aa		6.46	□□□□□ -1.38
PTCD3-209	ENST00000472044	NPHS2	Q9NP85	383 aa		6.46	□□□□□ -1.38
PTCD3-209	ENST00000472044	RNF19A	Q9NV58	838 aa		6.46	□□□□□ -1.38
PTCD3-209	ENST00000472044	NLRP2	Q9NX02	1062 aa		6.46	□□□□□ -1.38
PTCD3-209	ENST00000472044	KANSL3	Q9P2N6	904 aa		6.46	□□□□□ -1.38
PTCD3-209	ENST00000472044	SPG7	Q9UQ90	795 aa		6.46	□□□□□ -1.38
PTCD3-209	ENST00000472044	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	6.46	□□□□□ -1.38
PTCD3-209	ENST00000472044	IGF1R	P08069	1367 aa		6.45	□□□□□ -1.38
PTCD3-209	ENST00000472044	LOC102724428	A0A0B4J2F2	783 aa		6.45	□□□□□ -1.38
PTCD3-209	ENST00000472044	SORBS3	O60504	671 aa		6.45	□□□□□ -1.38
PTCD3-209	ENST00000472044	POLR3D	P05423	398 aa	Predicted RBP	6.45	□□□□□ -1.38
PTCD3-209	ENST00000472044	SIK1	P57059	783 aa		6.45	□□□□□ -1.38
PTCD3-209	ENST00000472044	PCBP4	P57723	403 aa	Known RBP	6.45	□□□□□ -1.38
PTCD3-209	ENST00000472044	PSMD2	Q13200	908 aa		6.45	□□□□□ -1.38
PTCD3-209	ENST00000472044	RNFT1	Q5M7Z0	435 aa		6.45	□□□□□ -1.38
PTCD3-209	ENST00000472044	COL13A1	Q5TAT6	717 aa	Predicted RBP	6.45	□□□□□ -1.38
PTCD3-209	ENST00000472044	DNAJB12	Q9NXW2	375 aa	Known RBP	6.45	□□□□□ -1.38
PTCD3-209	ENST00000472044	GDF2	Q9UK05	429 aa	Predicted RBP	6.45	□□□□□ -1.38
PTCD3-209	ENST00000472044		A0A1W2PP55	124 aa		6.44	□□□□□ -1.38
PTCD3-209	ENST00000472044	IRS1	P35568	1242 aa		6.44	□□□□□ -1.38
PTCD3-209	ENST00000472044	KRT76	Q01546	638 aa		6.44	□□□□□ -1.38
PTCD3-209	ENST00000472044	PI16	Q6UXB8	463 aa		6.44	□□□□□ -1.38
PTCD3-209	ENST00000472044	NCAPG2	Q86XI2	1143 aa		6.44	□□□□□ -1.38
PTCD3-209	ENST00000472044	SPACA7	Q96KW9	195 aa		6.44	□□□□□ -1.38
PTCD3-209	ENST00000472044	OSBPL7	Q9BZF2	842 aa		6.44	□□□□□ -1.38
PTCD3-209	ENST00000472044	SUV39H2	Q9H5I1	410 aa		6.44	□□□□□ -1.38
PTCD3-209	ENST00000472044	NFKBIE	O00221	500 aa		6.43	□□□□□ -1.38
PTCD3-209	ENST00000472044	SLCO4C1	Q6ZQN7	724 aa		6.43	□□□□□ -1.38
PTCD3-209	ENST00000472044	FCHSD1	Q86WN1	690 aa		6.43	□□□□□ -1.38
PTCD3-209	ENST00000472044	GOLGA6L1	Q8N7Z2	621 aa		6.43	□□□□□ -1.38
PTCD3-209	ENST00000472044	FAM161B	Q96MY7	647 aa		6.43	□□□□□ -1.38
PTCD3-209	ENST00000472044	BCO2	Q9BYV7	579 aa		6.43	□□□□□ -1.38
PTCD3-209	ENST00000472044	UBE2O	Q9C0C9	1292 aa	Known RBP	6.43	□□□□□ -1.38
PTCD3-209	ENST00000472044	C12orf49	Q9H741	205 aa		6.43	□□□□□ -1.38
PTCD3-209	ENST00000472044	MRS2	Q9HD23	443 aa		6.43	□□□□□ -1.38
PTCD3-209	ENST00000472044	IGSF5	Q9NSI5	407 aa		6.43	□□□□□ -1.38
PTCD3-209	ENST00000472044	DZANK1	Q9NVP4	752 aa		6.43	□□□□□ -1.38
PTCD3-209	ENST00000472044	ELOA3C	A0A087WX78	387 aa	Predicted RBP	6.42	□□□□□ -1.38
PTCD3-209	ENST00000472044	ELOA3D	A6NLF2	546 aa	Predicted RBP	6.42	□□□□□ -1.38
PTCD3-209	ENST00000472044	NEURL1B	A8MQ27	555 aa		6.42	□□□□□ -1.38
PTCD3-209	ENST00000472044	GADD45B	O75293	160 aa	Predicted RBP	6.42	□□□□□ -1.38
PTCD3-209	ENST00000472044	RECK	O95980	971 aa		6.42	□□□□□ -1.38
PTCD3-209	ENST00000472044	EIF4B	P23588	611 aa	Known RBP	6.42	□□□□□ -1.38
PTCD3-209	ENST00000472044	GRM2	Q14416	872 aa		6.42	□□□□□ -1.38
PTCD3-209	ENST00000472044	ELOA3B	Q3SY89	546 aa		6.42	□□□□□ -1.38
PTCD3-209	ENST00000472044	LDLRAD1	Q5T700	205 aa		6.42	□□□□□ -1.38
PTCD3-209	ENST00000472044	PRPF40B	Q6NWY9	871 aa	Known RBP	6.42	□□□□□ -1.38
PTCD3-209	ENST00000472044	GLIS3	Q8NEA6	775 aa		6.42	□□□□□ -1.38
PTCD3-209	ENST00000472044	ELOA3	Q8NG57	546 aa		6.42	□□□□□ -1.38
PTCD3-209	ENST00000472044	CNTNAP3B	Q96NU0	1288 aa		6.42	□□□□□ -1.38
PTCD3-209	ENST00000472044	NSUN5	Q96P11	429 aa	Known RBP	6.42	□□□□□ -1.38
PTCD3-209	ENST00000472044	OSMR	Q99650	979 aa		6.42	□□□□□ -1.38
PTCD3-209	ENST00000472044	ZKSCAN3	Q9BRR0	538 aa		6.42	□□□□□ -1.38
PTCD3-209	ENST00000472044	OXCT2	Q9BYC2	517 aa	Predicted RBP	6.42	□□□□□ -1.38
PTCD3-209	ENST00000472044	CNTNAP3	Q9BZ76	1288 aa		6.42	□□□□□ -1.38
PTCD3-209	ENST00000472044	LATS2	Q9NRM7	1088 aa		6.42	□□□□□ -1.38
PTCD3-209	ENST00000472044	LRRC4B	Q9NT99	713 aa		6.42	□□□□□ -1.38
PTCD3-209	ENST00000472044	FAM8A1	Q9UBU6	413 aa		6.42	□□□□□ -1.38
PTCD3-209	ENST00000472044	GGA1	Q9UJY5	639 aa		6.42	□□□□□ -1.38
PTCD3-209	ENST00000472044	SLC6A14	Q9UN76	642 aa		6.42	□□□□□ -1.38
PTCD3-209	ENST00000472044	TRAK1	Q9UPV9	953 aa		6.42	□□□□□ -1.38
PTCD3-209	ENST00000472044		J3QW42	95 aa		6.41	□□□□□ -1.38
PTCD3-209	ENST00000472044	GHRH	P01286	108 aa		6.41	□□□□□ -1.38
PTCD3-209	ENST00000472044	SLURP2	P0DP57	97 aa		6.41	□□□□□ -1.38
PTCD3-209	ENST00000472044	ADH7	P40394	386 aa		6.41	□□□□□ -1.38
PTCD3-209	ENST00000472044	NXPE4	Q6UWF7	544 aa		6.41	□□□□□ -1.38
PTCD3-209	ENST00000472044	CCNJL	Q8IV13	435 aa		6.41	□□□□□ -1.38
PTCD3-209	ENST00000472044	TMEM102	Q8N9M5	508 aa	Predicted RBP	6.41	□□□□□ -1.38
PTCD3-209	ENST00000472044	TTC9	Q92623	222 aa		6.41	□□□□□ -1.38
PTCD3-209	ENST00000472044	TCF12	Q99081	682 aa		6.41	□□□□□ -1.38
PTCD3-209	ENST00000472044	PBX4	Q9BYU1	374 aa		6.41	□□□□□ -1.38
PTCD3-209	ENST00000472044	BACH2	Q9BYV9	841 aa		6.41	□□□□□ -1.38
PTCD3-209	ENST00000472044	BHLHE41	Q9C0J9	482 aa	Predicted RBP	6.41	□□□□□ -1.38
PTCD3-209	ENST00000472044	RBSN	Q9H1K0	784 aa		6.41	□□□□□ -1.38
PTCD3-209	ENST00000472044	IGFLR1	Q9H665	355 aa		6.41	□□□□□ -1.38
PTCD3-209	ENST00000472044	PPP4R2	Q9NY27	417 aa		6.41	□□□□□ -1.38
PTCD3-209	ENST00000472044	FRRS1L	Q9P0K9	344 aa		6.41	□□□□□ -1.38
PTCD3-209	ENST00000472044	ADAMTS2	O95450	1211 aa		6.4	□□□□□ -1.38
PTCD3-209	ENST00000472044	CTSH	P09668	335 aa		6.4	□□□□□ -1.38
PTCD3-209	ENST00000472044	EPX	P11678	715 aa		6.4	□□□□□ -1.38
PTCD3-209	ENST00000472044	MLLT1	Q03111	559 aa	Predicted RBP	6.4	□□□□□ -1.38
PTCD3-209	ENST00000472044	LCE2C	Q5TA81	110 aa		6.4	□□□□□ -1.38
PTCD3-209	ENST00000472044	HFE2	Q6ZVN8	426 aa		6.4	□□□□□ -1.38
PTCD3-209	ENST00000472044	FAM35A	Q86V20	835 aa		6.4	□□□□□ -1.38
PTCD3-209	ENST00000472044	ANKRD24	Q8TF21	1146 aa		6.4	□□□□□ -1.38
PTCD3-209	ENST00000472044	NXPE3	Q969Y0	559 aa		6.4	□□□□□ -1.38
PTCD3-209	ENST00000472044	ACD	Q96AP0	544 aa		6.4	□□□□□ -1.38
PTCD3-209	ENST00000472044	CRELD1	Q96HD1	420 aa		6.4	□□□□□ -1.38

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