RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 HEG1Q9ULI3 1381 aa16.28■□□□□ 0.2
CCDC88A-211ENST00000471947 ZSCAN22P10073 491 aaPredicted RBP16.28■□□□□ 0.2
CCDC88A-211ENST00000471947 ISM2Q6H9L7 571 aa16.28■□□□□ 0.2
CCDC88A-211ENST00000471947 USP25Q9UHP3 1055 aa16.28■□□□□ 0.2
CCDC88A-211ENST00000471947 SYAP1Q96A49 352 aaPredicted RBP16.28■□□□□ 0.2
CCDC88A-211ENST00000471947 MICU3Q86XE3 530 aa16.27■□□□□ 0.2
CCDC88A-211ENST00000471947 FTOQ9C0B1 505 aaKnown RBP eCLIP16.27■□□□□ 0.23e-11■■■■■ 41.9
CCDC88A-211ENST00000471947 TNS3Q68CZ2 1445 aa16.27■□□□□ 0.2
CCDC88A-211ENST00000471947 ZRSR1Q15695 479 aaKnown RBP16.27■□□□□ 0.19
CCDC88A-211ENST00000471947 MST1RQ04912 1400 aa16.27■□□□□ 0.19
CCDC88A-211ENST00000471947 CYP21A2P08686 494 aa16.27■□□□□ 0.19
CCDC88A-211ENST00000471947 AIDAQ96BJ3 306 aa16.26■□□□□ 0.19
CCDC88A-211ENST00000471947 SALL3Q9BXA9 1300 aa16.26■□□□□ 0.19
CCDC88A-211ENST00000471947 TULP1O00294 542 aaPredicted RBP16.26■□□□□ 0.19
CCDC88A-211ENST00000471947 CCDC191Q8NCU4 936 aa16.26■□□□□ 0.19
CCDC88A-211ENST00000471947 SPATA32Q96LK8 384 aa16.26■□□□□ 0.19
CCDC88A-211ENST00000471947 ZNF219Q9P2Y4 722 aaPredicted RBP16.26■□□□□ 0.19
CCDC88A-211ENST00000471947 ERVV-2B6SEH9 535 aa16.26■□□□□ 0.19
CCDC88A-211ENST00000471947 RAD21O60216 631 aa16.26■□□□□ 0.19
CCDC88A-211ENST00000471947 ANAPC15P60006 121 aa16.26■□□□□ 0.19
CCDC88A-211ENST00000471947 PHKA1P46020 1223 aa16.25■□□□□ 0.19
CCDC88A-211ENST00000471947 COPRSQ9NQ92 184 aa16.25■□□□□ 0.19
CCDC88A-211ENST00000471947 WTIPA6NIX2 430 aaPredicted RBP16.25■□□□□ 0.19
CCDC88A-211ENST00000471947 ATP6V1DQ9Y5K8 247 aa16.25■□□□□ 0.19
CCDC88A-211ENST00000471947 CMTR1Q8N1G2 835 aaKnown RBP16.24■□□□□ 0.19
CCDC88A-211ENST00000471947 F13A1P00488 732 aa16.24■□□□□ 0.19
CCDC88A-211ENST00000471947 PRKCSHP14314 528 aaPredicted RBP16.24■□□□□ 0.19
CCDC88A-211ENST00000471947 TDO2P48775 406 aa16.24■□□□□ 0.19
CCDC88A-211ENST00000471947 CREBRFQ8IUR6 639 aa16.24■□□□□ 0.19
CCDC88A-211ENST00000471947 TSPY26PQ9H489 355 aa16.24■□□□□ 0.19
CCDC88A-211ENST00000471947 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.24■□□□□ 0.192e-7■■■□□ 14.7
CCDC88A-211ENST00000471947 ME1P48163 572 aa16.24■□□□□ 0.19
CCDC88A-211ENST00000471947 FOXO4P98177 505 aa16.24■□□□□ 0.19
CCDC88A-211ENST00000471947 PTF1AQ7RTS3 328 aa16.24■□□□□ 0.19
CCDC88A-211ENST00000471947 KBTBD3Q8NAB2 608 aa16.24■□□□□ 0.19
CCDC88A-211ENST00000471947 DENND2AQ9ULE3 1009 aa16.24■□□□□ 0.19
CCDC88A-211ENST00000471947 GOLGA8BA8MQT2 603 aa16.23■□□□□ 0.19
CCDC88A-211ENST00000471947 PRDM1O75626 825 aa16.23■□□□□ 0.19
CCDC88A-211ENST00000471947 BRD1O95696 1058 aa16.23■□□□□ 0.19
CCDC88A-211ENST00000471947 OSBP2Q969R2 916 aa16.23■□□□□ 0.19
CCDC88A-211ENST00000471947 hCG_1642624A0A1W2PR95 340 aa16.23■□□□□ 0.19
CCDC88A-211ENST00000471947 ATP5JP18859 108 aa16.23■□□□□ 0.19
CCDC88A-211ENST00000471947 PTMSP20962 102 aa16.23■□□□□ 0.19
CCDC88A-211ENST00000471947 KNDC1Q76NI1 1749 aa16.22■□□□□ 0.19
CCDC88A-211ENST00000471947 BCAMP50895 628 aa16.22■□□□□ 0.19
CCDC88A-211ENST00000471947 KRT85P78386 507 aa16.22■□□□□ 0.19
CCDC88A-211ENST00000471947 TFCP2L1Q9NZI6 479 aa16.22■□□□□ 0.19
CCDC88A-211ENST00000471947 KLF18A0A0U1RQI7 1052 aa16.22■□□□□ 0.19
CCDC88A-211ENST00000471947 ESPNB1AK53 854 aa16.22■□□□□ 0.19
CCDC88A-211ENST00000471947 ZNF213O14771 459 aa16.22■□□□□ 0.19
CCDC88A-211ENST00000471947 IGHMBP2P38935 993 aaKnown RBP16.22■□□□□ 0.19
CCDC88A-211ENST00000471947 MAGEB6Q8N7X4 407 aa16.22■□□□□ 0.19
CCDC88A-211ENST00000471947 PUS7LQ9H0K6 701 aaKnown RBP16.22■□□□□ 0.19
CCDC88A-211ENST00000471947 M0R2C6 588 aa16.22■□□□□ 0.19
CCDC88A-211ENST00000471947 RPS6KB1P23443 525 aa16.22■□□□□ 0.19
CCDC88A-211ENST00000471947 MAP4K1Q92918 833 aa16.22■□□□□ 0.19
CCDC88A-211ENST00000471947 H7C1W4 665 aa16.21■□□□□ 0.19
CCDC88A-211ENST00000471947 MTX1Q13505 466 aa16.21■□□□□ 0.19
CCDC88A-211ENST00000471947 IMMTQ16891 758 aaKnown RBP16.21■□□□□ 0.19
CCDC88A-211ENST00000471947 ATG9AQ7Z3C6 839 aa16.21■□□□□ 0.19
CCDC88A-211ENST00000471947 AKAP12Q02952 1782 aa16.21■□□□□ 0.19
CCDC88A-211ENST00000471947 RNF113AO15541 343 aaKnown RBP16.21■□□□□ 0.19
CCDC88A-211ENST00000471947 MBD3O95983 291 aa16.21■□□□□ 0.19
CCDC88A-211ENST00000471947 CRKLP46109 303 aaKnown RBP16.21■□□□□ 0.19
CCDC88A-211ENST00000471947 ARMT1Q9H993 441 aa16.21■□□□□ 0.19
CCDC88A-211ENST00000471947 SRP68Q9UHB9 627 aaKnown RBP16.21■□□□□ 0.19
CCDC88A-211ENST00000471947 AKAP2Q9Y2D5 859 aa16.21■□□□□ 0.19
CCDC88A-211ENST00000471947 U3KPZ7 1027 aaPredicted RBP16.21■□□□□ 0.19
CCDC88A-211ENST00000471947 NECTIN1Q15223 517 aa16.21■□□□□ 0.19
CCDC88A-211ENST00000471947 NLRP10Q86W26 655 aa16.21■□□□□ 0.19
CCDC88A-211ENST00000471947 B4E1Z4 1266 aa16.2■□□□□ 0.18
CCDC88A-211ENST00000471947 BIN1O00499 593 aa16.2■□□□□ 0.18
CCDC88A-211ENST00000471947 LOC102724428A0A0B4J2F2 783 aa16.2■□□□□ 0.18
CCDC88A-211ENST00000471947 GPAA1O43292 621 aa16.2■□□□□ 0.18
CCDC88A-211ENST00000471947 HSPD1P10809 573 aaKnown RBP16.2■□□□□ 0.18
CCDC88A-211ENST00000471947 GYG1P46976 350 aa16.2■□□□□ 0.18
CCDC88A-211ENST00000471947 RFX5P48382 616 aaPredicted RBP16.2■□□□□ 0.18
CCDC88A-211ENST00000471947 SIK1P57059 783 aa16.2■□□□□ 0.18
CCDC88A-211ENST00000471947 CTDSPL2Q05D32 466 aa16.2■□□□□ 0.18
CCDC88A-211ENST00000471947 C17orf53Q8N3J3 647 aaPredicted RBP16.2■□□□□ 0.18
CCDC88A-211ENST00000471947 GNPATO15228 680 aa16.2■□□□□ 0.18
CCDC88A-211ENST00000471947 ZSCAN31Q96LW9 406 aaPredicted RBP16.2■□□□□ 0.18
CCDC88A-211ENST00000471947 SLC4A9Q96Q91 983 aa16.2■□□□□ 0.18
CCDC88A-211ENST00000471947 SUSD4Q5VX71 490 aa16.19■□□□□ 0.18
CCDC88A-211ENST00000471947 NAPBQ9H115 298 aa16.19■□□□□ 0.18
CCDC88A-211ENST00000471947 SDF4Q9BRK5 362 aa16.19■□□□□ 0.18
CCDC88A-211ENST00000471947 DACT1Q9NYF0 836 aa16.19■□□□□ 0.18
CCDC88A-211ENST00000471947 GIGYF2Q6Y7W6 1299 aaKnown RBP16.19■□□□□ 0.18
CCDC88A-211ENST00000471947 GPR101Q96P66 508 aaPredicted RBP16.19■□□□□ 0.18
CCDC88A-211ENST00000471947 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.19■□□□□ 0.187e-8■□□□□ 8.3
CCDC88A-211ENST00000471947 HSP90AA4PQ58FG1 418 aa16.18■□□□□ 0.18
CCDC88A-211ENST00000471947 HAUS7Q99871 368 aa16.18■□□□□ 0.18
CCDC88A-211ENST00000471947 ZSWIM6Q9HCJ5 1215 aa16.18■□□□□ 0.18
CCDC88A-211ENST00000471947 R3HCC1Q9Y3T6 440 aaKnown RBP16.18■□□□□ 0.18
CCDC88A-211ENST00000471947 RGPD2P0DJD1 1756 aa16.18■□□□□ 0.18
CCDC88A-211ENST00000471947 SRCAPQ6ZRS2 3230 aa16.18■□□□□ 0.18
CCDC88A-211ENST00000471947 PRC1O43663 620 aa16.18■□□□□ 0.18
CCDC88A-211ENST00000471947 PRKAB2O43741 272 aa16.18■□□□□ 0.18
CCDC88A-211ENST00000471947 SAMD1Q6SPF0 538 aaPredicted RBP16.18■□□□□ 0.18
CCDC88A-211ENST00000471947 PHKBQ93100 1093 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms