RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 EVA1CP58658 441 aa6.25□□□□□ -1.41
SF3B1-208ENST00000470268 SCARF1Q14162 830 aa6.25□□□□□ -1.41
SF3B1-208ENST00000470268 TOM1L2Q6ZVM7 507 aa6.25□□□□□ -1.41
SF3B1-208ENST00000470268 ARMC2Q8NEN0 867 aa6.25□□□□□ -1.41
SF3B1-208ENST00000470268 UNC93B1Q9H1C4 597 aa6.25□□□□□ -1.41
SF3B1-208ENST00000470268 ALG2Q9H553 416 aa6.25□□□□□ -1.41
SF3B1-208ENST00000470268 USP35Q9P2H5 1018 aa6.25□□□□□ -1.41
SF3B1-208ENST00000470268 PLCH1Q4KWH8 1693 aa6.24□□□□□ -1.41
SF3B1-208ENST00000470268 FAM208AQ9UK61 1670 aaKnown RBP6.24□□□□□ -1.41
SF3B1-208ENST00000470268 NR1H3Q13133 447 aa6.24□□□□□ -1.41
SF3B1-208ENST00000470268 UNC5CLQ8IV45 518 aa6.24□□□□□ -1.41
SF3B1-208ENST00000470268 TCP11L2Q8N4U5 519 aa6.24□□□□□ -1.41
SF3B1-208ENST00000470268 GPKOWQ92917 476 aaPredicted RBP eCLIP6.24□□□□□ -1.41
SF3B1-208ENST00000470268 RUNDC1Q96C34 613 aa6.24□□□□□ -1.41
SF3B1-208ENST00000470268 CARD10Q9BWT7 1032 aa6.24□□□□□ -1.41
SF3B1-208ENST00000470268 GPSM3Q9Y4H4 160 aa6.24□□□□□ -1.41
SF3B1-208ENST00000470268 MEGF6O75095 1541 aa6.24□□□□□ -1.41
SF3B1-208ENST00000470268 RGPD2P0DJD1 1756 aa6.24□□□□□ -1.41
SF3B1-208ENST00000470268 CRB1P82279 1406 aa6.24□□□□□ -1.41
SF3B1-208ENST00000470268 NRAPQ86VF7 1730 aa6.24□□□□□ -1.41
SF3B1-208ENST00000470268 AFF2P51816 1311 aa6.23□□□□□ -1.41
SF3B1-208ENST00000470268 CTHP32929 405 aa6.23□□□□□ -1.41
SF3B1-208ENST00000470268 HNRNPUQ00839 825 aaKnown RBP eCLIP6.23□□□□□ -1.41
SF3B1-208ENST00000470268 MEX3CQ5U5Q3 659 aaKnown RBP6.23□□□□□ -1.41
SF3B1-208ENST00000470268 ZFP42Q96MM3 310 aa6.23□□□□□ -1.41
SF3B1-208ENST00000470268 USP21Q9UK80 565 aa6.23□□□□□ -1.41
SF3B1-208ENST00000470268 RRP7AQ9Y3A4 280 aaKnown RBP6.23□□□□□ -1.41
SF3B1-208ENST00000470268 SPATA31A1Q5TZJ5 1347 aa6.23□□□□□ -1.41
SF3B1-208ENST00000470268 ZBBXA8MT70 800 aa6.23□□□□□ -1.41
SF3B1-208ENST00000470268 LORP23490 312 aaPredicted RBP6.23□□□□□ -1.41
SF3B1-208ENST00000470268 MTHFSDQ2M296 383 aaKnown RBP6.23□□□□□ -1.41
SF3B1-208ENST00000470268 BAP1Q92560 729 aa6.23□□□□□ -1.41
SF3B1-208ENST00000470268 SPATA31A5Q5VU36 1347 aa6.22□□□□□ -1.41
SF3B1-208ENST00000470268 SPATA31A7Q8IWB4 1347 aa6.22□□□□□ -1.41
SF3B1-208ENST00000470268 FBXO45P0C2W1 286 aa6.22□□□□□ -1.41
SF3B1-208ENST00000470268 TMPOP42166 694 aaKnown RBP6.22□□□□□ -1.41
SF3B1-208ENST00000470268 NNTQ13423 1086 aa6.22□□□□□ -1.41
SF3B1-208ENST00000470268 VPS72Q15906 364 aa6.22□□□□□ -1.41
SF3B1-208ENST00000470268 MRPL14Q6P1L8 145 aaKnown RBP6.22□□□□□ -1.41
SF3B1-208ENST00000470268 PDXDC2PQ6P474 469 aa6.22□□□□□ -1.41
SF3B1-208ENST00000470268 ZNF511Q8NB15 262 aa6.22□□□□□ -1.41
SF3B1-208ENST00000470268 NBPF14Q5TI25 921 aa6.21□□□□□ -1.41
SF3B1-208ENST00000470268 FAM174AQ8TBP5 190 aa6.21□□□□□ -1.41
SF3B1-208ENST00000470268 RGS17Q9UGC6 210 aaPredicted RBP6.21□□□□□ -1.41
SF3B1-208ENST00000470268 DISP2A7MBM2 1401 aa6.21□□□□□ -1.41
SF3B1-208ENST00000470268 NWD2Q9ULI1 1742 aa6.21□□□□□ -1.41
SF3B1-208ENST00000470268 MAPK8IP3Q9UPT6 1336 aa6.21□□□□□ -1.42
SF3B1-208ENST00000470268 OVOS2A0A0G2JMS6 1433 aa6.21□□□□□ -1.42
SF3B1-208ENST00000470268 ADH1CP00326 375 aa6.21□□□□□ -1.42
SF3B1-208ENST00000470268 IL2RBP14784 551 aa6.21□□□□□ -1.42
SF3B1-208ENST00000470268 SEMA3FQ13275 785 aa6.21□□□□□ -1.42
SF3B1-208ENST00000470268 NFE2L2Q16236 605 aa6.21□□□□□ -1.42
SF3B1-208ENST00000470268 RAPGEF4Q8WZA2 1011 aa6.21□□□□□ -1.42
SF3B1-208ENST00000470268 CCDC9Q9Y3X0 531 aaKnown RBP6.21□□□□□ -1.42
SF3B1-208ENST00000470268 ZNF521Q96K83 1311 aa6.2□□□□□ -1.42
SF3B1-208ENST00000470268 ATRNO75882 1429 aa6.2□□□□□ -1.42
SF3B1-208ENST00000470268 CYP27B1O15528 508 aa6.2□□□□□ -1.42
SF3B1-208ENST00000470268 VSIG8P0DPA2 414 aa6.2□□□□□ -1.42
SF3B1-208ENST00000470268 TATP17735 454 aaPredicted RBP6.2□□□□□ -1.42
SF3B1-208ENST00000470268 RIPK4P57078 832 aa6.2□□□□□ -1.42
SF3B1-208ENST00000470268 DCTN1Q14203 1278 aa6.2□□□□□ -1.42
SF3B1-208ENST00000470268 LINC01559Q495D7 138 aa6.2□□□□□ -1.42
SF3B1-208ENST00000470268 ZNF592Q92610 1267 aa6.2□□□□□ -1.42
SF3B1-208ENST00000470268 THUMPD2Q9BTF0 503 aaKnown RBP6.2□□□□□ -1.42
SF3B1-208ENST00000470268 PNNQ9H307 717 aaKnown RBP6.2□□□□□ -1.42
SF3B1-208ENST00000470268 GLI3P10071 1580 aa6.2□□□□□ -1.42
SF3B1-208ENST00000470268 PTK2Q05397 1052 aa6.2□□□□□ -1.42
SF3B1-208ENST00000470268 QTRT2Q9H974 415 aaKnown RBP6.2□□□□□ -1.42
SF3B1-208ENST00000470268 TRPC5Q9UL62 973 aaPredicted RBP6.2□□□□□ -1.42
SF3B1-208ENST00000470268 THRAP3Q9Y2W1 955 aaKnown RBP6.2□□□□□ -1.42
SF3B1-208ENST00000470268 TLL2Q9Y6L7 1015 aa6.2□□□□□ -1.42
SF3B1-208ENST00000470268 ERBB4Q15303 1308 aa6.19□□□□□ -1.42
SF3B1-208ENST00000470268 ZBED9Q6R2W3 1325 aa6.19□□□□□ -1.42
SF3B1-208ENST00000470268 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.19□□□□□ -1.42
SF3B1-208ENST00000470268 TIMP2P16035 220 aa6.19□□□□□ -1.42
SF3B1-208ENST00000470268 VEGFBP49765 207 aa6.19□□□□□ -1.42
SF3B1-208ENST00000470268 WDR4P57081 412 aaKnown RBP6.19□□□□□ -1.42
SF3B1-208ENST00000470268 AMOTQ4VCS5 1084 aa6.19□□□□□ -1.42
SF3B1-208ENST00000470268 PLEKHO1Q53GL0 409 aaPredicted RBP6.19□□□□□ -1.42
SF3B1-208ENST00000470268 ZNF530Q6P9A1 599 aaPredicted RBP6.19□□□□□ -1.42
SF3B1-208ENST00000470268 MCM10Q7L590 875 aa6.19□□□□□ -1.42
SF3B1-208ENST00000470268 IL17REQ8NFR9 667 aa6.19□□□□□ -1.42
SF3B1-208ENST00000470268 GAS2L2Q8NHY3 880 aa6.19□□□□□ -1.42
SF3B1-208ENST00000470268 PPP1R12CQ9BZL4 782 aa6.19□□□□□ -1.42
SF3B1-208ENST00000470268 NEFMP07197 916 aa6.18□□□□□ -1.42
SF3B1-208ENST00000470268 PHKG2P15735 406 aa6.18□□□□□ -1.42
SF3B1-208ENST00000470268 MCCD1P59942 119 aaPredicted RBP6.18□□□□□ -1.42
SF3B1-208ENST00000470268 CCDC27Q2M243 656 aa6.18□□□□□ -1.42
SF3B1-208ENST00000470268 POTEAQ6S8J7 498 aa6.18□□□□□ -1.42
SF3B1-208ENST00000470268 ZCRB1Q8TBF4 217 aaKnown RBP6.18□□□□□ -1.42
SF3B1-208ENST00000470268 CDK15Q96Q40 435 aa6.18□□□□□ -1.42
SF3B1-208ENST00000470268 UCN2Q96RP3 112 aa6.18□□□□□ -1.42
SF3B1-208ENST00000470268 LGR6Q9HBX8 967 aa6.18□□□□□ -1.42
SF3B1-208ENST00000470268 MAP3K5Q99683 1374 aa6.18□□□□□ -1.42
SF3B1-208ENST00000470268 PLEKHG2Q9H7P9 1386 aa6.18□□□□□ -1.42
SF3B1-208ENST00000470268 AKAP4Q5JQC9 854 aa6.18□□□□□ -1.42
SF3B1-208ENST00000470268 MPRIPQ6WCQ1 1025 aa6.18□□□□□ -1.42
SF3B1-208ENST00000470268 DDX54Q8TDD1 881 aaKnown RBP6.18□□□□□ -1.42
SF3B1-208ENST00000470268 OCSTAMPQ9BR26 566 aa6.18□□□□□ -1.42
SF3B1-208ENST00000470268 SPG7Q9UQ90 795 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms