RNA–Protein interactions for RNA: ENST00000469670.1

TTC28-205, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-205ENST00000469670 ASTN2O75129 1339 aaPredicted RBP23.87■■□□□ 1.41
TTC28-205ENST00000469670 VIL1P09327 827 aaKnown RBP23.87■■□□□ 1.41
TTC28-205ENST00000469670 PLBD2Q8NHP8 589 aa23.87■■□□□ 1.41
TTC28-205ENST00000469670 ISCA1Q9BUE6 129 aa23.87■■□□□ 1.41
TTC28-205ENST00000469670 CHPF2Q9P2E5 772 aa23.87■■□□□ 1.41
TTC28-205ENST00000469670 LMOD3Q0VAK6 560 aa23.86■■□□□ 1.41
TTC28-205ENST00000469670 KRT24Q2M2I5 525 aa23.86■■□□□ 1.41
TTC28-205ENST00000469670 REM2Q8IYK8 340 aaPredicted RBP23.86■■□□□ 1.41
TTC28-205ENST00000469670 ZC3H12CQ9C0D7 883 aaKnown RBP23.86■■□□□ 1.41
TTC28-205ENST00000469670 ATP5J2-PTCD1G3V325 749 aa23.85■■□□□ 1.41
TTC28-205ENST00000469670 ANKRD13DQ6ZTN6 518 aa23.85■■□□□ 1.41
TTC28-205ENST00000469670 RASAL3Q86YV0 1011 aa23.85■■□□□ 1.41
TTC28-205ENST00000469670 DDX60Q8IY21 1712 aaKnown RBP23.84■■□□□ 1.41
TTC28-205ENST00000469670 COL4A1P02462 1669 aa23.84■■□□□ 1.41
TTC28-205ENST00000469670 TMPOP42166 694 aaKnown RBP23.84■■□□□ 1.41
TTC28-205ENST00000469670 RPS8P62241 208 aaKnown RBP23.84■■□□□ 1.41
TTC28-205ENST00000469670 RTL5Q5HYW3 569 aaPredicted RBP23.84■■□□□ 1.41
TTC28-205ENST00000469670 PRPF38BQ5VTL8 546 aaKnown RBP23.84■■□□□ 1.41
TTC28-205ENST00000469670 G3V3G9 751 aa23.83■■□□□ 1.41
TTC28-205ENST00000469670 DCAF8Q5TAQ9 597 aa23.83■■□□□ 1.41
TTC28-205ENST00000469670 ANGEL2Q5VTE6 544 aaKnown RBP23.83■■□□□ 1.41
TTC28-205ENST00000469670 POLR2AP24928 1970 aaKnown RBP23.82■■□□□ 1.4
TTC28-205ENST00000469670 IRS4O14654 1257 aaPredicted RBP23.82■■□□□ 1.4
TTC28-205ENST00000469670 ZNF280AP59817 542 aaPredicted RBP23.82■■□□□ 1.4
TTC28-205ENST00000469670 SCARF1Q14162 830 aa23.82■■□□□ 1.4
TTC28-205ENST00000469670 HDGFL1Q5TGJ6 251 aa23.82■■□□□ 1.4
TTC28-205ENST00000469670 PODXL2Q9NZ53 605 aa23.82■■□□□ 1.4
TTC28-205ENST00000469670 HPS5Q9UPZ3 1129 aa23.82■■□□□ 1.4
TTC28-205ENST00000469670 CHL1O00533 1208 aa23.81■■□□□ 1.4
TTC28-205ENST00000469670 UFL1O94874 794 aa23.81■■□□□ 1.4
TTC28-205ENST00000469670 FKBP1BP68106 108 aa23.81■■□□□ 1.4
TTC28-205ENST00000469670 RSBN1LQ6PCB5 846 aaPredicted RBP23.8■■□□□ 1.4
TTC28-205ENST00000469670 AGBL3Q8NEM8 1001 aa23.8■■□□□ 1.4
TTC28-205ENST00000469670 AKAP11Q9UKA4 1901 aa23.79■■□□□ 1.4
TTC28-205ENST00000469670 ANKIB1Q9P2G1 1089 aa23.79■■□□□ 1.4
TTC28-205ENST00000469670 DBF4Q9UBU7 674 aaPredicted RBP23.79■■□□□ 1.4
TTC28-205ENST00000469670 GGA1Q9UJY5 639 aa23.79■■□□□ 1.4
TTC28-205ENST00000469670 LAS1LQ9Y4W2 734 aaKnown RBP23.79■■□□□ 1.4
TTC28-205ENST00000469670 ZNF609O15014 1411 aa23.78■■□□□ 1.4
TTC28-205ENST00000469670 TRIM28Q13263 835 aaKnown RBP23.78■■□□□ 1.4
TTC28-205ENST00000469670 PKN2Q16513 984 aaKnown RBP23.78■■□□□ 1.4
TTC28-205ENST00000469670 SEC31BQ9NQW1 1179 aa23.78■■□□□ 1.4
TTC28-205ENST00000469670 HDAC9Q9UKV0 1011 aa23.78■■□□□ 1.4
TTC28-205ENST00000469670 HOXB7P09629 217 aa23.77■■□□□ 1.4
TTC28-205ENST00000469670 NEUROD2Q15784 382 aa23.77■■□□□ 1.4
TTC28-205ENST00000469670 SCN9AQ15858 1988 aa23.77■■□□□ 1.4
TTC28-205ENST00000469670 MOB2Q70IA6 237 aa23.76■■□□□ 1.39
TTC28-205ENST00000469670 ZNF296Q8WUU4 475 aaPredicted RBP23.76■■□□□ 1.39
TTC28-205ENST00000469670 MYOZ2Q9NPC6 264 aa23.76■■□□□ 1.39
TTC28-205ENST00000469670 HYPKQ9NX55 129 aa23.76■■□□□ 1.39
TTC28-205ENST00000469670 PITPNM2Q9BZ72 1349 aa23.76■■□□□ 1.39
TTC28-205ENST00000469670 PAPPA2Q9BXP8 1791 aa23.75■■□□□ 1.39
TTC28-205ENST00000469670 TBC1D8O95759 1140 aa23.75■■□□□ 1.39
TTC28-205ENST00000469670 USP17L8P0C7I0 530 aa23.75■■□□□ 1.39
TTC28-205ENST00000469670 ZBTB38Q8NAP3 1195 aaPredicted RBP23.75■■□□□ 1.39
TTC28-205ENST00000469670 GMLQ99445 158 aa23.75■■□□□ 1.39
TTC28-205ENST00000469670 UBE2Q2LH0YL09 131 aa23.74■■□□□ 1.39
TTC28-205ENST00000469670 SCAF8Q9UPN6 1271 aaKnown RBP23.74■■□□□ 1.39
TTC28-205ENST00000469670 HSP90B1P14625 803 aaKnown RBP23.73■■□□□ 1.39
TTC28-205ENST00000469670 CCDC152Q4G0S7 254 aa23.72■■□□□ 1.39
TTC28-205ENST00000469670 CCDC146Q8IYE0 955 aa23.72■■□□□ 1.39
TTC28-205ENST00000469670 TRIM35Q9UPQ4 493 aa23.72■■□□□ 1.39
TTC28-205ENST00000469670 USP17L3A6NCW0 530 aa23.71■■□□□ 1.39
TTC28-205ENST00000469670 USP17L4A6NCW7 530 aa23.71■■□□□ 1.39
TTC28-205ENST00000469670 PRAMEF18Q5VWM3 479 aa23.71■■□□□ 1.39
TTC28-205ENST00000469670 USP17L1Q7RTZ2 530 aa23.71■■□□□ 1.39
TTC28-205ENST00000469670 RIC3Q7Z5B4 369 aa23.71■■□□□ 1.39
TTC28-205ENST00000469670 XDHP47989 1333 aa23.7■■□□□ 1.38
TTC28-205ENST00000469670 GPR25O00155 361 aa23.7■■□□□ 1.38
TTC28-205ENST00000469670 TM4SF4P48230 202 aa23.7■■□□□ 1.38
TTC28-205ENST00000469670 TTLL12Q14166 644 aaPredicted RBP23.7■■□□□ 1.38
TTC28-205ENST00000469670 DUSP27Q5VZP5 1158 aa23.7■■□□□ 1.38
TTC28-205ENST00000469670 PODNQ7Z5L7 613 aa23.7■■□□□ 1.38
TTC28-205ENST00000469670 GOLGA2Q08379 1002 aa23.69■■□□□ 1.38
TTC28-205ENST00000469670 NOM1Q5C9Z4 860 aaKnown RBP23.69■■□□□ 1.38
TTC28-205ENST00000469670 FBXO46Q6PJ61 603 aaPredicted RBP23.69■■□□□ 1.38
TTC28-205ENST00000469670 CCDC85AQ96PX6 553 aaPredicted RBP23.69■■□□□ 1.38
TTC28-205ENST00000469670 PDE8AO60658 829 aa23.68■■□□□ 1.38
TTC28-205ENST00000469670 ATP2B4P23634 1241 aa23.68■■□□□ 1.38
TTC28-205ENST00000469670 NBPF9Q3BBW0 867 aa23.68■■□□□ 1.38
TTC28-205ENST00000469670 ANKRD18AQ8IVF6 992 aa23.68■■□□□ 1.38
TTC28-205ENST00000469670 PCCAP05165 728 aaPredicted RBP23.67■■□□□ 1.38
TTC28-205ENST00000469670 MKRN3Q13064 507 aaKnown RBP23.67■■□□□ 1.38
TTC28-205ENST00000469670 MYD88Q99836 296 aa23.67■■□□□ 1.38
TTC28-205ENST00000469670 NF2P35240 595 aa23.66■■□□□ 1.38
TTC28-205ENST00000469670 CCDC191Q8NCU4 936 aa23.66■■□□□ 1.38
TTC28-205ENST00000469670 JARID2Q92833 1246 aaPredicted RBP23.66■■□□□ 1.38
TTC28-205ENST00000469670 PHAXQ9H814 394 aaKnown RBP23.66■■□□□ 1.38
TTC28-205ENST00000469670 SREBF2Q12772 1141 aa23.65■■□□□ 1.38
TTC28-205ENST00000469670 RALBP1Q15311 655 aa23.65■■□□□ 1.38
TTC28-205ENST00000469670 RUNDC1Q96C34 613 aa23.65■■□□□ 1.38
TTC28-205ENST00000469670 FKTNO75072 461 aa23.64■■□□□ 1.37
TTC28-205ENST00000469670 OGFOD1Q8N543 542 aa23.64■■□□□ 1.37
TTC28-205ENST00000469670 MXD3Q9BW11 206 aa23.64■■□□□ 1.37
TTC28-205ENST00000469670 CWC25Q9NXE8 425 aaPredicted RBP23.64■■□□□ 1.37
TTC28-205ENST00000469670 PSME4Q14997 1843 aa23.63■■□□□ 1.37
TTC28-205ENST00000469670 WTIPA6NIX2 430 aaPredicted RBP23.63■■□□□ 1.37
TTC28-205ENST00000469670 WNT10BO00744 389 aa23.63■■□□□ 1.37
TTC28-205ENST00000469670 DACT2Q5SW24 774 aa23.63■■□□□ 1.37
TTC28-205ENST00000469670 CFHR5Q9BXR6 569 aa23.63■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms