RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 ECE2O60344 883 aa21.25■□□□□ 0.99
CCDC28B-204ENST00000469003 LBX1P52954 281 aa21.25■□□□□ 0.99
CCDC28B-204ENST00000469003 ZC3H15Q8WU90 426 aaKnown RBP21.25■□□□□ 0.99
CCDC28B-204ENST00000469003 DPF2Q92785 391 aa21.25■□□□□ 0.99
CCDC28B-204ENST00000469003 CCDC85AQ96PX6 553 aaPredicted RBP21.25■□□□□ 0.99
CCDC28B-204ENST00000469003 H7C1D1 291 aa21.24■□□□□ 0.99
CCDC28B-204ENST00000469003 TRAF5O00463 557 aa21.24■□□□□ 0.99
CCDC28B-204ENST00000469003 SLC34A2O95436 690 aa21.24■□□□□ 0.99
CCDC28B-204ENST00000469003 CTSWP56202 376 aa21.24■□□□□ 0.99
CCDC28B-204ENST00000469003 DOK7Q18PE1 504 aa21.24■□□□□ 0.99
CCDC28B-204ENST00000469003 ANKRD18AQ8IVF6 992 aa21.24■□□□□ 0.99
CCDC28B-204ENST00000469003 MICALL2Q8IY33 904 aa21.24■□□□□ 0.99
CCDC28B-204ENST00000469003 GPR101Q96P66 508 aaPredicted RBP21.24■□□□□ 0.99
CCDC28B-204ENST00000469003 ZC3H12CQ9C0D7 883 aaKnown RBP21.24■□□□□ 0.99
CCDC28B-204ENST00000469003 ANKIB1Q9P2G1 1089 aa21.24■□□□□ 0.99
CCDC28B-204ENST00000469003 GGA1Q9UJY5 639 aa21.24■□□□□ 0.99
CCDC28B-204ENST00000469003 ZBTB12Q9Y330 459 aaPredicted RBP21.24■□□□□ 0.99
CCDC28B-204ENST00000469003 NEURL1BA8MQ27 555 aa21.23■□□□□ 0.99
CCDC28B-204ENST00000469003 UFL1O94874 794 aa21.23■□□□□ 0.99
CCDC28B-204ENST00000469003 HIRAP54198 1017 aaPredicted RBP21.23■□□□□ 0.99
CCDC28B-204ENST00000469003 CWF19L2Q2TBE0 894 aaKnown RBP21.23■□□□□ 0.99
CCDC28B-204ENST00000469003 CST9Q5W186 159 aa21.23■□□□□ 0.99
CCDC28B-204ENST00000469003 TRPM4Q8TD43 1214 aa21.23■□□□□ 0.99
CCDC28B-204ENST00000469003 SALL2Q9Y467 1007 aaPredicted RBP21.23■□□□□ 0.99
CCDC28B-204ENST00000469003 SHTN1A0MZ66 631 aa21.22■□□□□ 0.99
CCDC28B-204ENST00000469003 RPS12P25398 132 aaKnown RBP21.22■□□□□ 0.99
CCDC28B-204ENST00000469003 FLIIQ13045 1269 aa21.22■□□□□ 0.99
CCDC28B-204ENST00000469003 TTLL11Q8NHH1 800 aa21.22■□□□□ 0.99
CCDC28B-204ENST00000469003 CDC5LQ99459 802 aaKnown RBP21.22■□□□□ 0.99
CCDC28B-204ENST00000469003 WBP1LQ9NX94 342 aa21.22■□□□□ 0.99
CCDC28B-204ENST00000469003 WDR33Q9C0J8 1336 aaKnown RBP21.22■□□□□ 0.99
CCDC28B-204ENST00000469003 RTL9Q8NET4 1388 aa21.22■□□□□ 0.99
CCDC28B-204ENST00000469003 VAMP4O75379 141 aa21.21■□□□□ 0.99
CCDC28B-204ENST00000469003 GLIS2Q9BZE0 524 aaPredicted RBP21.21■□□□□ 0.99
CCDC28B-204ENST00000469003 KCNQ5Q9NR82 932 aa21.21■□□□□ 0.99
CCDC28B-204ENST00000469003 XDHP47989 1333 aa21.21■□□□□ 0.99
CCDC28B-204ENST00000469003 SCN9AQ15858 1988 aa21.21■□□□□ 0.99
CCDC28B-204ENST00000469003 H7C1W4 665 aa21.2■□□□□ 0.98
CCDC28B-204ENST00000469003 TLL2Q9Y6L7 1015 aa21.2■□□□□ 0.98
CCDC28B-204ENST00000469003 G3V3G9 751 aa21.19■□□□□ 0.98
CCDC28B-204ENST00000469003 ATP2B4P23634 1241 aa21.19■□□□□ 0.98
CCDC28B-204ENST00000469003 EXOSC9Q06265 439 aaKnown RBP21.19■□□□□ 0.98
CCDC28B-204ENST00000469003 FKBP5Q13451 457 aaPredicted RBP21.19■□□□□ 0.98
CCDC28B-204ENST00000469003 GCKRQ14397 625 aa21.19■□□□□ 0.98
CCDC28B-204ENST00000469003 FAM161AQ3B820 660 aa21.19■□□□□ 0.98
CCDC28B-204ENST00000469003 DCAF8Q5TAQ9 597 aa21.19■□□□□ 0.98
CCDC28B-204ENST00000469003 CDC37L1Q7L3B6 337 aa21.19■□□□□ 0.98
CCDC28B-204ENST00000469003 UBE3BQ7Z3V4 1068 aa21.19■□□□□ 0.98
CCDC28B-204ENST00000469003 DNAAF4Q8WXU2 420 aa21.19■□□□□ 0.98
CCDC28B-204ENST00000469003 ABHD8Q96I13 439 aa21.19■□□□□ 0.98
CCDC28B-204ENST00000469003 GREM2Q9H772 168 aa21.19■□□□□ 0.98
CCDC28B-204ENST00000469003 SPEF2Q9C093 1822 aa21.19■□□□□ 0.98
CCDC28B-204ENST00000469003 THSD7BQ9C0I4 1608 aa21.18■□□□□ 0.98
CCDC28B-204ENST00000469003 CELF2O95319 508 aaKnown RBP21.18■□□□□ 0.98
CCDC28B-204ENST00000469003 VIL1P09327 827 aaKnown RBP21.18■□□□□ 0.98
CCDC28B-204ENST00000469003 ECE1P42892 770 aa21.18■□□□□ 0.98
CCDC28B-204ENST00000469003 SAMD7Q7Z3H4 446 aa21.18■□□□□ 0.98
CCDC28B-204ENST00000469003 MYH16Q9H6N6 1097 aa21.18■□□□□ 0.98
CCDC28B-204ENST00000469003 BSDC1Q9NW68 430 aaPredicted RBP21.18■□□□□ 0.98
CCDC28B-204ENST00000469003 PSME4Q14997 1843 aa21.18■□□□□ 0.98
CCDC28B-204ENST00000469003 CAPNS2Q96L46 248 aa21.17■□□□□ 0.98
CCDC28B-204ENST00000469003 PLA2G12BQ9BX93 195 aa21.17■□□□□ 0.98
CCDC28B-204ENST00000469003 ZNF609O15014 1411 aa21.16■□□□□ 0.98
CCDC28B-204ENST00000469003 HSPA8P11142 646 aaKnown RBP21.16■□□□□ 0.98
CCDC28B-204ENST00000469003 MAP2K1Q02750 393 aaPredicted RBP21.16■□□□□ 0.98
CCDC28B-204ENST00000469003 TBC1D10BQ4KMP7 808 aaPredicted RBP21.16■□□□□ 0.98
CCDC28B-204ENST00000469003 PAXIP1Q6ZW49 1069 aaPredicted RBP21.16■□□□□ 0.98
CCDC28B-204ENST00000469003 FAM9BQ8IZU0 186 aa21.16■□□□□ 0.98
CCDC28B-204ENST00000469003 LINS1Q8NG48 757 aa21.16■□□□□ 0.98
CCDC28B-204ENST00000469003 SPINK5Q9NQ38 1064 aaPredicted RBP21.16■□□□□ 0.98
CCDC28B-204ENST00000469003 EGFRP00533 1210 aa21.15■□□□□ 0.98
CCDC28B-204ENST00000469003 CASP7P55210 303 aa21.15■□□□□ 0.98
CCDC28B-204ENST00000469003 CYP4F22Q6NT55 531 aa21.15■□□□□ 0.98
CCDC28B-204ENST00000469003 SAPCD2Q86UD0 394 aa21.15■□□□□ 0.98
CCDC28B-204ENST00000469003 MINPP1Q9UNW1 487 aa21.15■□□□□ 0.98
CCDC28B-204ENST00000469003 USP48Q86UV5 1035 aa21.14■□□□□ 0.97
CCDC28B-204ENST00000469003 MED23Q9ULK4 1368 aa21.13■□□□□ 0.97
CCDC28B-204ENST00000469003 IGHMBP2P38935 993 aaKnown RBP21.13■□□□□ 0.97
CCDC28B-204ENST00000469003 KIF4BQ2VIQ3 1234 aa21.13■□□□□ 0.97
CCDC28B-204ENST00000469003 RBM26Q5T8P6 1007 aaKnown RBP21.13■□□□□ 0.97
CCDC28B-204ENST00000469003 RSBN1LQ6PCB5 846 aaPredicted RBP21.13■□□□□ 0.97
CCDC28B-204ENST00000469003 PODNQ7Z5L7 613 aa21.13■□□□□ 0.97
CCDC28B-204ENST00000469003 AGBL3Q8NEM8 1001 aa21.13■□□□□ 0.97
CCDC28B-204ENST00000469003 HHIPL1Q96JK4 782 aa21.13■□□□□ 0.97
CCDC28B-204ENST00000469003 ZNF408Q9H9D4 720 aa21.13■□□□□ 0.97
CCDC28B-204ENST00000469003 POLR2AP24928 1970 aaKnown RBP21.12■□□□□ 0.97
CCDC28B-204ENST00000469003 CSF1RP07333 972 aa21.12■□□□□ 0.97
CCDC28B-204ENST00000469003 ITGA6P23229 1130 aa21.12■□□□□ 0.97
CCDC28B-204ENST00000469003 CCT4P50991 539 aaKnown RBP21.12■□□□□ 0.97
CCDC28B-204ENST00000469003 WTIPA6NIX2 430 aaPredicted RBP21.11■□□□□ 0.97
CCDC28B-204ENST00000469003 ZNF280AP59817 542 aaPredicted RBP21.11■□□□□ 0.97
CCDC28B-204ENST00000469003 GRM1Q13255 1194 aa21.11■□□□□ 0.97
CCDC28B-204ENST00000469003 KRT26Q7Z3Y9 468 aa21.11■□□□□ 0.97
CCDC28B-204ENST00000469003 DCPSQ96C86 337 aaKnown RBP21.11■□□□□ 0.97
CCDC28B-204ENST00000469003 USP17L3A6NCW0 530 aa21.1■□□□□ 0.97
CCDC28B-204ENST00000469003 USP17L4A6NCW7 530 aa21.1■□□□□ 0.97
CCDC28B-204ENST00000469003 CCDC85CA6NKD9 419 aa21.1■□□□□ 0.97
CCDC28B-204ENST00000469003 F6X3S4 739 aa21.1■□□□□ 0.97
CCDC28B-204ENST00000469003 MAP2K2P36507 400 aa21.1■□□□□ 0.97
CCDC28B-204ENST00000469003 USP17L1Q7RTZ2 530 aa21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms