RNA–Protein interactions for RNA: ENST00000468949.1

HDAC6-216, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-216ENST00000468949 DDX60Q8IY21 1712 aaKnown RBP10.06□□□□□ -0.8
HDAC6-216ENST00000468949 MYH3P11055 1940 aa10.05□□□□□ -0.8
HDAC6-216ENST00000468949 RTL9Q8NET4 1388 aa10.05□□□□□ -0.8
HDAC6-216ENST00000468949 SURF6O75683 361 aaKnown RBP10.05□□□□□ -0.8
HDAC6-216ENST00000468949 CSF1RP07333 972 aa10.05□□□□□ -0.8
HDAC6-216ENST00000468949 HDAC1Q13547 482 aaPredicted RBP10.05□□□□□ -0.8
HDAC6-216ENST00000468949 ERC1Q8IUD2 1116 aa10.05□□□□□ -0.8
HDAC6-216ENST00000468949 MASTLQ96GX5 879 aa10.05□□□□□ -0.8
HDAC6-216ENST00000468949 KAZALD1Q96I82 304 aa10.05□□□□□ -0.8
HDAC6-216ENST00000468949 SIL1Q9H173 461 aa10.05□□□□□ -0.8
HDAC6-216ENST00000468949 APBB1O00213 710 aa10.04□□□□□ -0.8
HDAC6-216ENST00000468949 ALDH1B1P30837 517 aa10.04□□□□□ -0.8
HDAC6-216ENST00000468949 GRAPQ13588 217 aa10.04□□□□□ -0.8
HDAC6-216ENST00000468949 CRY2Q49AN0 593 aa10.04□□□□□ -0.8
HDAC6-216ENST00000468949 B4GALNT3Q6L9W6 998 aa10.04□□□□□ -0.8
HDAC6-216ENST00000468949 LDHAL6AQ6ZMR3 332 aa10.04□□□□□ -0.8
HDAC6-216ENST00000468949 C3orf67Q6ZVT6 689 aa10.04□□□□□ -0.8
HDAC6-216ENST00000468949 CENPQQ7L2Z9 268 aaPredicted RBP10.04□□□□□ -0.8
HDAC6-216ENST00000468949 GRAPLQ8TC17 118 aaPredicted RBP10.04□□□□□ -0.8
HDAC6-216ENST00000468949 SSH3Q8TE77 659 aa10.04□□□□□ -0.8
HDAC6-216ENST00000468949 CNKSR1Q969H4 720 aa10.04□□□□□ -0.8
HDAC6-216ENST00000468949 GCC1Q96CN9 775 aa10.04□□□□□ -0.8
HDAC6-216ENST00000468949 BCL11AQ9H165 835 aa10.04□□□□□ -0.8
HDAC6-216ENST00000468949 GOLGB1Q14789 3259 aaKnown RBP10.04□□□□□ -0.8
HDAC6-216ENST00000468949 PPEF1O14829 653 aaPredicted RBP10.03□□□□□ -0.8
HDAC6-216ENST00000468949 RAB11FIP3O75154 756 aa10.03□□□□□ -0.8
HDAC6-216ENST00000468949 SRGNP10124 158 aa10.03□□□□□ -0.8
HDAC6-216ENST00000468949 METTL24Q5JXM2 366 aa10.03□□□□□ -0.8
HDAC6-216ENST00000468949 STYK1Q6J9G0 422 aa10.03□□□□□ -0.8
HDAC6-216ENST00000468949 TMC4Q7Z404 712 aa10.03□□□□□ -0.8
HDAC6-216ENST00000468949 TTLL6Q8N841 843 aa10.03□□□□□ -0.8
HDAC6-216ENST00000468949 SEC31BQ9NQW1 1179 aa10.03□□□□□ -0.8
HDAC6-216ENST00000468949 PA2G4Q9UQ80 394 aaKnown RBP10.03□□□□□ -0.8
HDAC6-216ENST00000468949 EXOC6BQ9Y2D4 811 aa10.03□□□□□ -0.8
HDAC6-216ENST00000468949 FER1L6Q2WGJ9 1857 aa10.02□□□□□ -0.8
HDAC6-216ENST00000468949 IL15P40933 162 aaPredicted RBP10.02□□□□□ -0.81
HDAC6-216ENST00000468949 KCNJ4P48050 445 aa10.02□□□□□ -0.81
HDAC6-216ENST00000468949 RPS8P62241 208 aaKnown RBP10.02□□□□□ -0.81
HDAC6-216ENST00000468949 ARHGAP27Q6ZUM4 889 aa10.02□□□□□ -0.81
HDAC6-216ENST00000468949 SIRT2Q8IXJ6 389 aa10.02□□□□□ -0.81
HDAC6-216ENST00000468949 KLHDC4Q8TBB5 520 aa10.02□□□□□ -0.81
HDAC6-216ENST00000468949 KIF1BPQ96EK5 621 aa10.02□□□□□ -0.81
HDAC6-216ENST00000468949 ZNF594Q96JF6 807 aaPredicted RBP10.02□□□□□ -0.81
HDAC6-216ENST00000468949 CRAMP1Q96RY5 1269 aa10.02□□□□□ -0.81
HDAC6-216ENST00000468949 COPRSQ9NQ92 184 aa10.02□□□□□ -0.81
HDAC6-216ENST00000468949 UTRNP46939 3433 aa10.02□□□□□ -0.81
HDAC6-216ENST00000468949 MROH5Q6ZUA9 1318 aa10.02□□□□□ -0.81
HDAC6-216ENST00000468949 KLRG2A4D1S0 409 aaPredicted RBP10.01□□□□□ -0.81
HDAC6-216ENST00000468949 EYA2O00167 538 aa10.01□□□□□ -0.81
HDAC6-216ENST00000468949 BBOX1O75936 387 aa10.01□□□□□ -0.81
HDAC6-216ENST00000468949 CIAO1O76071 339 aa10.01□□□□□ -0.81
HDAC6-216ENST00000468949 HOXA10P31260 410 aaPredicted RBP10.01□□□□□ -0.81
HDAC6-216ENST00000468949 PTPN12Q05209 780 aaKnown RBP10.01□□□□□ -0.81
HDAC6-216ENST00000468949 CELF1Q92879 486 aaKnown RBP10.01□□□□□ -0.81
HDAC6-216ENST00000468949 LRRCC1Q9C099 1032 aa10.01□□□□□ -0.81
HDAC6-216ENST00000468949 BSDC1Q9NW68 430 aaPredicted RBP10.01□□□□□ -0.81
HDAC6-216ENST00000468949 ANKIB1Q9P2G1 1089 aa10.01□□□□□ -0.81
HDAC6-216ENST00000468949 CEP126Q9P2H0 1117 aa10.01□□□□□ -0.81
HDAC6-216ENST00000468949 SBF1O95248 1867 aa10.01□□□□□ -0.81
HDAC6-216ENST00000468949 SLX4Q8IY92 1834 aa10□□□□□ -0.81
HDAC6-216ENST00000468949 RFX5P48382 616 aaPredicted RBP10□□□□□ -0.81
HDAC6-216ENST00000468949 SOGA3Q5TF21 947 aa10□□□□□ -0.81
HDAC6-216ENST00000468949 ANKRD45Q5TZF3 282 aa10□□□□□ -0.81
HDAC6-216ENST00000468949 PRPF40BQ6NWY9 871 aaKnown RBP10□□□□□ -0.81
HDAC6-216ENST00000468949 CLASRPQ8N2M8 674 aaKnown RBP10□□□□□ -0.81
HDAC6-216ENST00000468949 GPATCH3Q96I76 525 aa10□□□□□ -0.81
HDAC6-216ENST00000468949 ANKRD2Q9GZV1 360 aa10□□□□□ -0.81
HDAC6-216ENST00000468949 DCTPP1Q9H773 170 aa10□□□□□ -0.81
HDAC6-216ENST00000468949 AKAP2Q9Y2D5 859 aa10□□□□□ -0.81
HDAC6-216ENST00000468949 NOP58Q9Y2X3 529 aaKnown RBP10□□□□□ -0.81
HDAC6-216ENST00000468949 ZC3H4Q9UPT8 1303 aaKnown RBP10□□□□□ -0.81
HDAC6-216ENST00000468949 IGHDP01880 384 aa9.99□□□□□ -0.81
HDAC6-216ENST00000468949 IFIT2P09913 472 aaKnown RBP9.99□□□□□ -0.81
HDAC6-216ENST00000468949 RASSF7Q02833 373 aa9.99□□□□□ -0.81
HDAC6-216ENST00000468949 LRRC24Q50LG9 513 aa9.99□□□□□ -0.81
HDAC6-216ENST00000468949 RHPN1Q8TCX5 695 aa9.99□□□□□ -0.81
HDAC6-216ENST00000468949 GPBP1L1Q9HC44 474 aaPredicted RBP9.99□□□□□ -0.81
HDAC6-216ENST00000468949 RNF181Q9P0P0 153 aa9.99□□□□□ -0.81
HDAC6-216ENST00000468949 SPEF2Q9C093 1822 aa9.98□□□□□ -0.81
HDAC6-216ENST00000468949 DICER1Q9UPY3 1922 aaKnown RBP9.98□□□□□ -0.81
HDAC6-216ENST00000468949 IFIT1P09914 478 aaKnown RBP9.98□□□□□ -0.81
HDAC6-216ENST00000468949 SLC5A1P13866 664 aa9.98□□□□□ -0.81
HDAC6-216ENST00000468949 CHRNDQ07001 517 aa9.98□□□□□ -0.81
HDAC6-216ENST00000468949 TFCP2Q12800 502 aa9.98□□□□□ -0.81
HDAC6-216ENST00000468949 PUM3Q15397 648 aaKnown RBP9.98□□□□□ -0.81
HDAC6-216ENST00000468949 GORABQ5T7V8 394 aa9.98□□□□□ -0.81
HDAC6-216ENST00000468949 C9orf131Q5VYM1 1079 aa9.98□□□□□ -0.81
HDAC6-216ENST00000468949 SMC5Q8IY18 1101 aa9.98□□□□□ -0.81
HDAC6-216ENST00000468949 REM2Q8IYK8 340 aaPredicted RBP9.98□□□□□ -0.81
HDAC6-216ENST00000468949 SPDYE1Q8NFV5 336 aaPredicted RBP9.98□□□□□ -0.81
HDAC6-216ENST00000468949 ZNF526Q8TF50 670 aaPredicted RBP9.98□□□□□ -0.81
HDAC6-216ENST00000468949 SPOCK2Q92563 424 aa9.98□□□□□ -0.81
HDAC6-216ENST00000468949 PUS3Q9BZE2 481 aaKnown RBP9.98□□□□□ -0.81
HDAC6-216ENST00000468949 IL1RAPL2Q9NP60 686 aa9.98□□□□□ -0.81
HDAC6-216ENST00000468949 CLEC11AQ9Y240 323 aa9.98□□□□□ -0.81
HDAC6-216ENST00000468949 ATP6V0A2Q9Y487 856 aa9.98□□□□□ -0.81
HDAC6-216ENST00000468949 XDHP47989 1333 aa9.98□□□□□ -0.81
HDAC6-216ENST00000468949 LTBP3Q9NS15 1303 aa9.98□□□□□ -0.81
HDAC6-216ENST00000468949 LRRC37AA6NMS7 1700 aa9.97□□□□□ -0.81
HDAC6-216ENST00000468949 NFKBIEO00221 500 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms