RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 TCIRG1Q13488 830 aa10.63□□□□□ -0.71
SYNE1-217ENST00000466159 HS1BP3Q53T59 392 aa10.63□□□□□ -0.71
SYNE1-217ENST00000466159 DNAJC10Q8IXB1 793 aa10.63□□□□□ -0.71
SYNE1-217ENST00000466159 TOGARAM1Q9Y4F4 1720 aa10.63□□□□□ -0.71
SYNE1-217ENST00000466159 PALLDQ8WX93 1383 aa10.62□□□□□ -0.71
SYNE1-217ENST00000466159 STRCQ7RTU9 1775 aa10.62□□□□□ -0.71
SYNE1-217ENST00000466159 A0A0G2JLW4 131 aa10.62□□□□□ -0.71
SYNE1-217ENST00000466159 JAK2O60674 1132 aa10.62□□□□□ -0.71
SYNE1-217ENST00000466159 IFIT1P09914 478 aaKnown RBP10.62□□□□□ -0.71
SYNE1-217ENST00000466159 PDCP20941 246 aa10.62□□□□□ -0.71
SYNE1-217ENST00000466159 CSPP1Q1MSJ5 1256 aa10.62□□□□□ -0.71
SYNE1-217ENST00000466159 PIGBQ92521 554 aa10.62□□□□□ -0.71
SYNE1-217ENST00000466159 FAM89AQ96GI7 184 aa10.62□□□□□ -0.71
SYNE1-217ENST00000466159 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.62□□□□□ -0.71
SYNE1-217ENST00000466159 GIMAP6Q6P9H5 292 aa10.62□□□□□ -0.71
SYNE1-217ENST00000466159 TTC6Q86TZ1 520 aa10.62□□□□□ -0.71
SYNE1-217ENST00000466159 GTF3C6Q969F1 213 aa10.62□□□□□ -0.71
SYNE1-217ENST00000466159 HELLSQ9NRZ9 838 aa10.62□□□□□ -0.71
SYNE1-217ENST00000466159 ATG3Q9NT62 314 aa10.62□□□□□ -0.71
SYNE1-217ENST00000466159 NOL7Q9UMY1 257 aaKnown RBP10.62□□□□□ -0.71
SYNE1-217ENST00000466159 KAT6BQ8WYB5 2073 aa10.62□□□□□ -0.71
SYNE1-217ENST00000466159 CIAO1O76071 339 aa10.61□□□□□ -0.71
SYNE1-217ENST00000466159 HCLS1P14317 486 aaPredicted RBP10.61□□□□□ -0.71
SYNE1-217ENST00000466159 HSP90B1P14625 803 aaKnown RBP10.61□□□□□ -0.71
SYNE1-217ENST00000466159 CCDC57Q2TAC2 916 aa10.61□□□□□ -0.71
SYNE1-217ENST00000466159 ZMYM1Q5SVZ6 1142 aa10.61□□□□□ -0.71
SYNE1-217ENST00000466159 SYNE4Q8N205 404 aa10.61□□□□□ -0.71
SYNE1-217ENST00000466159 BRF1Q92994 677 aa10.61□□□□□ -0.71
SYNE1-217ENST00000466159 CEP126Q9P2H0 1117 aa10.61□□□□□ -0.71
SYNE1-217ENST00000466159 LETM1O95202 739 aaPredicted RBP10.61□□□□□ -0.71
SYNE1-217ENST00000466159 KRT85P78386 507 aa10.61□□□□□ -0.71
SYNE1-217ENST00000466159 TFIP11Q9UBB9 837 aaKnown RBP10.61□□□□□ -0.71
SYNE1-217ENST00000466159 LAMA4Q16363 1823 aa10.61□□□□□ -0.71
SYNE1-217ENST00000466159 HSPD1P10809 573 aaKnown RBP10.6□□□□□ -0.71
SYNE1-217ENST00000466159 ADORA1P30542 326 aa10.6□□□□□ -0.71
SYNE1-217ENST00000466159 FKBP4Q02790 459 aaKnown RBP eCLIP10.6□□□□□ -0.71
SYNE1-217ENST00000466159 ILDR1Q86SU0 546 aaPredicted RBP10.6□□□□□ -0.71
SYNE1-217ENST00000466159 MAST3O60307 1309 aa10.6□□□□□ -0.71
SYNE1-217ENST00000466159 RNF113AO15541 343 aaKnown RBP10.6□□□□□ -0.71
SYNE1-217ENST00000466159 PDIA4P13667 645 aaKnown RBP10.6□□□□□ -0.71
SYNE1-217ENST00000466159 FGD1P98174 961 aa10.6□□□□□ -0.71
SYNE1-217ENST00000466159 SCRN1Q12765 414 aa10.6□□□□□ -0.71
SYNE1-217ENST00000466159 DDX11Q96FC9 970 aa10.6□□□□□ -0.71
SYNE1-217ENST00000466159 DSCC1Q9BVC3 393 aa10.6□□□□□ -0.71
SYNE1-217ENST00000466159 BTG4Q9NY30 223 aa10.6□□□□□ -0.71
SYNE1-217ENST00000466159 M0R2C6 588 aa10.59□□□□□ -0.71
SYNE1-217ENST00000466159 HLFQ16534 295 aa10.59□□□□□ -0.71
SYNE1-217ENST00000466159 KIF6Q6ZMV9 814 aa10.59□□□□□ -0.71
SYNE1-217ENST00000466159 DHX32Q7L7V1 743 aaKnown RBP10.59□□□□□ -0.71
SYNE1-217ENST00000466159 FAM184AQ8NB25 1140 aa10.59□□□□□ -0.71
SYNE1-217ENST00000466159 XAGE2Q96GT9 111 aa10.59□□□□□ -0.71
SYNE1-217ENST00000466159 FUCA2Q9BTY2 467 aa10.59□□□□□ -0.71
SYNE1-217ENST00000466159 PCCAP05165 728 aaPredicted RBP10.59□□□□□ -0.71
SYNE1-217ENST00000466159 GPTP24298 496 aa10.59□□□□□ -0.71
SYNE1-217ENST00000466159 TRIM28Q13263 835 aaKnown RBP10.59□□□□□ -0.71
SYNE1-217ENST00000466159 GORABQ5T7V8 394 aa10.59□□□□□ -0.71
SYNE1-217ENST00000466159 OSBP2Q969R2 916 aa10.59□□□□□ -0.71
SYNE1-217ENST00000466159 CCDC39Q9UFE4 941 aa10.59□□□□□ -0.71
SYNE1-217ENST00000466159 USP25Q9UHP3 1055 aa10.59□□□□□ -0.71
SYNE1-217ENST00000466159 E7EWF7 191 aa10.58□□□□□ -0.72
SYNE1-217ENST00000466159 STARD3NLO95772 234 aa10.58□□□□□ -0.72
SYNE1-217ENST00000466159 LIG1P18858 919 aa10.58□□□□□ -0.72
SYNE1-217ENST00000466159 APOBRQ0VD83 1088 aa10.58□□□□□ -0.72
SYNE1-217ENST00000466159 SCARF1Q14162 830 aa10.58□□□□□ -0.72
SYNE1-217ENST00000466159 UVSSAQ2YD98 709 aa10.58□□□□□ -0.72
SYNE1-217ENST00000466159 TAF7LQ5H9L4 462 aa10.58□□□□□ -0.72
SYNE1-217ENST00000466159 CCDC158Q5M9N0 1113 aa10.58□□□□□ -0.72
SYNE1-217ENST00000466159 TTC39AQ5SRH9 613 aa10.58□□□□□ -0.72
SYNE1-217ENST00000466159 TTLL5Q6EMB2 1281 aa10.58□□□□□ -0.72
SYNE1-217ENST00000466159 CHST3Q7LGC8 479 aa10.58□□□□□ -0.72
SYNE1-217ENST00000466159 ZBTB38Q8NAP3 1195 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-217ENST00000466159 TEX13AQ9BXU3 409 aaPredicted RBP10.58□□□□□ -0.72
SYNE1-217ENST00000466159 ZKSCAN5Q9Y2L8 839 aa10.58□□□□□ -0.72
SYNE1-217ENST00000466159 CSF1RP07333 972 aa10.58□□□□□ -0.72
SYNE1-217ENST00000466159 HMGB1P09429 215 aaKnown RBP10.58□□□□□ -0.72
SYNE1-217ENST00000466159 EXOSC10Q01780 885 aaKnown RBP10.58□□□□□ -0.72
SYNE1-217ENST00000466159 IFIT5Q13325 482 aaKnown RBP10.58□□□□□ -0.72
SYNE1-217ENST00000466159 VSIG10Q8N0Z9 540 aa10.58□□□□□ -0.72
SYNE1-217ENST00000466159 MPNDQ8N594 471 aa10.58□□□□□ -0.72
SYNE1-217ENST00000466159 SPATA32Q96LK8 384 aa10.58□□□□□ -0.72
SYNE1-217ENST00000466159 ELP1O95163 1332 aa10.58□□□□□ -0.72
SYNE1-217ENST00000466159 PFKFB2O60825 505 aa10.57□□□□□ -0.72
SYNE1-217ENST00000466159 CAMK4Q16566 473 aa10.57□□□□□ -0.72
SYNE1-217ENST00000466159 PI16Q6UXB8 463 aa10.57□□□□□ -0.72
SYNE1-217ENST00000466159 GIGYF2Q6Y7W6 1299 aaKnown RBP10.57□□□□□ -0.72
SYNE1-217ENST00000466159 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.57□□□□□ -0.72
SYNE1-217ENST00000466159 SLC4A9Q96Q91 983 aa10.57□□□□□ -0.72
SYNE1-217ENST00000466159 SCAND2PQ9GZW5 306 aaPredicted RBP10.57□□□□□ -0.72
SYNE1-217ENST00000466159 AKAP2Q9Y2D5 859 aa10.57□□□□□ -0.72
SYNE1-217ENST00000466159 ITGB4P16144 1822 aa10.57□□□□□ -0.72
SYNE1-217ENST00000466159 MAP3K15Q6ZN16 1313 aa10.57□□□□□ -0.72
SYNE1-217ENST00000466159 H3BQV1 296 aa10.57□□□□□ -0.72
SYNE1-217ENST00000466159 ZNF500O60304 480 aaPredicted RBP10.57□□□□□ -0.72
SYNE1-217ENST00000466159 PPFIA3O75145 1194 aa10.57□□□□□ -0.72
SYNE1-217ENST00000466159 PTMAP06454 111 aaKnown RBP10.57□□□□□ -0.72
SYNE1-217ENST00000466159 CCT2P78371 535 aaKnown RBP10.57□□□□□ -0.72
SYNE1-217ENST00000466159 HSP90AB3PQ58FF7 597 aa10.57□□□□□ -0.72
SYNE1-217ENST00000466159 IFFO2Q5TF58 517 aa10.57□□□□□ -0.72
SYNE1-217ENST00000466159 LEO1Q8WVC0 666 aaPredicted RBP10.57□□□□□ -0.72
SYNE1-217ENST00000466159 PLA2G12BQ9BX93 195 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms