RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 PDE8AO60658 829 aa22.52■■□□□ 1.2
COL7A1-205ENST00000465238 FMR1Q06787 632 aaKnown RBP eCLIP22.52■■□□□ 1.2
COL7A1-205ENST00000465238 FKBP5Q13451 457 aaPredicted RBP22.52■■□□□ 1.2
COL7A1-205ENST00000465238 CCDC152Q4G0S7 254 aa22.52■■□□□ 1.2
COL7A1-205ENST00000465238 CNOT7Q9UIV1 285 aaKnown RBP22.52■■□□□ 1.2
COL7A1-205ENST00000465238 WDR33Q9C0J8 1336 aaKnown RBP22.52■■□□□ 1.2
COL7A1-205ENST00000465238 PI4KAP2A4QPH2 592 aa22.51■■□□□ 1.19
COL7A1-205ENST00000465238 H7C1D1 291 aa22.51■■□□□ 1.19
COL7A1-205ENST00000465238 RIMBP2O15034 1052 aa22.51■■□□□ 1.19
COL7A1-205ENST00000465238 ALDH1L2Q3SY69 923 aa22.51■■□□□ 1.19
COL7A1-205ENST00000465238 CST9Q5W186 159 aa22.51■■□□□ 1.19
COL7A1-205ENST00000465238 PI4KAP1Q8N8J0 262 aa22.51■■□□□ 1.19
COL7A1-205ENST00000465238 TBC1D16Q8TBP0 767 aa22.51■■□□□ 1.19
COL7A1-205ENST00000465238 SSH1Q8WYL5 1049 aa22.51■■□□□ 1.19
COL7A1-205ENST00000465238 DPF2Q92785 391 aa22.51■■□□□ 1.19
COL7A1-205ENST00000465238 DBNDD1Q9H9R9 158 aa22.51■■□□□ 1.19
COL7A1-205ENST00000465238 SEC31BQ9NQW1 1179 aa22.51■■□□□ 1.19
COL7A1-205ENST00000465238 WBP1LQ9NX94 342 aa22.51■■□□□ 1.19
COL7A1-205ENST00000465238 MAP3K2Q9Y2U5 619 aa22.51■■□□□ 1.19
COL7A1-205ENST00000465238 CTCFP49711 727 aaPredicted RBP22.5■■□□□ 1.19
COL7A1-205ENST00000465238 MRPL50Q8N5N7 158 aaKnown RBP22.5■■□□□ 1.19
COL7A1-205ENST00000465238 PRDM10Q9NQV6 1147 aa22.5■■□□□ 1.19
COL7A1-205ENST00000465238 PODXL2Q9NZ53 605 aa22.5■■□□□ 1.19
COL7A1-205ENST00000465238 PSMD14O00487 310 aa22.49■■□□□ 1.19
COL7A1-205ENST00000465238 ECE1P42892 770 aa22.49■■□□□ 1.19
COL7A1-205ENST00000465238 HIRAP54198 1017 aaPredicted RBP22.49■■□□□ 1.19
COL7A1-205ENST00000465238 MAP2K1Q02750 393 aaPredicted RBP22.49■■□□□ 1.19
COL7A1-205ENST00000465238 YTHDC1Q96MU7 727 aaKnown RBP22.49■■□□□ 1.19
COL7A1-205ENST00000465238 SMC4Q9NTJ3 1288 aa22.49■■□□□ 1.19
COL7A1-205ENST00000465238 ECE2O60344 883 aa22.48■■□□□ 1.19
COL7A1-205ENST00000465238 NEXNQ0ZGT2 675 aa22.48■■□□□ 1.19
COL7A1-205ENST00000465238 MICALL2Q8IY33 904 aa22.48■■□□□ 1.19
COL7A1-205ENST00000465238 TRPM4Q8TD43 1214 aa22.48■■□□□ 1.19
COL7A1-205ENST00000465238 GLIS2Q9BZE0 524 aaPredicted RBP22.48■■□□□ 1.19
COL7A1-205ENST00000465238 ZC3H12CQ9C0D7 883 aaKnown RBP22.48■■□□□ 1.19
COL7A1-205ENST00000465238 ZBTB12Q9Y330 459 aaPredicted RBP22.48■■□□□ 1.19
COL7A1-205ENST00000465238 TLL2Q9Y6L7 1015 aa22.48■■□□□ 1.19
COL7A1-205ENST00000465238 RPS12P25398 132 aaKnown RBP22.47■■□□□ 1.19
COL7A1-205ENST00000465238 CDC37L1Q7L3B6 337 aa22.47■■□□□ 1.19
COL7A1-205ENST00000465238 CAPNS2Q96L46 248 aa22.47■■□□□ 1.19
COL7A1-205ENST00000465238 ANKIB1Q9P2G1 1089 aa22.47■■□□□ 1.19
COL7A1-205ENST00000465238 THSD7BQ9C0I4 1608 aa22.46■■□□□ 1.19
COL7A1-205ENST00000465238 CELF2O95319 508 aaKnown RBP22.46■■□□□ 1.19
COL7A1-205ENST00000465238 DOK7Q18PE1 504 aa22.46■■□□□ 1.19
COL7A1-205ENST00000465238 PAXIP1Q6ZW49 1069 aaPredicted RBP22.46■■□□□ 1.19
COL7A1-205ENST00000465238 DNAAF4Q8WXU2 420 aa22.46■■□□□ 1.19
COL7A1-205ENST00000465238 JARID2Q92833 1246 aaPredicted RBP22.46■■□□□ 1.19
COL7A1-205ENST00000465238 GGA1Q9UJY5 639 aa22.46■■□□□ 1.19
COL7A1-205ENST00000465238 SHTN1A0MZ66 631 aa22.45■■□□□ 1.18
COL7A1-205ENST00000465238 CAPN15O75808 1086 aa22.45■■□□□ 1.18
COL7A1-205ENST00000465238 UFL1O94874 794 aa22.45■■□□□ 1.18
COL7A1-205ENST00000465238 IGKV5-2P06315 115 aa22.45■■□□□ 1.18
COL7A1-205ENST00000465238 RARSP54136 660 aaKnown RBP22.45■■□□□ 1.18
COL7A1-205ENST00000465238 ANKRD18AQ8IVF6 992 aa22.45■■□□□ 1.18
COL7A1-205ENST00000465238 GPR101Q96P66 508 aaPredicted RBP22.45■■□□□ 1.18
COL7A1-205ENST00000465238 MYH3P11055 1940 aa22.45■■□□□ 1.18
COL7A1-205ENST00000465238 CYP4F22Q6NT55 531 aa22.44■■□□□ 1.18
COL7A1-205ENST00000465238 SAPCD2Q86UD0 394 aa22.44■■□□□ 1.18
COL7A1-205ENST00000465238 RTL9Q8NET4 1388 aa22.44■■□□□ 1.18
COL7A1-205ENST00000465238 CCDC85AQ96PX6 553 aaPredicted RBP22.44■■□□□ 1.18
COL7A1-205ENST00000465238 SCN9AQ15858 1988 aa22.43■■□□□ 1.18
COL7A1-205ENST00000465238 PTPRCP08575 1304 aa22.43■■□□□ 1.18
COL7A1-205ENST00000465238 XDHP47989 1333 aa22.43■■□□□ 1.18
COL7A1-205ENST00000465238 G3V3G9 751 aa22.43■■□□□ 1.18
COL7A1-205ENST00000465238 CTSWP56202 376 aa22.43■■□□□ 1.18
COL7A1-205ENST00000465238 DCAF8Q5TAQ9 597 aa22.43■■□□□ 1.18
COL7A1-205ENST00000465238 SAMD7Q7Z3H4 446 aa22.43■■□□□ 1.18
COL7A1-205ENST00000465238 CDC5LQ99459 802 aaKnown RBP22.43■■□□□ 1.18
COL7A1-205ENST00000465238 KCNQ5Q9NR82 932 aa22.43■■□□□ 1.18
COL7A1-205ENST00000465238 F6X3S4 739 aa22.42■■□□□ 1.18
COL7A1-205ENST00000465238 LBX1P52954 281 aa22.42■■□□□ 1.18
COL7A1-205ENST00000465238 GRM1Q13255 1194 aa22.42■■□□□ 1.18
COL7A1-205ENST00000465238 HHIPL1Q96JK4 782 aa22.42■■□□□ 1.18
COL7A1-205ENST00000465238 NEURL1BA8MQ27 555 aa22.41■■□□□ 1.18
COL7A1-205ENST00000465238 VIL1P09327 827 aaKnown RBP22.41■■□□□ 1.18
COL7A1-205ENST00000465238 TBC1D10BQ4KMP7 808 aaPredicted RBP22.41■■□□□ 1.18
COL7A1-205ENST00000465238 TTLL11Q8NHH1 800 aa22.41■■□□□ 1.18
COL7A1-205ENST00000465238 HSPA8P11142 646 aaKnown RBP22.4■■□□□ 1.18
COL7A1-205ENST00000465238 MAP2K2P36507 400 aa22.4■■□□□ 1.18
COL7A1-205ENST00000465238 BRPF1P55201 1214 aaPredicted RBP22.4■■□□□ 1.18
COL7A1-205ENST00000465238 CWF19L2Q2TBE0 894 aaKnown RBP22.4■■□□□ 1.18
COL7A1-205ENST00000465238 LINS1Q8NG48 757 aa22.4■■□□□ 1.18
COL7A1-205ENST00000465238 BEGAINQ9BUH8 593 aa22.4■■□□□ 1.18
COL7A1-205ENST00000465238 ZNF408Q9H9D4 720 aa22.4■■□□□ 1.18
COL7A1-205ENST00000465238 POLR2AP24928 1970 aaKnown RBP22.39■■□□□ 1.18
COL7A1-205ENST00000465238 PSME4Q14997 1843 aa22.39■■□□□ 1.17
COL7A1-205ENST00000465238 ATP2B4P23634 1241 aa22.39■■□□□ 1.17
COL7A1-205ENST00000465238 SLC4A10Q6U841 1118 aa22.39■■□□□ 1.17
COL7A1-205ENST00000465238 USP48Q86UV5 1035 aa22.39■■□□□ 1.17
COL7A1-205ENST00000465238 NOB1Q9ULX3 412 aaKnown RBP22.39■■□□□ 1.17
COL7A1-205ENST00000465238 ZNF609O15014 1411 aa22.39■■□□□ 1.17
COL7A1-205ENST00000465238 H7C1W4 665 aa22.38■■□□□ 1.17
COL7A1-205ENST00000465238 EGFRP00533 1210 aa22.38■■□□□ 1.17
COL7A1-205ENST00000465238 KRT26Q7Z3Y9 468 aa22.38■■□□□ 1.17
COL7A1-205ENST00000465238 DCPSQ96C86 337 aaKnown RBP22.38■■□□□ 1.17
COL7A1-205ENST00000465238 GREM2Q9H772 168 aa22.38■■□□□ 1.17
COL7A1-205ENST00000465238 BSDC1Q9NW68 430 aaPredicted RBP22.38■■□□□ 1.17
COL7A1-205ENST00000465238 KIF16BQ96L93 1317 aa22.37■■□□□ 1.17
COL7A1-205ENST00000465238 KIF4BQ2VIQ3 1234 aa22.37■■□□□ 1.17
COL7A1-205ENST00000465238 RBM26Q5T8P6 1007 aaKnown RBP22.37■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms