RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 LRRFIP2Q9Y608 721 aaKnown RBP28.63■■■□□ 2.17
CCDC28B-203ENST00000461819 PANK1Q8TE04 598 aa28.62■■■□□ 2.17
CCDC28B-203ENST00000461819 C6orf229H3BNL8 230 aa28.61■■■□□ 2.17
CCDC28B-203ENST00000461819 PPIP5K2O43314 1243 aa28.61■■■□□ 2.17
CCDC28B-203ENST00000461819 LARGE2Q8N3Y3 721 aa28.61■■■□□ 2.17
CCDC28B-203ENST00000461819 ZNF594Q96JF6 807 aaPredicted RBP28.61■■■□□ 2.17
CCDC28B-203ENST00000461819 XDHP47989 1333 aa28.61■■■□□ 2.17
CCDC28B-203ENST00000461819 AOC3Q16853 763 aa28.6■■■□□ 2.17
CCDC28B-203ENST00000461819 ZNF526Q8TF50 670 aaPredicted RBP28.6■■■□□ 2.17
CCDC28B-203ENST00000461819 PODXL2Q9NZ53 605 aa28.6■■■□□ 2.17
CCDC28B-203ENST00000461819 MINPP1Q9UNW1 487 aa28.6■■■□□ 2.17
CCDC28B-203ENST00000461819 UFL1O94874 794 aa28.59■■■□□ 2.17
CCDC28B-203ENST00000461819 ZNF784Q8NCA9 323 aaPredicted RBP28.59■■■□□ 2.17
CCDC28B-203ENST00000461819 JDP2Q8WYK2 163 aa28.59■■■□□ 2.17
CCDC28B-203ENST00000461819 VPS33BQ9H267 617 aa28.59■■■□□ 2.17
CCDC28B-203ENST00000461819 GGA1Q9UJY5 639 aa28.59■■■□□ 2.17
CCDC28B-203ENST00000461819 COL4A5P29400 1685 aa28.58■■■□□ 2.17
CCDC28B-203ENST00000461819 LDHAL6AQ6ZMR3 332 aa28.58■■■□□ 2.17
CCDC28B-203ENST00000461819 TBC1D16Q8TBP0 767 aa28.58■■■□□ 2.17
CCDC28B-203ENST00000461819 CNNM1Q9NRU3 951 aa28.58■■■□□ 2.17
CCDC28B-203ENST00000461819 POLLQ9UGP5 575 aa28.58■■■□□ 2.17
CCDC28B-203ENST00000461819 GNAI2P04899 355 aa28.57■■■□□ 2.16
CCDC28B-203ENST00000461819 EYA3Q99504 573 aa28.57■■■□□ 2.16
CCDC28B-203ENST00000461819 KIAA2012Q0VF49 1180 aa28.56■■■□□ 2.16
CCDC28B-203ENST00000461819 WASHC4Q2M389 1173 aa28.56■■■□□ 2.16
CCDC28B-203ENST00000461819 NIM1KQ8IY84 436 aa28.56■■■□□ 2.16
CCDC28B-203ENST00000461819 ANKRD2Q9GZV1 360 aa28.56■■■□□ 2.16
CCDC28B-203ENST00000461819 ATP2B4P23634 1241 aa28.55■■■□□ 2.16
CCDC28B-203ENST00000461819 CHRNDQ07001 517 aa28.55■■■□□ 2.16
CCDC28B-203ENST00000461819 GPR101Q96P66 508 aaPredicted RBP28.55■■■□□ 2.16
CCDC28B-203ENST00000461819 RIMBP2O15034 1052 aa28.54■■■□□ 2.16
CCDC28B-203ENST00000461819 KDM2BQ8NHM5 1336 aa28.53■■■□□ 2.16
CCDC28B-203ENST00000461819 KLHDC4Q8TBB5 520 aa28.53■■■□□ 2.16
CCDC28B-203ENST00000461819 GPBP1L1Q9HC44 474 aaPredicted RBP28.53■■■□□ 2.16
CCDC28B-203ENST00000461819 KCNJ4P48050 445 aa28.52■■■□□ 2.16
CCDC28B-203ENST00000461819 MVPQ14764 893 aaKnown RBP28.52■■■□□ 2.16
CCDC28B-203ENST00000461819 DPY19L2Q6NUT2 758 aa28.52■■■□□ 2.16
CCDC28B-203ENST00000461819 COG6Q9Y2V7 657 aa28.52■■■□□ 2.16
CCDC28B-203ENST00000461819 ZBTB7BO15156 539 aaPredicted RBP28.51■■■□□ 2.15
CCDC28B-203ENST00000461819 PDE3AQ14432 1141 aa28.51■■■□□ 2.15
CCDC28B-203ENST00000461819 PUS3Q9BZE2 481 aaKnown RBP28.51■■■□□ 2.15
CCDC28B-203ENST00000461819 ZC3H12CQ9C0D7 883 aaKnown RBP28.51■■■□□ 2.15
CCDC28B-203ENST00000461819 ZNF541Q9H0D2 1346 aa28.5■■■□□ 2.15
CCDC28B-203ENST00000461819 GLTPD2A6NH11 291 aa28.5■■■□□ 2.15
CCDC28B-203ENST00000461819 FZD9O00144 591 aa28.5■■■□□ 2.15
CCDC28B-203ENST00000461819 EIF6P56537 245 aaKnown RBP28.5■■■□□ 2.15
CCDC28B-203ENST00000461819 HELBQ8NG08 1087 aaPredicted RBP28.5■■■□□ 2.15
CCDC28B-203ENST00000461819 DDX19BQ9UMR2 479 aa28.5■■■□□ 2.15
CCDC28B-203ENST00000461819 LEMD3Q9Y2U8 911 aa28.5■■■□□ 2.15
CCDC28B-203ENST00000461819 G3V3G9 751 aa28.49■■■□□ 2.15
CCDC28B-203ENST00000461819 SRGAP3O43295 1099 aa28.49■■■□□ 2.15
CCDC28B-203ENST00000461819 RFX5P48382 616 aaPredicted RBP28.49■■■□□ 2.15
CCDC28B-203ENST00000461819 DCAF8Q5TAQ9 597 aa28.49■■■□□ 2.15
CCDC28B-203ENST00000461819 C20orf194Q5TEA3 1177 aa28.49■■■□□ 2.15
CCDC28B-203ENST00000461819 C1orf115Q9H7X2 142 aa28.49■■■□□ 2.15
CCDC28B-203ENST00000461819 ZNF804BA4D1E1 1349 aa28.48■■■□□ 2.15
CCDC28B-203ENST00000461819 TAF5LO75529 589 aa28.48■■■□□ 2.15
CCDC28B-203ENST00000461819 ZNRF3Q9ULT6 936 aa28.48■■■□□ 2.15
CCDC28B-203ENST00000461819 MED23Q9ULK4 1368 aa28.48■■■□□ 2.15
CCDC28B-203ENST00000461819 MROH5Q6ZUA9 1318 aa28.47■■■□□ 2.15
CCDC28B-203ENST00000461819 WTIPA6NIX2 430 aaPredicted RBP28.47■■■□□ 2.15
CCDC28B-203ENST00000461819 RRP1P56182 461 aaKnown RBP28.47■■■□□ 2.15
CCDC28B-203ENST00000461819 PTPN12Q05209 780 aaKnown RBP28.47■■■□□ 2.15
CCDC28B-203ENST00000461819 MTX1Q13505 466 aa28.47■■■□□ 2.15
CCDC28B-203ENST00000461819 LRRC24Q50LG9 513 aa28.47■■■□□ 2.15
CCDC28B-203ENST00000461819 DBNDD1Q9H9R9 158 aa28.47■■■□□ 2.15
CCDC28B-203ENST00000461819 WDR90Q96KV7 1748 aa28.46■■■□□ 2.15
CCDC28B-203ENST00000461819 DOK7Q18PE1 504 aa28.46■■■□□ 2.15
CCDC28B-203ENST00000461819 METTL24Q5JXM2 366 aa28.46■■■□□ 2.15
CCDC28B-203ENST00000461819 SIL1Q9H173 461 aa28.46■■■□□ 2.15
CCDC28B-203ENST00000461819 RIPOR2Q9Y4F9 1068 aa28.46■■■□□ 2.15
CCDC28B-203ENST00000461819 ECE2O60344 883 aa28.45■■■□□ 2.14
CCDC28B-203ENST00000461819 DDNO94850 711 aaPredicted RBP28.45■■■□□ 2.14
CCDC28B-203ENST00000461819 CHMP4BQ9H444 224 aaKnown RBP28.45■■■□□ 2.14
CCDC28B-203ENST00000461819 EYA2O00167 538 aa28.44■■■□□ 2.14
CCDC28B-203ENST00000461819 GJA3Q9Y6H8 435 aa28.44■■■□□ 2.14
CCDC28B-203ENST00000461819 NMRK2Q9NPI5 230 aa28.43■■■□□ 2.14
CCDC28B-203ENST00000461819 PA2G4Q9UQ80 394 aaKnown RBP28.43■■■□□ 2.14
CCDC28B-203ENST00000461819 SCN9AQ15858 1988 aa28.42■■■□□ 2.14
CCDC28B-203ENST00000461819 PSME4Q14997 1843 aa28.42■■■□□ 2.14
CCDC28B-203ENST00000461819 PNMA6EA0A0J9YXQ4 647 aa28.42■■■□□ 2.14
CCDC28B-203ENST00000461819 SNAP23O00161 211 aa28.42■■■□□ 2.14
CCDC28B-203ENST00000461819 GPC2Q8N158 579 aa28.42■■■□□ 2.14
CCDC28B-203ENST00000461819 COPRSQ9NQ92 184 aa28.42■■■□□ 2.14
CCDC28B-203ENST00000461819 FBXO3Q9UK99 471 aa28.42■■■□□ 2.14
CCDC28B-203ENST00000461819 SCN4AP35499 1836 aa28.41■■■□□ 2.14
CCDC28B-203ENST00000461819 YDJCA8MPS7 323 aa28.41■■■□□ 2.14
CCDC28B-203ENST00000461819 CIAO1O76071 339 aa28.41■■■□□ 2.14
CCDC28B-203ENST00000461819 KLRK1P26718 216 aa28.41■■■□□ 2.14
CCDC28B-203ENST00000461819 RAD17O75943 681 aa28.4■■■□□ 2.14
CCDC28B-203ENST00000461819 CXCL9Q07325 125 aa28.4■■■□□ 2.14
CCDC28B-203ENST00000461819 CIAPIN1Q6FI81 312 aa28.4■■■□□ 2.14
CCDC28B-203ENST00000461819 RRAGCQ9HB90 399 aa28.4■■■□□ 2.14
CCDC28B-203ENST00000461819 ATP8B2P98198 1209 aa28.39■■■□□ 2.14
CCDC28B-203ENST00000461819 TNIP1Q15025 636 aa28.39■■■□□ 2.14
CCDC28B-203ENST00000461819 ATG9AQ7Z3C6 839 aa28.39■■■□□ 2.14
CCDC28B-203ENST00000461819 TXNRD3Q86VQ6 643 aa28.39■■■□□ 2.14
CCDC28B-203ENST00000461819 PDE8BO95263 885 aa28.38■■■□□ 2.13
CCDC28B-203ENST00000461819 IL15P40933 162 aaPredicted RBP28.38■■■□□ 2.13
CCDC28B-203ENST00000461819 UBE4AQ14139 1066 aa28.38■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms