RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 G2E3Q7L622 706 aa29.18■■■□□ 2.26
PTPN4-207ENST00000460162 ANKRD18AQ8IVF6 992 aa29.18■■■□□ 2.26
PTPN4-207ENST00000460162 DPF2Q92785 391 aa29.18■■■□□ 2.26
PTPN4-207ENST00000460162 CCDC85AQ96PX6 553 aaPredicted RBP29.18■■■□□ 2.26
PTPN4-207ENST00000460162 ANKIB1Q9P2G1 1089 aa29.18■■■□□ 2.26
PTPN4-207ENST00000460162 PGAP2Q9UHJ9 254 aa29.18■■■□□ 2.26
PTPN4-207ENST00000460162 FLIIQ13045 1269 aa29.17■■■□□ 2.26
PTPN4-207ENST00000460162 CWF19L2Q2TBE0 894 aaKnown RBP29.17■■■□□ 2.26
PTPN4-207ENST00000460162 MICALL2Q8IY33 904 aa29.17■■■□□ 2.26
PTPN4-207ENST00000460162 CDC5LQ99459 802 aaKnown RBP29.17■■■□□ 2.26
PTPN4-207ENST00000460162 CNOT7Q9UIV1 285 aaKnown RBP29.17■■■□□ 2.26
PTPN4-207ENST00000460162 GGA1Q9UJY5 639 aa29.17■■■□□ 2.26
PTPN4-207ENST00000460162 H7C1D1 291 aa29.16■■■□□ 2.26
PTPN4-207ENST00000460162 TRAF5O00463 557 aa29.16■■■□□ 2.26
PTPN4-207ENST00000460162 RPS12P25398 132 aaKnown RBP29.16■■■□□ 2.26
PTPN4-207ENST00000460162 TRPM4Q8TD43 1214 aa29.16■■■□□ 2.26
PTPN4-207ENST00000460162 GPR101Q96P66 508 aaPredicted RBP29.16■■■□□ 2.26
PTPN4-207ENST00000460162 ZC3H12CQ9C0D7 883 aaKnown RBP29.16■■■□□ 2.26
PTPN4-207ENST00000460162 XDHP47989 1333 aa29.16■■■□□ 2.26
PTPN4-207ENST00000460162 FMR1Q06787 632 aaKnown RBP eCLIP29.15■■■□□ 2.26
PTPN4-207ENST00000460162 ZBTB12Q9Y330 459 aaPredicted RBP29.15■■■□□ 2.26
PTPN4-207ENST00000460162 ZNF609O15014 1411 aa29.14■■■□□ 2.26
PTPN4-207ENST00000460162 DOK7Q18PE1 504 aa29.14■■■□□ 2.26
PTPN4-207ENST00000460162 HIRAP54198 1017 aaPredicted RBP29.13■■■□□ 2.25
PTPN4-207ENST00000460162 FKBP5Q13451 457 aaPredicted RBP29.13■■■□□ 2.25
PTPN4-207ENST00000460162 TTLL11Q8NHH1 800 aa29.13■■■□□ 2.25
PTPN4-207ENST00000460162 SALL2Q9Y467 1007 aaPredicted RBP29.13■■■□□ 2.25
PTPN4-207ENST00000460162 SHTN1A0MZ66 631 aa29.12■■■□□ 2.25
PTPN4-207ENST00000460162 CST9Q5W186 159 aa29.12■■■□□ 2.25
PTPN4-207ENST00000460162 UBE3BQ7Z3V4 1068 aa29.12■■■□□ 2.25
PTPN4-207ENST00000460162 TNS4Q8IZW8 715 aa29.12■■■□□ 2.25
PTPN4-207ENST00000460162 DNAAF4Q8WXU2 420 aa29.12■■■□□ 2.25
PTPN4-207ENST00000460162 AIDAQ96BJ3 306 aa29.12■■■□□ 2.25
PTPN4-207ENST00000460162 GLIS2Q9BZE0 524 aaPredicted RBP29.12■■■□□ 2.25
PTPN4-207ENST00000460162 MYH16Q9H6N6 1097 aa29.12■■■□□ 2.25
PTPN4-207ENST00000460162 WDR33Q9C0J8 1336 aaKnown RBP29.12■■■□□ 2.25
PTPN4-207ENST00000460162 H7C1W4 665 aa29.11■■■□□ 2.25
PTPN4-207ENST00000460162 VAMP4O75379 141 aa29.11■■■□□ 2.25
PTPN4-207ENST00000460162 GCKRQ14397 625 aa29.11■■■□□ 2.25
PTPN4-207ENST00000460162 TLL2Q9Y6L7 1015 aa29.11■■■□□ 2.25
PTPN4-207ENST00000460162 G3V3G9 751 aa29.1■■■□□ 2.25
PTPN4-207ENST00000460162 FOXN1O15353 648 aa29.1■■■□□ 2.25
PTPN4-207ENST00000460162 EXOSC9Q06265 439 aaKnown RBP29.1■■■□□ 2.25
PTPN4-207ENST00000460162 DCAF8Q5TAQ9 597 aa29.1■■■□□ 2.25
PTPN4-207ENST00000460162 CDC37L1Q7L3B6 337 aa29.1■■■□□ 2.25
PTPN4-207ENST00000460162 GREM2Q9H772 168 aa29.1■■■□□ 2.25
PTPN4-207ENST00000460162 ATP2B4P23634 1241 aa29.09■■■□□ 2.25
PTPN4-207ENST00000460162 ECE1P42892 770 aa29.09■■■□□ 2.25
PTPN4-207ENST00000460162 LINS1Q8NG48 757 aa29.09■■■□□ 2.25
PTPN4-207ENST00000460162 PLA2G12BQ9BX93 195 aa29.09■■■□□ 2.25
PTPN4-207ENST00000460162 KCNQ5Q9NR82 932 aa29.09■■■□□ 2.25
PTPN4-207ENST00000460162 BSDC1Q9NW68 430 aaPredicted RBP29.09■■■□□ 2.25
PTPN4-207ENST00000460162 CELF2O95319 508 aaKnown RBP29.08■■■□□ 2.25
PTPN4-207ENST00000460162 WBP1LQ9NX94 342 aa29.08■■■□□ 2.25
PTPN4-207ENST00000460162 MED23Q9ULK4 1368 aa29.08■■■□□ 2.25
PTPN4-207ENST00000460162 VIL1P09327 827 aaKnown RBP29.07■■■□□ 2.24
PTPN4-207ENST00000460162 SAMD7Q7Z3H4 446 aa29.07■■■□□ 2.24
PTPN4-207ENST00000460162 FAM9BQ8IZU0 186 aa29.07■■■□□ 2.24
PTPN4-207ENST00000460162 CAPNS2Q96L46 248 aa29.07■■■□□ 2.24
PTPN4-207ENST00000460162 MAP2K1Q02750 393 aaPredicted RBP29.06■■■□□ 2.24
PTPN4-207ENST00000460162 TBC1D10BQ4KMP7 808 aaPredicted RBP29.06■■■□□ 2.24
PTPN4-207ENST00000460162 PAXIP1Q6ZW49 1069 aaPredicted RBP29.06■■■□□ 2.24
PTPN4-207ENST00000460162 CTCFP49711 727 aaPredicted RBP29.05■■■□□ 2.24
PTPN4-207ENST00000460162 CASP7P55210 303 aa29.05■■■□□ 2.24
PTPN4-207ENST00000460162 SPINK5Q9NQ38 1064 aaPredicted RBP29.05■■■□□ 2.24
PTPN4-207ENST00000460162 ZNF646O15015 1829 aaPredicted RBP29.05■■■□□ 2.24
PTPN4-207ENST00000460162 SAPCD2Q86UD0 394 aa29.04■■■□□ 2.24
PTPN4-207ENST00000460162 HHIPL1Q96JK4 782 aa29.04■■■□□ 2.24
PTPN4-207ENST00000460162 PRDM10Q9NQV6 1147 aa29.04■■■□□ 2.24
PTPN4-207ENST00000460162 MINPP1Q9UNW1 487 aa29.04■■■□□ 2.24
PTPN4-207ENST00000460162 EGFRP00533 1210 aa29.03■■■□□ 2.24
PTPN4-207ENST00000460162 IGHMBP2P38935 993 aaKnown RBP29.03■■■□□ 2.24
PTPN4-207ENST00000460162 KIF4BQ2VIQ3 1234 aa29.03■■■□□ 2.24
PTPN4-207ENST00000460162 CYP4F22Q6NT55 531 aa29.03■■■□□ 2.24
PTPN4-207ENST00000460162 PODNQ7Z5L7 613 aa29.03■■■□□ 2.24
PTPN4-207ENST00000460162 AGBL3Q8NEM8 1001 aa29.03■■■□□ 2.24
PTPN4-207ENST00000460162 FAM161AQ3B820 660 aa29.02■■■□□ 2.24
PTPN4-207ENST00000460162 RSBN1LQ6PCB5 846 aaPredicted RBP29.02■■■□□ 2.24
PTPN4-207ENST00000460162 A0A1B0GUL6 1792 aa29.02■■■□□ 2.24
PTPN4-207ENST00000460162 POLR2AP24928 1970 aaKnown RBP29.01■■■□□ 2.23
PTPN4-207ENST00000460162 ITGA6P23229 1130 aa29.01■■■□□ 2.23
PTPN4-207ENST00000460162 CCT4P50991 539 aaKnown RBP29.01■■■□□ 2.23
PTPN4-207ENST00000460162 ZNF408Q9H9D4 720 aa29.01■■■□□ 2.23
PTPN4-207ENST00000460162 CSF1RP07333 972 aa29■■■□□ 2.23
PTPN4-207ENST00000460162 KRT26Q7Z3Y9 468 aa29■■■□□ 2.23
PTPN4-207ENST00000460162 ZNF280AP59817 542 aaPredicted RBP28.99■■■□□ 2.23
PTPN4-207ENST00000460162 GRM1Q13255 1194 aa28.99■■■□□ 2.23
PTPN4-207ENST00000460162 USP48Q86UV5 1035 aa28.99■■■□□ 2.23
PTPN4-207ENST00000460162 DCPSQ96C86 337 aaKnown RBP28.99■■■□□ 2.23
PTPN4-207ENST00000460162 RBM26Q5T8P6 1007 aaKnown RBP28.98■■■□□ 2.23
PTPN4-207ENST00000460162 LEMD3Q9Y2U8 911 aa28.98■■■□□ 2.23
PTPN4-207ENST00000460162 ZNF521Q96K83 1311 aa28.97■■■□□ 2.23
PTPN4-207ENST00000460162 USP17L3A6NCW0 530 aa28.97■■■□□ 2.23
PTPN4-207ENST00000460162 USP17L4A6NCW7 530 aa28.97■■■□□ 2.23
PTPN4-207ENST00000460162 F6X3S4 739 aa28.97■■■□□ 2.23
PTPN4-207ENST00000460162 BEND3Q5T5X7 828 aa28.97■■■□□ 2.23
PTPN4-207ENST00000460162 USP17L1Q7RTZ2 530 aa28.97■■■□□ 2.23
PTPN4-207ENST00000460162 MPHOSPH8Q99549 860 aa28.97■■■□□ 2.23
PTPN4-207ENST00000460162 ANKRD2Q9GZV1 360 aa28.97■■■□□ 2.23
PTPN4-207ENST00000460162 GGA3Q9NZ52 723 aa28.97■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms