RNA–Protein interactions for RNA: ENST00000457035.5

ATG4A-206, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 939 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-206ENST00000457035 LMBR1LQ6UX01 489 aa12.65□□□□□ -0.38
ATG4A-206ENST00000457035 ANKRD44Q8N8A2 993 aa12.65□□□□□ -0.38
ATG4A-206ENST00000457035 MEIS3Q99687 375 aa12.65□□□□□ -0.38
ATG4A-206ENST00000457035 SNED1Q8TER0 1413 aa12.64□□□□□ -0.39
ATG4A-206ENST00000457035 ITGA6P23229 1130 aa12.64□□□□□ -0.39
ATG4A-206ENST00000457035 PRELPP51888 382 aa12.64□□□□□ -0.39
ATG4A-206ENST00000457035 TMC4Q7Z404 712 aa12.64□□□□□ -0.39
ATG4A-206ENST00000457035 PANK1Q8TE04 598 aa12.64□□□□□ -0.39
ATG4A-206ENST00000457035 BICC1Q9H694 974 aaKnown RBP12.64□□□□□ -0.39
ATG4A-206ENST00000457035 CEP350Q5VT06 3117 aa12.64□□□□□ -0.39
ATG4A-206ENST00000457035 WDR90Q96KV7 1748 aa12.64□□□□□ -0.39
ATG4A-206ENST00000457035 DICER1Q9UPY3 1922 aaKnown RBP12.64□□□□□ -0.39
ATG4A-206ENST00000457035 TIAM2Q8IVF5 1701 aa12.63□□□□□ -0.39
ATG4A-206ENST00000457035 ZBTB7BO15156 539 aaPredicted RBP12.63□□□□□ -0.39
ATG4A-206ENST00000457035 UBTFL1P0CB47 393 aaPredicted RBP12.63□□□□□ -0.39
ATG4A-206ENST00000457035 MS4A1P11836 297 aa12.63□□□□□ -0.39
ATG4A-206ENST00000457035 FAM161AQ3B820 660 aa12.63□□□□□ -0.39
ATG4A-206ENST00000457035 GRIPAP1Q4V328 841 aa12.63□□□□□ -0.39
ATG4A-206ENST00000457035 CCDC93Q567U6 631 aa12.63□□□□□ -0.39
ATG4A-206ENST00000457035 FTSJ3Q8IY81 847 aaKnown RBP12.63□□□□□ -0.39
ATG4A-206ENST00000457035 RTKN2Q8IZC4 609 aa12.63□□□□□ -0.39
ATG4A-206ENST00000457035 PLCD3Q8N3E9 789 aa12.63□□□□□ -0.39
ATG4A-206ENST00000457035 CDC5LQ99459 802 aaKnown RBP12.63□□□□□ -0.39
ATG4A-206ENST00000457035 LTBP3Q9NS15 1303 aa12.62□□□□□ -0.39
ATG4A-206ENST00000457035 SPEF2Q9C093 1822 aa12.62□□□□□ -0.39
ATG4A-206ENST00000457035 ANKRD18BA2A2Z9 1011 aa12.62□□□□□ -0.39
ATG4A-206ENST00000457035 GNAI3P08754 354 aa12.62□□□□□ -0.39
ATG4A-206ENST00000457035 RASSF7Q02833 373 aa12.62□□□□□ -0.39
ATG4A-206ENST00000457035 IFIT5Q13325 482 aaKnown RBP12.62□□□□□ -0.39
ATG4A-206ENST00000457035 ANKRD18AQ8IVF6 992 aa12.62□□□□□ -0.39
ATG4A-206ENST00000457035 BSDC1Q9NW68 430 aaPredicted RBP12.62□□□□□ -0.39
ATG4A-206ENST00000457035 HDAC5Q9UQL6 1122 aa12.62□□□□□ -0.39
ATG4A-206ENST00000457035 FKBP4Q02790 459 aaKnown RBP eCLIP12.61□□□□□ -0.39
ATG4A-206ENST00000457035 PDE3AQ14432 1141 aa12.61□□□□□ -0.39
ATG4A-206ENST00000457035 CCDC57Q2TAC2 916 aa12.61□□□□□ -0.39
ATG4A-206ENST00000457035 C20orf194Q5TEA3 1177 aa12.61□□□□□ -0.39
ATG4A-206ENST00000457035 C9orf131Q5VYM1 1079 aa12.61□□□□□ -0.39
ATG4A-206ENST00000457035 ITPRIPQ8IWB1 547 aa12.61□□□□□ -0.39
ATG4A-206ENST00000457035 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.61□□□□□ -0.39
ATG4A-206ENST00000457035 PSMD1Q99460 953 aa12.61□□□□□ -0.39
ATG4A-206ENST00000457035 TAOK3Q9H2K8 898 aa12.61□□□□□ -0.39
ATG4A-206ENST00000457035 NMRK2Q9NPI5 230 aa12.61□□□□□ -0.39
ATG4A-206ENST00000457035 CHMP3Q9Y3E7 222 aa12.61□□□□□ -0.39
ATG4A-206ENST00000457035 LRRFIP2Q9Y608 721 aaKnown RBP12.61□□□□□ -0.39
ATG4A-206ENST00000457035 LRRC37AA6NMS7 1700 aa12.61□□□□□ -0.39
ATG4A-206ENST00000457035 LMNB1P20700 586 aa12.6□□□□□ -0.39
ATG4A-206ENST00000457035 IGHMBP2P38935 993 aaKnown RBP12.6□□□□□ -0.39
ATG4A-206ENST00000457035 MPNDQ8N594 471 aa12.6□□□□□ -0.39
ATG4A-206ENST00000457035 ZNF594Q96JF6 807 aaPredicted RBP12.6□□□□□ -0.39
ATG4A-206ENST00000457035 RTFDC1Q9BY42 306 aaPredicted RBP12.6□□□□□ -0.39
ATG4A-206ENST00000457035 TMX4Q9H1E5 349 aaPredicted RBP12.6□□□□□ -0.39
ATG4A-206ENST00000457035 MINPP1Q9UNW1 487 aa12.6□□□□□ -0.39
ATG4A-206ENST00000457035 GABBR2O75899 941 aa12.59□□□□□ -0.39
ATG4A-206ENST00000457035 GNAI2P04899 355 aa12.59□□□□□ -0.39
ATG4A-206ENST00000457035 RFX5P48382 616 aaPredicted RBP12.59□□□□□ -0.39
ATG4A-206ENST00000457035 GPSM2P81274 684 aa12.59□□□□□ -0.39
ATG4A-206ENST00000457035 MVPQ14764 893 aaKnown RBP12.59□□□□□ -0.39
ATG4A-206ENST00000457035 ZNF277Q9NRM2 450 aaPredicted RBP12.59□□□□□ -0.39
ATG4A-206ENST00000457035 PODXL2Q9NZ53 605 aa12.59□□□□□ -0.39
ATG4A-206ENST00000457035 RNF181Q9P0P0 153 aa12.59□□□□□ -0.39
ATG4A-206ENST00000457035 POLLQ9UGP5 575 aa12.59□□□□□ -0.39
ATG4A-206ENST00000457035 NSFL1CQ9UNZ2 370 aaKnown RBP12.59□□□□□ -0.39
ATG4A-206ENST00000457035 COG6Q9Y2V7 657 aa12.59□□□□□ -0.39
ATG4A-206ENST00000457035 TOMM70O94826 608 aa12.58□□□□□ -0.4
ATG4A-206ENST00000457035 RRP1P56182 461 aaKnown RBP12.58□□□□□ -0.4
ATG4A-206ENST00000457035 MTX1Q13505 466 aa12.58□□□□□ -0.4
ATG4A-206ENST00000457035 LTBP1Q14766 1721 aa12.58□□□□□ -0.4
ATG4A-206ENST00000457035 DPP8Q6V1X1 898 aaPredicted RBP12.58□□□□□ -0.4
ATG4A-206ENST00000457035 MPHOSPH8Q99549 860 aa12.58□□□□□ -0.4
ATG4A-206ENST00000457035 WTIPA6NIX2 430 aaPredicted RBP12.57□□□□□ -0.4
ATG4A-206ENST00000457035 CLCN6P51797 869 aa12.57□□□□□ -0.4
ATG4A-206ENST00000457035 PTPN12Q05209 780 aaKnown RBP12.57□□□□□ -0.4
ATG4A-206ENST00000457035 LDHAL6AQ6ZMR3 332 aa12.57□□□□□ -0.4
ATG4A-206ENST00000457035 C16orf71Q8IYS4 520 aaPredicted RBP12.57□□□□□ -0.4
ATG4A-206ENST00000457035 KLHDC4Q8TBB5 520 aa12.57□□□□□ -0.4
ATG4A-206ENST00000457035 TBC1D16Q8TBP0 767 aa12.57□□□□□ -0.4
ATG4A-206ENST00000457035 PUS3Q9BZE2 481 aaKnown RBP12.57□□□□□ -0.4
ATG4A-206ENST00000457035 VPS33BQ9H267 617 aa12.57□□□□□ -0.4
ATG4A-206ENST00000457035 DDX19BQ9UMR2 479 aa12.57□□□□□ -0.4
ATG4A-206ENST00000457035 RIPOR2Q9Y4F9 1068 aa12.57□□□□□ -0.4
ATG4A-206ENST00000457035 DUOX1Q9NRD9 1551 aa12.56□□□□□ -0.4
ATG4A-206ENST00000457035 IARSP41252 1262 aaKnown RBP12.56□□□□□ -0.4
ATG4A-206ENST00000457035 APLP1P51693 650 aa12.56□□□□□ -0.4
ATG4A-206ENST00000457035 ATP8B2P98198 1209 aa12.56□□□□□ -0.4
ATG4A-206ENST00000457035 CHRNDQ07001 517 aa12.56□□□□□ -0.4
ATG4A-206ENST00000457035 IFFO2Q5TF58 517 aa12.56□□□□□ -0.4
ATG4A-206ENST00000457035 ZNF579Q8NAF0 562 aaKnown RBP12.56□□□□□ -0.4
ATG4A-206ENST00000457035 SUPT20HQ8NEM7 779 aa12.56□□□□□ -0.4
ATG4A-206ENST00000457035 ZBTB40Q9NUA8 1239 aa12.56□□□□□ -0.4
ATG4A-206ENST00000457035 ANKIB1Q9P2G1 1089 aa12.56□□□□□ -0.4
ATG4A-206ENST00000457035 XDHP47989 1333 aa12.56□□□□□ -0.4
ATG4A-206ENST00000457035 PNMA6EA0A0J9YXQ4 647 aa12.55□□□□□ -0.4
ATG4A-206ENST00000457035 LRRC24Q50LG9 513 aa12.55□□□□□ -0.4
ATG4A-206ENST00000457035 TAF7LQ5H9L4 462 aa12.55□□□□□ -0.4
ATG4A-206ENST00000457035 ANKRD2Q9GZV1 360 aa12.55□□□□□ -0.4
ATG4A-206ENST00000457035 C1orf115Q9H7X2 142 aa12.55□□□□□ -0.4
ATG4A-206ENST00000457035 ZBTB47Q9UFB7 747 aaPredicted RBP12.55□□□□□ -0.4
ATG4A-206ENST00000457035 GGA1Q9UJY5 639 aa12.55□□□□□ -0.4
ATG4A-206ENST00000457035 A0A1B0GUL6 1792 aa12.55□□□□□ -0.4
ATG4A-206ENST00000457035 KDM2BQ8NHM5 1336 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms