RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 GPRC5DQ9NZD1 345 aa26.98■■□□□ 1.91
HMGB3-205ENST00000455596 PSME4Q14997 1843 aa26.97■■□□□ 1.91
HMGB3-205ENST00000455596 ZC3H12CQ9C0D7 883 aaKnown RBP26.97■■□□□ 1.91
HMGB3-205ENST00000455596 XDHP47989 1333 aa26.96■■□□□ 1.91
HMGB3-205ENST00000455596 PASKQ96RG2 1323 aa26.96■■□□□ 1.91
HMGB3-205ENST00000455596 GMPSP49915 693 aaPredicted RBP26.96■■□□□ 1.91
HMGB3-205ENST00000455596 USP50Q70EL3 339 aaPredicted RBP26.96■■□□□ 1.91
HMGB3-205ENST00000455596 GPR101Q96P66 508 aaPredicted RBP26.96■■□□□ 1.91
HMGB3-205ENST00000455596 BCL2L13Q9BXK5 485 aa26.96■■□□□ 1.91
HMGB3-205ENST00000455596 BSDC1Q9NW68 430 aaPredicted RBP26.96■■□□□ 1.91
HMGB3-205ENST00000455596 SCN9AQ15858 1988 aa26.96■■□□□ 1.91
HMGB3-205ENST00000455596 ECE2O60344 883 aa26.95■■□□□ 1.9
HMGB3-205ENST00000455596 ADARB2Q9NS39 739 aaKnown RBP26.95■■□□□ 1.9
HMGB3-205ENST00000455596 ITGBL1O95965 494 aaPredicted RBP26.94■■□□□ 1.9
HMGB3-205ENST00000455596 CSF1RP07333 972 aa26.94■■□□□ 1.9
HMGB3-205ENST00000455596 IGHMBP2P38935 993 aaKnown RBP26.94■■□□□ 1.9
HMGB3-205ENST00000455596 DOK7Q18PE1 504 aa26.94■■□□□ 1.9
HMGB3-205ENST00000455596 SLC4A10Q6U841 1118 aa26.94■■□□□ 1.9
HMGB3-205ENST00000455596 TRPM7Q96QT4 1865 aa26.93■■□□□ 1.9
HMGB3-205ENST00000455596 G3V3G9 751 aa26.93■■□□□ 1.9
HMGB3-205ENST00000455596 ITGA6P23229 1130 aa26.93■■□□□ 1.9
HMGB3-205ENST00000455596 ATP2B4P23634 1241 aa26.93■■□□□ 1.9
HMGB3-205ENST00000455596 FAM161AQ3B820 660 aa26.93■■□□□ 1.9
HMGB3-205ENST00000455596 DCAF8Q5TAQ9 597 aa26.93■■□□□ 1.9
HMGB3-205ENST00000455596 MAP1SQ66K74 1059 aaPredicted RBP26.93■■□□□ 1.9
HMGB3-205ENST00000455596 CNTROBQ8N137 903 aa26.93■■□□□ 1.9
HMGB3-205ENST00000455596 CDCA7LQ96GN5 454 aa26.93■■□□□ 1.9
HMGB3-205ENST00000455596 CREBZFQ9NS37 354 aa26.93■■□□□ 1.9
HMGB3-205ENST00000455596 A0A1B0GUL6 1792 aa26.92■■□□□ 1.9
HMGB3-205ENST00000455596 ALDH1L1O75891 902 aa26.92■■□□□ 1.9
HMGB3-205ENST00000455596 MRPL50Q8N5N7 158 aaKnown RBP26.92■■□□□ 1.9
HMGB3-205ENST00000455596 MINPP1Q9UNW1 487 aa26.92■■□□□ 1.9
HMGB3-205ENST00000455596 PSMD14O00487 310 aa26.91■■□□□ 1.9
HMGB3-205ENST00000455596 SRCIN1Q9C0H9 1055 aa26.91■■□□□ 1.9
HMGB3-205ENST00000455596 GRM8O00222 908 aa26.9■■□□□ 1.9
HMGB3-205ENST00000455596 MPHOSPH8Q99549 860 aa26.9■■□□□ 1.9
HMGB3-205ENST00000455596 C9orf78Q9NZ63 289 aaPredicted RBP26.9■■□□□ 1.9
HMGB3-205ENST00000455596 ANKRD18BA2A2Z9 1011 aa26.89■■□□□ 1.9
HMGB3-205ENST00000455596 FOXO4P98177 505 aa26.89■■□□□ 1.9
HMGB3-205ENST00000455596 TRMT2AQ8IZ69 625 aaKnown RBP26.89■■□□□ 1.9
HMGB3-205ENST00000455596 CNOT7Q9UIV1 285 aaKnown RBP26.89■■□□□ 1.9
HMGB3-205ENST00000455596 PTPRCP08575 1304 aa26.89■■□□□ 1.89
HMGB3-205ENST00000455596 JMYQ8N9B5 988 aa26.88■■□□□ 1.89
HMGB3-205ENST00000455596 SSH1Q8WYL5 1049 aa26.88■■□□□ 1.89
HMGB3-205ENST00000455596 ZBTB12Q9Y330 459 aaPredicted RBP26.88■■□□□ 1.89
HMGB3-205ENST00000455596 H7C1D1 291 aa26.87■■□□□ 1.89
HMGB3-205ENST00000455596 CCT4P50991 539 aaKnown RBP26.87■■□□□ 1.89
HMGB3-205ENST00000455596 DPF2Q92785 391 aa26.87■■□□□ 1.89
HMGB3-205ENST00000455596 KCNQ5Q9NR82 932 aa26.87■■□□□ 1.89
HMGB3-205ENST00000455596 CHMP3Q9Y3E7 222 aa26.87■■□□□ 1.89
HMGB3-205ENST00000455596 MED23Q9ULK4 1368 aa26.86■■□□□ 1.89
HMGB3-205ENST00000455596 TMEM88BA6NKF7 163 aa26.86■■□□□ 1.89
HMGB3-205ENST00000455596 RPS12P25398 132 aaKnown RBP26.86■■□□□ 1.89
HMGB3-205ENST00000455596 ALDH1L2Q3SY69 923 aa26.86■■□□□ 1.89
HMGB3-205ENST00000455596 DIEXFQ68CQ4 756 aaKnown RBP26.86■■□□□ 1.89
HMGB3-205ENST00000455596 MICALL2Q8IY33 904 aa26.86■■□□□ 1.89
HMGB3-205ENST00000455596 IFIT5Q13325 482 aaKnown RBP26.85■■□□□ 1.89
HMGB3-205ENST00000455596 ANKRD2Q9GZV1 360 aa26.85■■□□□ 1.89
HMGB3-205ENST00000455596 LMBR1LQ6UX01 489 aa26.84■■□□□ 1.89
HMGB3-205ENST00000455596 LEMD3Q9Y2U8 911 aa26.84■■□□□ 1.89
HMGB3-205ENST00000455596 POLR2AP24928 1970 aaKnown RBP26.84■■□□□ 1.89
HMGB3-205ENST00000455596 ZNF646O15015 1829 aaPredicted RBP26.83■■□□□ 1.89
HMGB3-205ENST00000455596 SHTN1A0MZ66 631 aa26.83■■□□□ 1.89
HMGB3-205ENST00000455596 WTIPA6NIX2 430 aaPredicted RBP26.83■■□□□ 1.89
HMGB3-205ENST00000455596 VIL1P09327 827 aaKnown RBP26.83■■□□□ 1.89
HMGB3-205ENST00000455596 CT47B1P0C2W7 299 aaPredicted RBP26.83■■□□□ 1.89
HMGB3-205ENST00000455596 EPHA10Q5JZY3 1008 aa26.83■■□□□ 1.89
HMGB3-205ENST00000455596 PODNQ7Z5L7 613 aa26.82■■□□□ 1.88
HMGB3-205ENST00000455596 TRPM4Q8TD43 1214 aa26.82■■□□□ 1.88
HMGB3-205ENST00000455596 ZC3H15Q8WU90 426 aaKnown RBP26.82■■□□□ 1.88
HMGB3-205ENST00000455596 SMC4Q9NTJ3 1288 aa26.82■■□□□ 1.88
HMGB3-205ENST00000455596 HIRAP54198 1017 aaPredicted RBP26.81■■□□□ 1.88
HMGB3-205ENST00000455596 CHRNDQ07001 517 aa26.81■■□□□ 1.88
HMGB3-205ENST00000455596 CCDC57Q2TAC2 916 aa26.81■■□□□ 1.88
HMGB3-205ENST00000455596 MIER1Q8N108 512 aa26.81■■□□□ 1.88
HMGB3-205ENST00000455596 MKRN1Q9UHC7 482 aaKnown RBP26.81■■□□□ 1.88
HMGB3-205ENST00000455596 PGAP2Q9UHJ9 254 aa26.81■■□□□ 1.88
HMGB3-205ENST00000455596 ZNF804BA4D1E1 1349 aa26.81■■□□□ 1.88
HMGB3-205ENST00000455596 UTYO14607 1347 aa26.8■■□□□ 1.88
HMGB3-205ENST00000455596 ZNF609O15014 1411 aa26.8■■□□□ 1.88
HMGB3-205ENST00000455596 NBPF7P0C2Y1 421 aaPredicted RBP26.79■■□□□ 1.88
HMGB3-205ENST00000455596 TAF7LQ5H9L4 462 aa26.79■■□□□ 1.88
HMGB3-205ENST00000455596 SAMD7Q7Z3H4 446 aa26.79■■□□□ 1.88
HMGB3-205ENST00000455596 SUCLG2Q96I99 432 aa26.79■■□□□ 1.88
HMGB3-205ENST00000455596 CNTNAP1P78357 1384 aa26.79■■□□□ 1.88
HMGB3-205ENST00000455596 KCNJ4P48050 445 aa26.78■■□□□ 1.88
HMGB3-205ENST00000455596 RSBN1LQ6PCB5 846 aaPredicted RBP26.78■■□□□ 1.88
HMGB3-205ENST00000455596 AGBL3Q8NEM8 1001 aa26.78■■□□□ 1.88
HMGB3-205ENST00000455596 COA1Q9GZY4 146 aa26.78■■□□□ 1.88
HMGB3-205ENST00000455596 USP17L3A6NCW0 530 aa26.77■■□□□ 1.88
HMGB3-205ENST00000455596 USP17L4A6NCW7 530 aa26.77■■□□□ 1.88
HMGB3-205ENST00000455596 FMR1Q06787 632 aaKnown RBP eCLIP26.77■■□□□ 1.88
HMGB3-205ENST00000455596 TBC1D10BQ4KMP7 808 aaPredicted RBP26.77■■□□□ 1.88
HMGB3-205ENST00000455596 USP17L1Q7RTZ2 530 aa26.77■■□□□ 1.88
HMGB3-205ENST00000455596 TRAF5O00463 557 aa26.76■■□□□ 1.87
HMGB3-205ENST00000455596 TXNRD3Q86VQ6 643 aa26.76■■□□□ 1.87
HMGB3-205ENST00000455596 KAZALD1Q96I82 304 aa26.76■■□□□ 1.87
HMGB3-205ENST00000455596 ZNF594Q96JF6 807 aaPredicted RBP26.76■■□□□ 1.87
HMGB3-205ENST00000455596 RBM26Q5T8P6 1007 aaKnown RBP26.75■■□□□ 1.87
HMGB3-205ENST00000455596 LDHAL6AQ6ZMR3 332 aa26.75■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms