RNA–Protein interactions for RNA: ENST00000452447.1

CHD3-206, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-206ENST00000452447 TTLL11Q8NHH1 800 aa16.45■□□□□ 0.22
CHD3-206ENST00000452447 SPINK5Q9NQ38 1064 aaPredicted RBP16.45■□□□□ 0.22
CHD3-206ENST00000452447 GGA1Q9UJY5 639 aa16.45■□□□□ 0.22
CHD3-206ENST00000452447 GCKRQ14397 625 aa16.44■□□□□ 0.22
CHD3-206ENST00000452447 GPR101Q96P66 508 aaPredicted RBP16.44■□□□□ 0.22
CHD3-206ENST00000452447 H7C1D1 291 aa16.43■□□□□ 0.22
CHD3-206ENST00000452447 H7C1W4 665 aa16.43■□□□□ 0.22
CHD3-206ENST00000452447 ECE2O60344 883 aa16.43■□□□□ 0.22
CHD3-206ENST00000452447 DOK7Q18PE1 504 aa16.43■□□□□ 0.22
CHD3-206ENST00000452447 LINS1Q8NG48 757 aa16.43■□□□□ 0.22
CHD3-206ENST00000452447 CNOT7Q9UIV1 285 aaKnown RBP16.43■□□□□ 0.22
CHD3-206ENST00000452447 XDHP47989 1333 aa16.43■□□□□ 0.22
CHD3-206ENST00000452447 PSMD14O00487 310 aa16.43■□□□□ 0.22
CHD3-206ENST00000452447 GREM2Q9H772 168 aa16.43■□□□□ 0.22
CHD3-206ENST00000452447 ZBTB12Q9Y330 459 aaPredicted RBP16.43■□□□□ 0.22
CHD3-206ENST00000452447 CNTNAP1P78357 1384 aa16.42■□□□□ 0.22
CHD3-206ENST00000452447 IFFO2Q5TF58 517 aa16.42■□□□□ 0.22
CHD3-206ENST00000452447 DPF2Q92785 391 aa16.42■□□□□ 0.22
CHD3-206ENST00000452447 ABT1Q9ULW3 272 aaKnown RBP16.42■□□□□ 0.22
CHD3-206ENST00000452447 TRPM7Q96QT4 1865 aa16.42■□□□□ 0.22
CHD3-206ENST00000452447 SPEF2Q9C093 1822 aa16.41■□□□□ 0.22
CHD3-206ENST00000452447 HSPA1AP0DMV8 641 aaKnown RBP16.41■□□□□ 0.22
CHD3-206ENST00000452447 HSPA1BP0DMV9 641 aaKnown RBP16.41■□□□□ 0.22
CHD3-206ENST00000452447 MICALL2Q8IY33 904 aa16.41■□□□□ 0.22
CHD3-206ENST00000452447 BSDC1Q9NW68 430 aaPredicted RBP16.41■□□□□ 0.22
CHD3-206ENST00000452447 RTL9Q8NET4 1388 aa16.4■□□□□ 0.22
CHD3-206ENST00000452447 ATP2B4P23634 1241 aa16.4■□□□□ 0.22
CHD3-206ENST00000452447 RPS12P25398 132 aaKnown RBP16.4■□□□□ 0.22
CHD3-206ENST00000452447 IGHMBP2P38935 993 aaKnown RBP16.4■□□□□ 0.22
CHD3-206ENST00000452447 DEFB115Q30KQ5 88 aa16.4■□□□□ 0.22
CHD3-206ENST00000452447 ZC3H15Q8WU90 426 aaKnown RBP16.4■□□□□ 0.22
CHD3-206ENST00000452447 PLA2G12BQ9BX93 195 aa16.4■□□□□ 0.22
CHD3-206ENST00000452447 KCNQ5Q9NR82 932 aa16.4■□□□□ 0.22
CHD3-206ENST00000452447 SCN9AQ15858 1988 aa16.39■□□□□ 0.21
CHD3-206ENST00000452447 F6X3S4 739 aa16.39■□□□□ 0.21
CHD3-206ENST00000452447 TRAF5O00463 557 aa16.39■□□□□ 0.21
CHD3-206ENST00000452447 TRPM4Q8TD43 1214 aa16.39■□□□□ 0.21
CHD3-206ENST00000452447 MINPP1Q9UNW1 487 aa16.39■□□□□ 0.21
CHD3-206ENST00000452447 POLR2AP24928 1970 aaKnown RBP16.39■□□□□ 0.21
CHD3-206ENST00000452447 SHTN1A0MZ66 631 aa16.38■□□□□ 0.21
CHD3-206ENST00000452447 ITGA6P23229 1130 aa16.38■□□□□ 0.21
CHD3-206ENST00000452447 VEGFBP49765 207 aa16.38■□□□□ 0.21
CHD3-206ENST00000452447 HIRAP54198 1017 aaPredicted RBP16.38■□□□□ 0.21
CHD3-206ENST00000452447 FMR1Q06787 632 aaKnown RBP eCLIP16.38■□□□□ 0.215e-7■□□□□ 11.2
CHD3-206ENST00000452447 RASSF10A6NK89 507 aa16.38■□□□□ 0.21
CHD3-206ENST00000452447 CASP7P55210 303 aa16.38■□□□□ 0.21
CHD3-206ENST00000452447 SAMD7Q7Z3H4 446 aa16.38■□□□□ 0.21
CHD3-206ENST00000452447 MPHOSPH8Q99549 860 aa16.38■□□□□ 0.21
CHD3-206ENST00000452447 PGAP2Q9UHJ9 254 aa16.38■□□□□ 0.21
CHD3-206ENST00000452447 ZNF521Q96K83 1311 aa16.37■□□□□ 0.21
CHD3-206ENST00000452447 CSF1RP07333 972 aa16.37■□□□□ 0.21
CHD3-206ENST00000452447 VIL1P09327 827 aaKnown RBP16.37■□□□□ 0.21
CHD3-206ENST00000452447 FAM161AQ3B820 660 aa16.37■□□□□ 0.21
CHD3-206ENST00000452447 TBC1D10BQ4KMP7 808 aaPredicted RBP16.37■□□□□ 0.21
CHD3-206ENST00000452447 BEND3Q5T5X7 828 aa16.37■□□□□ 0.21
CHD3-206ENST00000452447 CDC37L1Q7L3B6 337 aa16.37■□□□□ 0.21
CHD3-206ENST00000452447 GLIS2Q9BZE0 524 aaPredicted RBP16.37■□□□□ 0.21
CHD3-206ENST00000452447 CCT4P50991 539 aaKnown RBP16.36■□□□□ 0.21
CHD3-206ENST00000452447 RBM26Q5T8P6 1007 aaKnown RBP16.36■□□□□ 0.21
CHD3-206ENST00000452447 CST9Q5W186 159 aa16.36■□□□□ 0.21
CHD3-206ENST00000452447 PAXIP1Q6ZW49 1069 aaPredicted RBP16.36■□□□□ 0.21
CHD3-206ENST00000452447 PODNQ7Z5L7 613 aa16.36■□□□□ 0.21
CHD3-206ENST00000452447 ANKRD18BA2A2Z9 1011 aa16.35■□□□□ 0.21
CHD3-206ENST00000452447 CELF2O95319 508 aaKnown RBP16.35■□□□□ 0.21
CHD3-206ENST00000452447 COL13A1Q5TAT6 717 aaPredicted RBP16.35■□□□□ 0.21
CHD3-206ENST00000452447 SLC4A10Q6U841 1118 aa16.35■□□□□ 0.21
CHD3-206ENST00000452447 ANKRD2Q9GZV1 360 aa16.35■□□□□ 0.21
CHD3-206ENST00000452447 C9orf78Q9NZ63 289 aaPredicted RBP16.35■□□□□ 0.21
CHD3-206ENST00000452447 CHMP3Q9Y3E7 222 aa16.35■□□□□ 0.21
CHD3-206ENST00000452447 PSME4Q14997 1843 aa16.34■□□□□ 0.21
CHD3-206ENST00000452447 E9PSI1 815 aa16.34■□□□□ 0.21
CHD3-206ENST00000452447 IFIT5Q13325 482 aaKnown RBP16.34■□□□□ 0.21
CHD3-206ENST00000452447 RSBN1LQ6PCB5 846 aaPredicted RBP16.34■□□□□ 0.21
CHD3-206ENST00000452447 AGBL3Q8NEM8 1001 aa16.34■□□□□ 0.21
CHD3-206ENST00000452447 ZNF408Q9H9D4 720 aa16.34■□□□□ 0.21
CHD3-206ENST00000452447 LEMD3Q9Y2U8 911 aa16.34■□□□□ 0.21
CHD3-206ENST00000452447 MED23Q9ULK4 1368 aa16.34■□□□□ 0.21
CHD3-206ENST00000452447 USP17L3A6NCW0 530 aa16.34■□□□□ 0.21
CHD3-206ENST00000452447 USP17L4A6NCW7 530 aa16.34■□□□□ 0.21
CHD3-206ENST00000452447 GRM8O00222 908 aa16.34■□□□□ 0.21
CHD3-206ENST00000452447 ECE1P42892 770 aa16.34■□□□□ 0.21
CHD3-206ENST00000452447 USP17L1Q7RTZ2 530 aa16.34■□□□□ 0.21
CHD3-206ENST00000452447 AIDAQ96BJ3 306 aa16.34■□□□□ 0.21
CHD3-206ENST00000452447 DCPSQ96C86 337 aaKnown RBP16.34■□□□□ 0.21
CHD3-206ENST00000452447 WDR33Q9C0J8 1336 aaKnown RBP16.34■□□□□ 0.21
CHD3-206ENST00000452447 WTIPA6NIX2 430 aaPredicted RBP16.33■□□□□ 0.2
CHD3-206ENST00000452447 KCNJ4P48050 445 aa16.33■□□□□ 0.2
CHD3-206ENST00000452447 GRM1Q13255 1194 aa16.33■□□□□ 0.2
CHD3-206ENST00000452447 KIF4BQ2VIQ3 1234 aa16.33■□□□□ 0.2
CHD3-206ENST00000452447 USP48Q86UV5 1035 aa16.33■□□□□ 0.2
CHD3-206ENST00000452447 SRCIN1Q9C0H9 1055 aa16.33■□□□□ 0.2
CHD3-206ENST00000452447 TLL2Q9Y6L7 1015 aa16.33■□□□□ 0.2
CHD3-206ENST00000452447 ZNF804BA4D1E1 1349 aa16.33■□□□□ 0.2
CHD3-206ENST00000452447 ALDH1L1O75891 902 aa16.32■□□□□ 0.2
CHD3-206ENST00000452447 EGFRP00533 1210 aa16.32■□□□□ 0.2
CHD3-206ENST00000452447 FOXO4P98177 505 aa16.32■□□□□ 0.2
CHD3-206ENST00000452447 KRT26Q7Z3Y9 468 aa16.32■□□□□ 0.2
CHD3-206ENST00000452447 USP17L8P0C7I0 530 aa16.31■□□□□ 0.2
CHD3-206ENST00000452447 MAP2K1Q02750 393 aaPredicted RBP16.31■□□□□ 0.2
CHD3-206ENST00000452447 CHRNDQ07001 517 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms