RNA–Protein interactions for RNA: ENST00000451859.5

RFX3-209, Transcript of regulatory factor X3, human

TSL 3

Gene RFX3, Length 740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-209	ENST00000451859	RNF123	Q5XPI4	1314 aa		11.2	□□□□□ -0.62
RFX3-209	ENST00000451859	FSTL1	Q12841	308 aa		11.2	□□□□□ -0.62
RFX3-209	ENST00000451859	TSPYL6	Q8N831	410 aa		11.2	□□□□□ -0.62
RFX3-209	ENST00000451859	FAM89A	Q96GI7	184 aa		11.2	□□□□□ -0.62
RFX3-209	ENST00000451859	LTBP1	Q14766	1721 aa		11.19	□□□□□ -0.62
RFX3-209	ENST00000451859	SLC10A5	Q5PT55	438 aa		11.19	□□□□□ -0.62
RFX3-209	ENST00000451859	WWC1	Q8IX03	1113 aa		11.19	□□□□□ -0.62
RFX3-209	ENST00000451859	FAM9B	Q8IZU0	186 aa		11.19	□□□□□ -0.62
RFX3-209	ENST00000451859	MYD88	Q99836	296 aa		11.19	□□□□□ -0.62
RFX3-209	ENST00000451859	TMX4	Q9H1E5	349 aa	Predicted RBP	11.19	□□□□□ -0.62
RFX3-209	ENST00000451859	EAPP	Q56P03	285 aa	Predicted RBP	11.18	□□□□□ -0.62
RFX3-209	ENST00000451859	VARS2	Q5ST30	1063 aa	Known RBP	11.18	□□□□□ -0.62
RFX3-209	ENST00000451859	CC2D2B	Q6DHV5	1058 aa		11.18	□□□□□ -0.62
RFX3-209	ENST00000451859	DDX46	Q7L014	1031 aa	Known RBP	11.18	□□□□□ -0.62
RFX3-209	ENST00000451859	LARGE2	Q8N3Y3	721 aa		11.18	□□□□□ -0.62
RFX3-209	ENST00000451859	JDP2	Q8WYK2	163 aa		11.18	□□□□□ -0.62
RFX3-209	ENST00000451859	PSMD1	Q99460	953 aa		11.18	□□□□□ -0.62
RFX3-209	ENST00000451859	ISCA1	Q9BUE6	129 aa		11.18	□□□□□ -0.62
RFX3-209	ENST00000451859	GJA3	Q9Y6H8	435 aa		11.18	□□□□□ -0.62
RFX3-209	ENST00000451859	PPIP5K2	O43314	1243 aa		11.17	□□□□□ -0.62
RFX3-209	ENST00000451859	AOC3	Q16853	763 aa		11.17	□□□□□ -0.62
RFX3-209	ENST00000451859	CCDC30	Q5VVM6	783 aa		11.17	□□□□□ -0.62
RFX3-209	ENST00000451859	JARID2	Q92833	1246 aa	Predicted RBP	11.17	□□□□□ -0.62
RFX3-209	ENST00000451859	ATP6V0A2	Q9Y487	856 aa		11.17	□□□□□ -0.62
RFX3-209	ENST00000451859	TRPM7	Q96QT4	1865 aa		11.17	□□□□□ -0.62
RFX3-209	ENST00000451859	DUOX1	Q9NRD9	1551 aa		11.16	□□□□□ -0.62
RFX3-209	ENST00000451859	IQCA1L	A6NCM1	817 aa		11.16	□□□□□ -0.62
RFX3-209	ENST00000451859	FZD9	O00144	591 aa		11.16	□□□□□ -0.62
RFX3-209	ENST00000451859	IRS4	O14654	1257 aa	Predicted RBP	11.16	□□□□□ -0.62
RFX3-209	ENST00000451859	DDX58	O95786	925 aa	Known RBP	11.16	□□□□□ -0.62
RFX3-209	ENST00000451859	EIF6	P56537	245 aa	Known RBP	11.16	□□□□□ -0.62
RFX3-209	ENST00000451859	GRAP	Q13588	217 aa		11.16	□□□□□ -0.62
RFX3-209	ENST00000451859	CCDC27	Q2M243	656 aa		11.16	□□□□□ -0.62
RFX3-209	ENST00000451859	TWISTNB	Q3B726	338 aa	Predicted RBP	11.16	□□□□□ -0.62
RFX3-209	ENST00000451859	TMEM92	Q6UXU6	159 aa		11.16	□□□□□ -0.62
RFX3-209	ENST00000451859	DPP8	Q6V1X1	898 aa	Predicted RBP	11.16	□□□□□ -0.62
RFX3-209	ENST00000451859	NIM1K	Q8IY84	436 aa		11.16	□□□□□ -0.62
RFX3-209	ENST00000451859	GRAPL	Q8TC17	118 aa	Predicted RBP	11.16	□□□□□ -0.62
RFX3-209	ENST00000451859	STK31	Q9BXU1	1019 aa		11.16	□□□□□ -0.62
RFX3-209	ENST00000451859	PCNT	O95613	3336 aa		11.16	□□□□□ -0.62
RFX3-209	ENST00000451859	POLR2A	P24928	1970 aa	Known RBP	11.16	□□□□□ -0.62
RFX3-209	ENST00000451859	ADAMTSL1	Q8N6G6	1762 aa		11.16	□□□□□ -0.62
RFX3-209	ENST00000451859	FANCI	Q9NVI1	1328 aa		11.15	□□□□□ -0.62
RFX3-209	ENST00000451859	MPND	Q8N594	471 aa		11.15	□□□□□ -0.62
RFX3-209	ENST00000451859	CELF1	Q92879	486 aa	Known RBP	11.15	□□□□□ -0.62
RFX3-209	ENST00000451859	CCDC85A	Q96PX6	553 aa	Predicted RBP	11.15	□□□□□ -0.62
RFX3-209	ENST00000451859	TAF1D	Q9H5J8	278 aa	Predicted RBP	11.15	□□□□□ -0.62
RFX3-209	ENST00000451859	HACL1	Q9UJ83	578 aa		11.15	□□□□□ -0.62
RFX3-209	ENST00000451859	MAP3K2	Q9Y2U5	619 aa		11.15	□□□□□ -0.62
RFX3-209	ENST00000451859	SCN9A	Q15858	1988 aa		11.14	□□□□□ -0.63
RFX3-209	ENST00000451859	BBOX1	O75936	387 aa		11.14	□□□□□ -0.63
RFX3-209	ENST00000451859	EPHX2	P34913	555 aa		11.14	□□□□□ -0.63
RFX3-209	ENST00000451859	GRIPAP1	Q4V328	841 aa		11.14	□□□□□ -0.63
RFX3-209	ENST00000451859	G2E3	Q7L622	706 aa		11.14	□□□□□ -0.63
RFX3-209	ENST00000451859	SP8	Q8IXZ3	490 aa		11.14	□□□□□ -0.63
RFX3-209	ENST00000451859	GPC2	Q8N158	579 aa		11.14	□□□□□ -0.63
RFX3-209	ENST00000451859	CWC25	Q9NXE8	425 aa	Predicted RBP	11.14	□□□□□ -0.63
RFX3-209	ENST00000451859	IL16	Q14005	1332 aa		11.13	□□□□□ -0.63
RFX3-209	ENST00000451859	PI4KAP2	A4QPH2	592 aa		11.13	□□□□□ -0.63
RFX3-209	ENST00000451859	LMOD1	P29536	600 aa	Predicted RBP	11.13	□□□□□ -0.63
RFX3-209	ENST00000451859	IFNLR1	Q8IU57	520 aa	Predicted RBP	11.13	□□□□□ -0.63
RFX3-209	ENST00000451859	ZNF687	Q8N1G0	1237 aa		11.13	□□□□□ -0.63
RFX3-209	ENST00000451859	DNAJC5G	Q8N7S2	189 aa		11.13	□□□□□ -0.63
RFX3-209	ENST00000451859	PI4KAP1	Q8N8J0	262 aa		11.13	□□□□□ -0.63
RFX3-209	ENST00000451859	SUPT20H	Q8NEM7	779 aa		11.13	□□□□□ -0.63
RFX3-209	ENST00000451859	METTL22	Q9BUU2	404 aa	Predicted RBP	11.13	□□□□□ -0.63
RFX3-209	ENST00000451859	CHMP4A	Q9BY43	222 aa		11.13	□□□□□ -0.63
RFX3-209	ENST00000451859	PSME4	Q14997	1843 aa		11.13	□□□□□ -0.63
RFX3-209	ENST00000451859	RIMBP2	O15034	1052 aa		11.12	□□□□□ -0.63
RFX3-209	ENST00000451859	EXOSC9	Q06265	439 aa	Known RBP	11.12	□□□□□ -0.63
RFX3-209	ENST00000451859	TRIM28	Q13263	835 aa	Known RBP	11.12	□□□□□ -0.63
RFX3-209	ENST00000451859	SF3B3	Q15393	1217 aa	Known RBP	11.12	□□□□□ -0.63
RFX3-209	ENST00000451859	CWF19L2	Q2TBE0	894 aa	Known RBP	11.12	□□□□□ -0.63
RFX3-209	ENST00000451859	KSR2	Q6VAB6	950 aa		11.12	□□□□□ -0.63
RFX3-209	ENST00000451859	LDHD	Q86WU2	507 aa		11.12	□□□□□ -0.63
RFX3-209	ENST00000451859	EFCAB3	Q8N7B9	438 aa		11.12	□□□□□ -0.63
RFX3-209	ENST00000451859	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	11.12	□□□□□ -0.63
RFX3-209	ENST00000451859	CCDC191	Q8NCU4	936 aa		11.12	□□□□□ -0.63
RFX3-209	ENST00000451859	SPOCK2	Q92563	424 aa		11.12	□□□□□ -0.63
RFX3-209	ENST00000451859	KLRG1	Q96E93	195 aa		11.12	□□□□□ -0.63
RFX3-209	ENST00000451859	GPR101	Q96P66	508 aa	Predicted RBP	11.12	□□□□□ -0.63
RFX3-209	ENST00000451859	SEC31B	Q9NQW1	1179 aa		11.12	□□□□□ -0.63
RFX3-209	ENST00000451859	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.12	□□□□□ -0.63
RFX3-209	ENST00000451859	NSFL1C	Q9UNZ2	370 aa	Known RBP	11.12	□□□□□ -0.63
RFX3-209	ENST00000451859		A0A1B0GUL6	1792 aa		11.11	□□□□□ -0.63
RFX3-209	ENST00000451859	C6orf229	H3BNL8	230 aa		11.11	□□□□□ -0.63
RFX3-209	ENST00000451859	RAD17	O75943	681 aa		11.11	□□□□□ -0.63
RFX3-209	ENST00000451859	PCCA	P05165	728 aa	Predicted RBP	11.11	□□□□□ -0.63
RFX3-209	ENST00000451859	NEXN	Q0ZGT2	675 aa		11.11	□□□□□ -0.63
RFX3-209	ENST00000451859	FKBP5	Q13451	457 aa	Predicted RBP	11.11	□□□□□ -0.63
RFX3-209	ENST00000451859	MAP1S	Q66K74	1059 aa	Predicted RBP	11.11	□□□□□ -0.63
RFX3-209	ENST00000451859	GPR153	Q6NV75	609 aa		11.11	□□□□□ -0.63
RFX3-209	ENST00000451859	WDR63	Q8IWG1	891 aa		11.11	□□□□□ -0.63
RFX3-209	ENST00000451859	ZSWIM6	Q9HCJ5	1215 aa		11.11	□□□□□ -0.63
RFX3-209	ENST00000451859	PDE8A	O60658	829 aa		11.1	□□□□□ -0.63
RFX3-209	ENST00000451859	IGKV5-2	P06315	115 aa		11.1	□□□□□ -0.63
RFX3-209	ENST00000451859	EPS15	P42566	896 aa		11.1	□□□□□ -0.63
RFX3-209	ENST00000451859	SCNN1D	P51172	638 aa		11.1	□□□□□ -0.63
RFX3-209	ENST00000451859	GPSM2	P81274	684 aa		11.1	□□□□□ -0.63
RFX3-209	ENST00000451859	CXCL9	Q07325	125 aa		11.1	□□□□□ -0.63

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