RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 BRPF1P55201 1214 aaPredicted RBP17.15■□□□□ 0.34
HMGB3-204ENST00000448905 NOGQ13253 232 aa17.15■□□□□ 0.34
HMGB3-204ENST00000448905 TBC1D10BQ4KMP7 808 aaPredicted RBP17.15■□□□□ 0.34
HMGB3-204ENST00000448905 SAMD7Q7Z3H4 446 aa17.15■□□□□ 0.34
HMGB3-204ENST00000448905 KRT26Q7Z3Y9 468 aa17.15■□□□□ 0.34
HMGB3-204ENST00000448905 MYD88Q99836 296 aa17.15■□□□□ 0.34
HMGB3-204ENST00000448905 PRKRIP1Q9H875 184 aaPredicted RBP17.15■□□□□ 0.34
HMGB3-204ENST00000448905 PODXL2Q9NZ53 605 aa17.15■□□□□ 0.34
HMGB3-204ENST00000448905 TSKSQ9UJT2 592 aa17.15■□□□□ 0.34
HMGB3-204ENST00000448905 GGA1Q9UJY5 639 aa17.15■□□□□ 0.34
HMGB3-204ENST00000448905 HUNKP57058 714 aa17.14■□□□□ 0.33
HMGB3-204ENST00000448905 CCDC102AQ96A19 550 aa17.14■□□□□ 0.33
HMGB3-204ENST00000448905 PHAXQ9H814 394 aaKnown RBP17.14■□□□□ 0.33
HMGB3-204ENST00000448905 CWC25Q9NXE8 425 aaPredicted RBP17.14■□□□□ 0.33
HMGB3-204ENST00000448905 PCCAP05165 728 aaPredicted RBP17.13■□□□□ 0.33
HMGB3-204ENST00000448905 VIL1P09327 827 aaKnown RBP17.13■□□□□ 0.33
HMGB3-204ENST00000448905 UFL1O94874 794 aa17.12■□□□□ 0.33
HMGB3-204ENST00000448905 ANKRD18AQ8IVF6 992 aa17.12■□□□□ 0.33
HMGB3-204ENST00000448905 SULF1Q8IWU6 871 aa17.12■□□□□ 0.33
HMGB3-204ENST00000448905 METTL22Q9BUU2 404 aaPredicted RBP17.12■□□□□ 0.33
HMGB3-204ENST00000448905 SEC31BQ9NQW1 1179 aa17.12■□□□□ 0.33
HMGB3-204ENST00000448905 TAF1P21675 1872 aa17.12■□□□□ 0.33
HMGB3-204ENST00000448905 TRPM7Q96QT4 1865 aa17.12■□□□□ 0.33
HMGB3-204ENST00000448905 SHTN1A0MZ66 631 aa17.11■□□□□ 0.33
HMGB3-204ENST00000448905 CCDC85CA6NKD9 419 aa17.11■□□□□ 0.33
HMGB3-204ENST00000448905 NEXNQ0ZGT2 675 aa17.11■□□□□ 0.33
HMGB3-204ENST00000448905 GBA2Q9HCG7 927 aaPredicted RBP17.11■□□□□ 0.33
HMGB3-204ENST00000448905 KCNQ5Q9NR82 932 aa17.11■□□□□ 0.33
HMGB3-204ENST00000448905 RGMBQ6NW40 437 aa17.1■□□□□ 0.33
HMGB3-204ENST00000448905 C8orf58Q8NAV2 365 aa17.1■□□□□ 0.33
HMGB3-204ENST00000448905 AGBL3Q8NEM8 1001 aa17.1■□□□□ 0.33
HMGB3-204ENST00000448905 CDC5LQ99459 802 aaKnown RBP17.1■□□□□ 0.33
HMGB3-204ENST00000448905 STK31Q9BXU1 1019 aa17.1■□□□□ 0.33
HMGB3-204ENST00000448905 ATP2B4P23634 1241 aa17.09■□□□□ 0.33
HMGB3-204ENST00000448905 ZNF157P51786 506 aaPredicted RBP17.09■□□□□ 0.33
HMGB3-204ENST00000448905 KIF4BQ2VIQ3 1234 aa17.09■□□□□ 0.33
HMGB3-204ENST00000448905 DLK2Q6UY11 383 aa17.09■□□□□ 0.33
HMGB3-204ENST00000448905 PODNQ7Z5L7 613 aa17.09■□□□□ 0.33
HMGB3-204ENST00000448905 LAMB2P55268 1798 aa17.08■□□□□ 0.33
HMGB3-204ENST00000448905 XDHP47989 1333 aa17.08■□□□□ 0.32
HMGB3-204ENST00000448905 RSBN1LQ6PCB5 846 aaPredicted RBP17.08■□□□□ 0.32
HMGB3-204ENST00000448905 KSR2Q6VAB6 950 aa17.08■□□□□ 0.32
HMGB3-204ENST00000448905 CCDC85AQ96PX6 553 aaPredicted RBP17.08■□□□□ 0.32
HMGB3-204ENST00000448905 MAP3K2Q9Y2U5 619 aa17.08■□□□□ 0.32
HMGB3-204ENST00000448905 USP17L8P0C7I0 530 aa17.07■□□□□ 0.32
HMGB3-204ENST00000448905 FAM161AQ3B820 660 aa17.07■□□□□ 0.32
HMGB3-204ENST00000448905 REM2Q8IYK8 340 aaPredicted RBP17.07■□□□□ 0.32
HMGB3-204ENST00000448905 JARID2Q92833 1246 aaPredicted RBP17.07■□□□□ 0.32
HMGB3-204ENST00000448905 PI4KAP2A4QPH2 592 aa17.06■□□□□ 0.32
HMGB3-204ENST00000448905 USP17L3A6NCW0 530 aa17.06■□□□□ 0.32
HMGB3-204ENST00000448905 USP17L4A6NCW7 530 aa17.06■□□□□ 0.32
HMGB3-204ENST00000448905 ADM5C9JUS6 153 aa17.06■□□□□ 0.32
HMGB3-204ENST00000448905 EGFRP00533 1210 aa17.06■□□□□ 0.32
HMGB3-204ENST00000448905 SCARF1Q14162 830 aa17.06■□□□□ 0.32
HMGB3-204ENST00000448905 USP17L1Q7RTZ2 530 aa17.06■□□□□ 0.32
HMGB3-204ENST00000448905 OGFOD1Q8N543 542 aa17.06■□□□□ 0.32
HMGB3-204ENST00000448905 PI4KAP1Q8N8J0 262 aa17.06■□□□□ 0.32
HMGB3-204ENST00000448905 BSDC1Q9NW68 430 aaPredicted RBP17.06■□□□□ 0.32
HMGB3-204ENST00000448905 RTL9Q8NET4 1388 aa17.05■□□□□ 0.32
HMGB3-204ENST00000448905 ZNF280AP59817 542 aaPredicted RBP17.05■□□□□ 0.32
HMGB3-204ENST00000448905 GGA3Q9NZ52 723 aa17.05■□□□□ 0.32
HMGB3-204ENST00000448905 MMP14P50281 582 aa17.04■□□□□ 0.32
HMGB3-204ENST00000448905 CTSWP56202 376 aa17.04■□□□□ 0.32
HMGB3-204ENST00000448905 FKBP1BP68106 108 aa17.04■□□□□ 0.32
HMGB3-204ENST00000448905 KIF23Q02241 960 aaPredicted RBP17.04■□□□□ 0.32
HMGB3-204ENST00000448905 MLLT1Q03111 559 aaPredicted RBP17.04■□□□□ 0.32
HMGB3-204ENST00000448905 DGKZQ13574 1117 aa17.04■□□□□ 0.32
HMGB3-204ENST00000448905 ANGEL2Q5VTE6 544 aaKnown RBP17.04■□□□□ 0.32
HMGB3-204ENST00000448905 TTLL11Q8NHH1 800 aa17.04■□□□□ 0.32
HMGB3-204ENST00000448905 ZIC5Q96T25 663 aa17.04■□□□□ 0.32
HMGB3-204ENST00000448905 MYOZ2Q9NPC6 264 aa17.04■□□□□ 0.32
HMGB3-204ENST00000448905 SAGE1Q9NXZ1 904 aa17.04■□□□□ 0.32
HMGB3-204ENST00000448905 THSD7BQ9C0I4 1608 aa17.03■□□□□ 0.32
HMGB3-204ENST00000448905 ANKRD36CQ5JPF3 1778 aa17.03■□□□□ 0.32
HMGB3-204ENST00000448905 SLC4A2P04920 1241 aa17.03■□□□□ 0.32
HMGB3-204ENST00000448905 IGHMBP2P38935 993 aaKnown RBP17.03■□□□□ 0.32
HMGB3-204ENST00000448905 MCOLN1Q9GZU1 580 aa17.03■□□□□ 0.32
HMGB3-204ENST00000448905 MINPP1Q9UNW1 487 aa17.03■□□□□ 0.32
HMGB3-204ENST00000448905 CASP8AP2Q9UKL3 1982 aa17.02■□□□□ 0.32
HMGB3-204ENST00000448905 FAM155AB1AL88 458 aaPredicted RBP17.02■□□□□ 0.32
HMGB3-204ENST00000448905 CCDC27Q2M243 656 aa17.02■□□□□ 0.32
HMGB3-204ENST00000448905 TSPYL6Q8N831 410 aa17.02■□□□□ 0.32
HMGB3-204ENST00000448905 CDCA5Q96FF9 252 aa17.02■□□□□ 0.32
HMGB3-204ENST00000448905 LEMD3Q9Y2U8 911 aa17.02■□□□□ 0.32
HMGB3-204ENST00000448905 TRPA1O75762 1119 aa17.01■□□□□ 0.31
HMGB3-204ENST00000448905 IGKV5-2P06315 115 aa17.01■□□□□ 0.31
HMGB3-204ENST00000448905 RGS19P49795 217 aa17.01■□□□□ 0.31
HMGB3-204ENST00000448905 TWISTNBQ3B726 338 aaPredicted RBP17.01■□□□□ 0.31
HMGB3-204ENST00000448905 GMLQ99445 158 aa17.01■□□□□ 0.31
HMGB3-204ENST00000448905 ANKRD2Q9GZV1 360 aa17.01■□□□□ 0.31
HMGB3-204ENST00000448905 COA1Q9GZY4 146 aa17.01■□□□□ 0.31
HMGB3-204ENST00000448905 POLR2AP24928 1970 aaKnown RBP17■□□□□ 0.31
HMGB3-204ENST00000448905 PITPNM2Q9BZ72 1349 aa17■□□□□ 0.31
HMGB3-204ENST00000448905 H7C1W4 665 aa17■□□□□ 0.31
HMGB3-204ENST00000448905 NF2P35240 595 aa17■□□□□ 0.31
HMGB3-204ENST00000448905 CCT4P50991 539 aaKnown RBP17■□□□□ 0.31
HMGB3-204ENST00000448905 STRIP1Q5VSL9 837 aa17■□□□□ 0.31
HMGB3-204ENST00000448905 TSR2Q969E8 191 aaKnown RBP17■□□□□ 0.31
HMGB3-204ENST00000448905 FBXW7Q969H0 707 aa17■□□□□ 0.31
HMGB3-204ENST00000448905 MPHOSPH8Q99549 860 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 121.1 ms