RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 HIRAP54198 1017 aaPredicted RBP26.54■■□□□ 1.84
SDC1-205ENST00000447124 UBE3BQ7Z3V4 1068 aa26.54■■□□□ 1.84
SDC1-205ENST00000447124 ANKRD18AQ8IVF6 992 aa26.54■■□□□ 1.84
SDC1-205ENST00000447124 GREM2Q9H772 168 aa26.54■■□□□ 1.84
SDC1-205ENST00000447124 PSMD14O00487 310 aa26.53■■□□□ 1.84
SDC1-205ENST00000447124 MYH16Q9H6N6 1097 aa26.53■■□□□ 1.84
SDC1-205ENST00000447124 ANKIB1Q9P2G1 1089 aa26.53■■□□□ 1.84
SDC1-205ENST00000447124 CNOT7Q9UIV1 285 aaKnown RBP26.53■■□□□ 1.84
SDC1-205ENST00000447124 ZNF521Q96K83 1311 aa26.53■■□□□ 1.84
SDC1-205ENST00000447124 WTIPA6NIX2 430 aaPredicted RBP26.52■■□□□ 1.84
SDC1-205ENST00000447124 ECE2O60344 883 aa26.52■■□□□ 1.84
SDC1-205ENST00000447124 UFL1O94874 794 aa26.52■■□□□ 1.84
SDC1-205ENST00000447124 LINS1Q8NG48 757 aa26.52■■□□□ 1.84
SDC1-205ENST00000447124 ZC3H12CQ9C0D7 883 aaKnown RBP26.52■■□□□ 1.84
SDC1-205ENST00000447124 GGA1Q9UJY5 639 aa26.52■■□□□ 1.84
SDC1-205ENST00000447124 CNTNAP1P78357 1384 aa26.51■■□□□ 1.83
SDC1-205ENST00000447124 F6X3S4 739 aa26.51■■□□□ 1.83
SDC1-205ENST00000447124 PLA2G12BQ9BX93 195 aa26.51■■□□□ 1.83
SDC1-205ENST00000447124 PGAP2Q9UHJ9 254 aa26.51■■□□□ 1.83
SDC1-205ENST00000447124 RTL9Q8NET4 1388 aa26.5■■□□□ 1.83
SDC1-205ENST00000447124 TRAF5O00463 557 aa26.5■■□□□ 1.83
SDC1-205ENST00000447124 TRPM4Q8TD43 1214 aa26.5■■□□□ 1.83
SDC1-205ENST00000447124 IFFO2Q5TF58 517 aa26.49■■□□□ 1.83
SDC1-205ENST00000447124 DPF2Q92785 391 aa26.49■■□□□ 1.83
SDC1-205ENST00000447124 CDC5LQ99459 802 aaKnown RBP26.49■■□□□ 1.83
SDC1-205ENST00000447124 BSDC1Q9NW68 430 aaPredicted RBP26.49■■□□□ 1.83
SDC1-205ENST00000447124 MINPP1Q9UNW1 487 aa26.49■■□□□ 1.83
SDC1-205ENST00000447124 CSF1RP07333 972 aa26.48■■□□□ 1.83
SDC1-205ENST00000447124 HSPA1AP0DMV8 641 aaKnown RBP26.48■■□□□ 1.83
SDC1-205ENST00000447124 HSPA1BP0DMV9 641 aaKnown RBP26.48■■□□□ 1.83
SDC1-205ENST00000447124 VEGFBP49765 207 aa26.48■■□□□ 1.83
SDC1-205ENST00000447124 BEND3Q5T5X7 828 aa26.48■■□□□ 1.83
SDC1-205ENST00000447124 CST9Q5W186 159 aa26.48■■□□□ 1.83
SDC1-205ENST00000447124 MICALL2Q8IY33 904 aa26.48■■□□□ 1.83
SDC1-205ENST00000447124 CACNA1FO60840 1977 aa26.47■■□□□ 1.83
SDC1-205ENST00000447124 XDHP47989 1333 aa26.47■■□□□ 1.83
SDC1-205ENST00000447124 ATP2B4P23634 1241 aa26.47■■□□□ 1.83
SDC1-205ENST00000447124 H7C1D1 291 aa26.46■■□□□ 1.83
SDC1-205ENST00000447124 VIL1P09327 827 aaKnown RBP26.46■■□□□ 1.83
SDC1-205ENST00000447124 SAMD7Q7Z3H4 446 aa26.46■■□□□ 1.83
SDC1-205ENST00000447124 DEFB115Q30KQ5 88 aa26.45■■□□□ 1.82
SDC1-205ENST00000447124 COL13A1Q5TAT6 717 aaPredicted RBP26.45■■□□□ 1.82
SDC1-205ENST00000447124 GLIS2Q9BZE0 524 aaPredicted RBP26.45■■□□□ 1.82
SDC1-205ENST00000447124 RASSF10A6NK89 507 aa26.44■■□□□ 1.82
SDC1-205ENST00000447124 EGFRP00533 1210 aa26.44■■□□□ 1.82
SDC1-205ENST00000447124 ZC3H15Q8WU90 426 aaKnown RBP26.44■■□□□ 1.82
SDC1-205ENST00000447124 ITGA6P23229 1130 aa26.43■■□□□ 1.82
SDC1-205ENST00000447124 FAM161AQ3B820 660 aa26.43■■□□□ 1.82
SDC1-205ENST00000447124 SCN9AQ15858 1988 aa26.43■■□□□ 1.82
SDC1-205ENST00000447124 G3V3G9 751 aa26.42■■□□□ 1.82
SDC1-205ENST00000447124 RPS12P25398 132 aaKnown RBP26.42■■□□□ 1.82
SDC1-205ENST00000447124 FOXO4P98177 505 aa26.42■■□□□ 1.82
SDC1-205ENST00000447124 TBC1D10BQ4KMP7 808 aaPredicted RBP26.42■■□□□ 1.82
SDC1-205ENST00000447124 DCAF8Q5TAQ9 597 aa26.42■■□□□ 1.82
SDC1-205ENST00000447124 ABT1Q9ULW3 272 aaKnown RBP26.42■■□□□ 1.82
SDC1-205ENST00000447124 IGHMBP2P38935 993 aaKnown RBP26.41■■□□□ 1.82
SDC1-205ENST00000447124 MYH3P11055 1940 aa26.4■■□□□ 1.82
SDC1-205ENST00000447124 CCT4P50991 539 aaKnown RBP26.4■■□□□ 1.82
SDC1-205ENST00000447124 EPHA10Q5JZY3 1008 aa26.4■■□□□ 1.82
SDC1-205ENST00000447124 RBM26Q5T8P6 1007 aaKnown RBP26.4■■□□□ 1.82
SDC1-205ENST00000447124 DLK2Q6UY11 383 aa26.4■■□□□ 1.82
SDC1-205ENST00000447124 CDC37L1Q7L3B6 337 aa26.39■■□□□ 1.82
SDC1-205ENST00000447124 TXNRD3Q86VQ6 643 aa26.39■■□□□ 1.82
SDC1-205ENST00000447124 PODNQ7Z5L7 613 aa26.38■■□□□ 1.81
SDC1-205ENST00000447124 USP48Q86UV5 1035 aa26.38■■□□□ 1.81
SDC1-205ENST00000447124 CELF2O95319 508 aaKnown RBP26.37■■□□□ 1.81
SDC1-205ENST00000447124 SLFN5Q08AF3 891 aa26.37■■□□□ 1.81
SDC1-205ENST00000447124 RSBN1LQ6PCB5 846 aaPredicted RBP26.37■■□□□ 1.81
SDC1-205ENST00000447124 MRPL50Q8N5N7 158 aaKnown RBP26.37■■□□□ 1.81
SDC1-205ENST00000447124 GMLQ99445 158 aa26.37■■□□□ 1.81
SDC1-205ENST00000447124 WDR33Q9C0J8 1336 aaKnown RBP26.37■■□□□ 1.81
SDC1-205ENST00000447124 SLC4A10Q6U841 1118 aa26.36■■□□□ 1.81
SDC1-205ENST00000447124 CDCA7LQ96GN5 454 aa26.36■■□□□ 1.81
SDC1-205ENST00000447124 MPHOSPH8Q99549 860 aa26.36■■□□□ 1.81
SDC1-205ENST00000447124 LEMD3Q9Y2U8 911 aa26.36■■□□□ 1.81
SDC1-205ENST00000447124 TLL2Q9Y6L7 1015 aa26.36■■□□□ 1.81
SDC1-205ENST00000447124 MED23Q9ULK4 1368 aa26.35■■□□□ 1.81
SDC1-205ENST00000447124 ANKRD18BA2A2Z9 1011 aa26.35■■□□□ 1.81
SDC1-205ENST00000447124 E9PSI1 815 aa26.35■■□□□ 1.81
SDC1-205ENST00000447124 GRM8O00222 908 aa26.35■■□□□ 1.81
SDC1-205ENST00000447124 ALDH1L1O75891 902 aa26.35■■□□□ 1.81
SDC1-205ENST00000447124 AGBL3Q8NEM8 1001 aa26.35■■□□□ 1.81
SDC1-205ENST00000447124 USP17L3A6NCW0 530 aa26.34■■□□□ 1.81
SDC1-205ENST00000447124 USP17L4A6NCW7 530 aa26.34■■□□□ 1.81
SDC1-205ENST00000447124 FOXN1O15353 648 aa26.34■■□□□ 1.81
SDC1-205ENST00000447124 KLRK1P26718 216 aa26.34■■□□□ 1.81
SDC1-205ENST00000447124 ZNF280AP59817 542 aaPredicted RBP26.34■■□□□ 1.81
SDC1-205ENST00000447124 CHRNDQ07001 517 aa26.34■■□□□ 1.81
SDC1-205ENST00000447124 LMBR1LQ6UX01 489 aa26.34■■□□□ 1.81
SDC1-205ENST00000447124 USP17L1Q7RTZ2 530 aa26.34■■□□□ 1.81
SDC1-205ENST00000447124 ANKRD2Q9GZV1 360 aa26.34■■□□□ 1.81
SDC1-205ENST00000447124 WBP1LQ9NX94 342 aa26.34■■□□□ 1.81
SDC1-205ENST00000447124 TRPM7Q96QT4 1865 aa26.34■■□□□ 1.81
SDC1-205ENST00000447124 SNAP23O00161 211 aa26.33■■□□□ 1.81
SDC1-205ENST00000447124 KIF4BQ2VIQ3 1234 aa26.33■■□□□ 1.81
SDC1-205ENST00000447124 CYP4F22Q6NT55 531 aa26.33■■□□□ 1.81
SDC1-205ENST00000447124 MXD3Q9BW11 206 aa26.33■■□□□ 1.81
SDC1-205ENST00000447124 SRCIN1Q9C0H9 1055 aa26.33■■□□□ 1.81
SDC1-205ENST00000447124 ZNF804BA4D1E1 1349 aa26.33■■□□□ 1.81
SDC1-205ENST00000447124 ASTN2O75129 1339 aaPredicted RBP26.33■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms