RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 BCAR3O75815 825 aa14.42□□□□□ -0.1
COL28A1-203ENST00000435823 GPSM2P81274 684 aa14.42□□□□□ -0.1
COL28A1-203ENST00000435823 FOXO4P98177 505 aa14.42□□□□□ -0.1
COL28A1-203ENST00000435823 IFIT5Q13325 482 aaKnown RBP14.42□□□□□ -0.1
COL28A1-203ENST00000435823 AOC3Q16853 763 aa14.42□□□□□ -0.1
COL28A1-203ENST00000435823 LMBR1LQ6UX01 489 aa14.42□□□□□ -0.1
COL28A1-203ENST00000435823 FRAT1Q92837 279 aaPredicted RBP14.42□□□□□ -0.1
COL28A1-203ENST00000435823 EYA3Q99504 573 aa14.42□□□□□ -0.1
COL28A1-203ENST00000435823 MPHOSPH8Q99549 860 aa14.42□□□□□ -0.1
COL28A1-203ENST00000435823 NMRK2Q9NPI5 230 aa14.42□□□□□ -0.1
COL28A1-203ENST00000435823 ANKIB1Q9P2G1 1089 aa14.42□□□□□ -0.1
COL28A1-203ENST00000435823 NBPF7P0C2Y1 421 aaPredicted RBP14.41□□□□□ -0.1
COL28A1-203ENST00000435823 EIF6P56537 245 aaKnown RBP14.41□□□□□ -0.1
COL28A1-203ENST00000435823 CCDC57Q2TAC2 916 aa14.41□□□□□ -0.1
COL28A1-203ENST00000435823 C16orf71Q8IYS4 520 aaPredicted RBP14.41□□□□□ -0.1
COL28A1-203ENST00000435823 SUCLG2Q96I99 432 aa14.41□□□□□ -0.1
COL28A1-203ENST00000435823 RRAGCQ9HB90 399 aa14.41□□□□□ -0.1
COL28A1-203ENST00000435823 BSDC1Q9NW68 430 aaPredicted RBP14.41□□□□□ -0.1
COL28A1-203ENST00000435823 SPEF2Q9C093 1822 aa14.41□□□□□ -0.1
COL28A1-203ENST00000435823 XDHP47989 1333 aa14.41□□□□□ -0.1
COL28A1-203ENST00000435823 FZD9O00144 591 aa14.4□□□□□ -0.1
COL28A1-203ENST00000435823 KIAA2012Q0VF49 1180 aa14.4□□□□□ -0.1
COL28A1-203ENST00000435823 WASHC4Q2M389 1173 aa14.4□□□□□ -0.1
COL28A1-203ENST00000435823 TAF7LQ5H9L4 462 aa14.4□□□□□ -0.1
COL28A1-203ENST00000435823 EPHA10Q5JZY3 1008 aa14.4□□□□□ -0.1
COL28A1-203ENST00000435823 ZKSCAN2Q63HK3 967 aa14.4□□□□□ -0.1
COL28A1-203ENST00000435823 ATF7IPQ6VMQ6 1270 aa14.4□□□□□ -0.1
COL28A1-203ENST00000435823 TBC1D16Q8TBP0 767 aa14.4□□□□□ -0.1
COL28A1-203ENST00000435823 PODXL2Q9NZ53 605 aa14.4□□□□□ -0.1
COL28A1-203ENST00000435823 GGA1Q9UJY5 639 aa14.4□□□□□ -0.1
COL28A1-203ENST00000435823 HDAC5Q9UQL6 1122 aa14.4□□□□□ -0.1
COL28A1-203ENST00000435823 ZNF541Q9H0D2 1346 aa14.4□□□□□ -0.1
COL28A1-203ENST00000435823 DUOX1Q9NRD9 1551 aa14.39□□□□□ -0.11
COL28A1-203ENST00000435823 KIF3CO14782 793 aa14.39□□□□□ -0.11
COL28A1-203ENST00000435823 DDNO94850 711 aaPredicted RBP14.39□□□□□ -0.11
COL28A1-203ENST00000435823 UFL1O94874 794 aa14.39□□□□□ -0.11
COL28A1-203ENST00000435823 USP44Q9H0E7 712 aa14.39□□□□□ -0.11
COL28A1-203ENST00000435823 POLLQ9UGP5 575 aa14.39□□□□□ -0.11
COL28A1-203ENST00000435823 MINPP1Q9UNW1 487 aa14.39□□□□□ -0.11
COL28A1-203ENST00000435823 LTBP1Q14766 1721 aa14.38□□□□□ -0.11
COL28A1-203ENST00000435823 UBTFL1P0CB47 393 aaPredicted RBP14.38□□□□□ -0.11
COL28A1-203ENST00000435823 TRIM27P14373 513 aa14.38□□□□□ -0.11
COL28A1-203ENST00000435823 VEGFAP15692 232 aaPredicted RBP14.38□□□□□ -0.11
COL28A1-203ENST00000435823 ATP2B4P23634 1241 aa14.38□□□□□ -0.11
COL28A1-203ENST00000435823 GPC2Q8N158 579 aa14.38□□□□□ -0.11
COL28A1-203ENST00000435823 ZC3H12CQ9C0D7 883 aaKnown RBP14.38□□□□□ -0.11
COL28A1-203ENST00000435823 ANKRD2Q9GZV1 360 aa14.38□□□□□ -0.11
COL28A1-203ENST00000435823 BICC1Q9H694 974 aaKnown RBP14.38□□□□□ -0.11
COL28A1-203ENST00000435823 ZNRF3Q9ULT6 936 aa14.38□□□□□ -0.11
COL28A1-203ENST00000435823 COL4A5P29400 1685 aa14.38□□□□□ -0.11
COL28A1-203ENST00000435823 WDR90Q96KV7 1748 aa14.38□□□□□ -0.11
COL28A1-203ENST00000435823 IQCA1LA6NCM1 817 aa14.37□□□□□ -0.11
COL28A1-203ENST00000435823 G3V3G9 751 aa14.37□□□□□ -0.11
COL28A1-203ENST00000435823 RIMBP2O15034 1052 aa14.37□□□□□ -0.11
COL28A1-203ENST00000435823 RABL6Q3YEC7 729 aaPredicted RBP14.37□□□□□ -0.11
COL28A1-203ENST00000435823 DCAF8Q5TAQ9 597 aa14.37□□□□□ -0.11
COL28A1-203ENST00000435823 INTS3Q68E01 1043 aaKnown RBP14.37□□□□□ -0.11
COL28A1-203ENST00000435823 KAZALD1Q96I82 304 aa14.37□□□□□ -0.11
COL28A1-203ENST00000435823 GJA3Q9Y6H8 435 aa14.37□□□□□ -0.11
COL28A1-203ENST00000435823 TOMM70O94826 608 aa14.36□□□□□ -0.11
COL28A1-203ENST00000435823 C1QTNF8P60827 252 aa14.36□□□□□ -0.11
COL28A1-203ENST00000435823 CLUAP1Q96AJ1 413 aa14.36□□□□□ -0.11
COL28A1-203ENST00000435823 L3MBTL3Q96JM7 780 aaPredicted RBP14.36□□□□□ -0.11
COL28A1-203ENST00000435823 GNAI3P08754 354 aa14.35□□□□□ -0.11
COL28A1-203ENST00000435823 KCNJ4P48050 445 aa14.35□□□□□ -0.11
COL28A1-203ENST00000435823 LDHAL6AQ6ZMR3 332 aa14.35□□□□□ -0.11
COL28A1-203ENST00000435823 FTSJ3Q8IY81 847 aaKnown RBP14.35□□□□□ -0.11
COL28A1-203ENST00000435823 ANKRD44Q8N8A2 993 aa14.35□□□□□ -0.11
COL28A1-203ENST00000435823 GPR101Q96P66 508 aaPredicted RBP14.35□□□□□ -0.11
COL28A1-203ENST00000435823 CNNM1Q9NRU3 951 aa14.35□□□□□ -0.11
COL28A1-203ENST00000435823 LEMD3Q9Y2U8 911 aa14.35□□□□□ -0.11
COL28A1-203ENST00000435823 ECE2O60344 883 aa14.34□□□□□ -0.11
COL28A1-203ENST00000435823 LMOD1P29536 600 aaPredicted RBP14.34□□□□□ -0.11
COL28A1-203ENST00000435823 CHRNDQ07001 517 aa14.34□□□□□ -0.11
COL28A1-203ENST00000435823 CXCL9Q07325 125 aa14.34□□□□□ -0.11
COL28A1-203ENST00000435823 TNIP1Q15025 636 aa14.34□□□□□ -0.11
COL28A1-203ENST00000435823 CIAPIN1Q6FI81 312 aa14.34□□□□□ -0.11
COL28A1-203ENST00000435823 RBM46Q8TBY0 533 aaKnown RBP14.34□□□□□ -0.11
COL28A1-203ENST00000435823 ZNF594Q96JF6 807 aaPredicted RBP14.34□□□□□ -0.11
COL28A1-203ENST00000435823 DBNDD1Q9H9R9 158 aa14.34□□□□□ -0.11
COL28A1-203ENST00000435823 SCN4AP35499 1836 aa14.34□□□□□ -0.11
COL28A1-203ENST00000435823 POTECB2RU33 542 aa14.33□□□□□ -0.12
COL28A1-203ENST00000435823 RAD17O75943 681 aa14.33□□□□□ -0.12
COL28A1-203ENST00000435823 DOK7Q18PE1 504 aa14.33□□□□□ -0.12
COL28A1-203ENST00000435823 DZIP1LQ8IYY4 767 aaKnown RBP14.33□□□□□ -0.12
COL28A1-203ENST00000435823 MEIS3Q99687 375 aa14.33□□□□□ -0.12
COL28A1-203ENST00000435823 HACL1Q9UJ83 578 aa14.33□□□□□ -0.12
COL28A1-203ENST00000435823 TNNQ9UQP3 1299 aa14.33□□□□□ -0.12
COL28A1-203ENST00000435823 ZNF804BA4D1E1 1349 aa14.33□□□□□ -0.12
COL28A1-203ENST00000435823 MED23Q9ULK4 1368 aa14.33□□□□□ -0.12
COL28A1-203ENST00000435823 YDJCA8MPS7 323 aa14.32□□□□□ -0.12
COL28A1-203ENST00000435823 MS4A1P11836 297 aa14.32□□□□□ -0.12
COL28A1-203ENST00000435823 TMEM57Q8N5G2 664 aa14.32□□□□□ -0.12
COL28A1-203ENST00000435823 YTHDC1Q96MU7 727 aaKnown RBP14.32□□□□□ -0.12
COL28A1-203ENST00000435823 RCAN3Q9UKA8 241 aa14.32□□□□□ -0.12
COL28A1-203ENST00000435823 LRRFIP2Q9Y608 721 aaKnown RBP14.32□□□□□ -0.12
COL28A1-203ENST00000435823 TAF5LO75529 589 aa14.31□□□□□ -0.12
COL28A1-203ENST00000435823 SMC1BQ8NDV3 1235 aa14.31□□□□□ -0.12
COL28A1-203ENST00000435823 TAF1DQ9H5J8 278 aaPredicted RBP14.31□□□□□ -0.12
COL28A1-203ENST00000435823 PLIN1O60240 522 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms