RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 DBNDD2Q9BQY9 259 aa13.33□□□□□ -0.28
USP4-205ENST00000431357 PALLDQ8WX93 1383 aa13.33□□□□□ -0.28
USP4-205ENST00000431357 PFKFB2O60825 505 aa13.33□□□□□ -0.28
USP4-205ENST00000431357 DTNBO60941 627 aa13.33□□□□□ -0.28
USP4-205ENST00000431357 HSP90B1P14625 803 aaKnown RBP13.33□□□□□ -0.28
USP4-205ENST00000431357 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.33□□□□□ -0.28
USP4-205ENST00000431357 DNAJC2Q99543 621 aaKnown RBP13.33□□□□□ -0.28
USP4-205ENST00000431357 TFIP11Q9UBB9 837 aaKnown RBP13.33□□□□□ -0.28
USP4-205ENST00000431357 MEGF6O75095 1541 aa13.32□□□□□ -0.28
USP4-205ENST00000431357 AFDNP55196 1824 aaKnown RBP13.32□□□□□ -0.28
USP4-205ENST00000431357 CYP21A2P08686 494 aa13.32□□□□□ -0.28
USP4-205ENST00000431357 ATL3Q6DD88 541 aa13.32□□□□□ -0.28
USP4-205ENST00000431357 NAA16Q6N069 864 aaPredicted RBP13.32□□□□□ -0.28
USP4-205ENST00000431357 SMAP1Q8IYB5 467 aaPredicted RBP13.32□□□□□ -0.28
USP4-205ENST00000431357 MPNDQ8N594 471 aa13.32□□□□□ -0.28
USP4-205ENST00000431357 BRF1Q92994 677 aa13.32□□□□□ -0.28
USP4-205ENST00000431357 DSCC1Q9BVC3 393 aa13.32□□□□□ -0.28
USP4-205ENST00000431357 TMEM94Q12767 1356 aa13.32□□□□□ -0.28
USP4-205ENST00000431357 CSB-PGBD3P0DP91 1061 aa13.31□□□□□ -0.28
USP4-205ENST00000431357 CABP4P57796 275 aa13.31□□□□□ -0.28
USP4-205ENST00000431357 CAMK4Q16566 473 aa13.31□□□□□ -0.28
USP4-205ENST00000431357 DHX32Q7L7V1 743 aaKnown RBP13.31□□□□□ -0.28
USP4-205ENST00000431357 TDRD7Q8NHU6 1098 aaKnown RBP13.31□□□□□ -0.28
USP4-205ENST00000431357 BICD2Q8TD16 824 aa13.31□□□□□ -0.28
USP4-205ENST00000431357 CHMP3Q9Y3E7 222 aa13.31□□□□□ -0.28
USP4-205ENST00000431357 ARFGEF2Q9Y6D5 1785 aa13.31□□□□□ -0.28
USP4-205ENST00000431357 H7C1W4 665 aa13.31□□□□□ -0.28
USP4-205ENST00000431357 CTAGE5O15320 804 aa13.31□□□□□ -0.28
USP4-205ENST00000431357 JAK2O60674 1132 aa13.31□□□□□ -0.28
USP4-205ENST00000431357 ANO6Q4KMQ2 910 aa13.31□□□□□ -0.28
USP4-205ENST00000431357 KCNF1Q9H3M0 494 aa13.31□□□□□ -0.28
USP4-205ENST00000431357 CBX8Q9HC52 389 aa13.31□□□□□ -0.28
USP4-205ENST00000431357 CHAF1AQ13111 956 aaPredicted RBP13.3□□□□□ -0.28
USP4-205ENST00000431357 LMBR1LQ6UX01 489 aa13.3□□□□□ -0.28
USP4-205ENST00000431357 PGBD1Q96JS3 809 aa13.3□□□□□ -0.28
USP4-205ENST00000431357 COL18A1P39060 1754 aa13.3□□□□□ -0.28
USP4-205ENST00000431357 ATP5J2-PTCD1G3V325 749 aa13.3□□□□□ -0.28
USP4-205ENST00000431357 CYP27B1O15528 508 aa13.3□□□□□ -0.28
USP4-205ENST00000431357 PTCD1O75127 700 aaKnown RBP13.3□□□□□ -0.28
USP4-205ENST00000431357 IL15P40933 162 aaPredicted RBP13.3□□□□□ -0.28
USP4-205ENST00000431357 SCRN1Q12765 414 aa13.3□□□□□ -0.28
USP4-205ENST00000431357 CCDC129Q6ZRS4 1044 aa13.3□□□□□ -0.28
USP4-205ENST00000431357 DDX46Q7L014 1031 aaKnown RBP13.3□□□□□ -0.28
USP4-205ENST00000431357 CKAP2LQ8IYA6 745 aa13.3□□□□□ -0.28
USP4-205ENST00000431357 SEC62Q99442 399 aaKnown RBP13.3□□□□□ -0.28
USP4-205ENST00000431357 AGXT2Q9BYV1 514 aa13.3□□□□□ -0.28
USP4-205ENST00000431357 PAG1Q9NWQ8 432 aa13.3□□□□□ -0.28
USP4-205ENST00000431357 LAMB4A4D0S4 1761 aa13.3□□□□□ -0.28
USP4-205ENST00000431357 PKD1L3Q7Z443 1732 aa13.3□□□□□ -0.28
USP4-205ENST00000431357 ADAMTSL3P82987 1691 aa13.29□□□□□ -0.28
USP4-205ENST00000431357 FOXO4P98177 505 aa13.29□□□□□ -0.28
USP4-205ENST00000431357 LUZP1Q86V48 1076 aa13.29□□□□□ -0.28
USP4-205ENST00000431357 SPC24Q8NBT2 197 aa13.29□□□□□ -0.28
USP4-205ENST00000431357 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.29□□□□□ -0.28
USP4-205ENST00000431357 JARID2Q92833 1246 aaPredicted RBP13.29□□□□□ -0.28
USP4-205ENST00000431357 ATG3Q9NT62 314 aa13.29□□□□□ -0.28
USP4-205ENST00000431357 RCOR1Q9UKL0 485 aa13.29□□□□□ -0.28
USP4-205ENST00000431357 NR1I2O75469 434 aa13.28□□□□□ -0.28
USP4-205ENST00000431357 ZNF75DP51815 510 aa13.28□□□□□ -0.28
USP4-205ENST00000431357 EXOSC10Q01780 885 aaKnown RBP13.28□□□□□ -0.28
USP4-205ENST00000431357 ZMYM1Q5SVZ6 1142 aa13.28□□□□□ -0.28
USP4-205ENST00000431357 PLA2G4DQ86XP0 818 aa13.28□□□□□ -0.28
USP4-205ENST00000431357 NSUN7Q8NE18 718 aaKnown RBP13.28□□□□□ -0.28
USP4-205ENST00000431357 ZNF396Q96N95 335 aaPredicted RBP13.28□□□□□ -0.28
USP4-205ENST00000431357 CWC25Q9NXE8 425 aaPredicted RBP13.28□□□□□ -0.28
USP4-205ENST00000431357 PYCARDQ9ULZ3 195 aa13.28□□□□□ -0.28
USP4-205ENST00000431357 CDC25BP30305 580 aa13.28□□□□□ -0.28
USP4-205ENST00000431357 ZNF165P49910 485 aa13.28□□□□□ -0.28
USP4-205ENST00000431357 LRRFIP1Q32MZ4 808 aaKnown RBP13.28□□□□□ -0.28
USP4-205ENST00000431357 ATG9AQ7Z3C6 839 aa13.28□□□□□ -0.28
USP4-205ENST00000431357 C17orf53Q8N3J3 647 aaPredicted RBP13.28□□□□□ -0.28
USP4-205ENST00000431357 IPO4Q8TEX9 1081 aaKnown RBP13.28□□□□□ -0.28
USP4-205ENST00000431357 PARP4Q9UKK3 1724 aaKnown RBP13.27□□□□□ -0.28
USP4-205ENST00000431357 CIAO1O76071 339 aa13.27□□□□□ -0.28
USP4-205ENST00000431357 ATF3P18847 181 aa13.27□□□□□ -0.28
USP4-205ENST00000431357 STOX1Q6ZVD7 989 aa13.27□□□□□ -0.28
USP4-205ENST00000431357 DDX11Q96FC9 970 aa13.27□□□□□ -0.28
USP4-205ENST00000431357 ZNF274Q96GC6 653 aaPredicted RBP13.27□□□□□ -0.28
USP4-205ENST00000431357 NEUROD6Q96NK8 337 aa13.27□□□□□ -0.28
USP4-205ENST00000431357 TRIM5Q9C035 493 aa13.27□□□□□ -0.28
USP4-205ENST00000431357 NAP1L2Q9ULW6 460 aaPredicted RBP13.27□□□□□ -0.28
USP4-205ENST00000431357 NDUFB9Q9Y6M9 179 aa13.27□□□□□ -0.28
USP4-205ENST00000431357 SPEF2Q9C093 1822 aa13.27□□□□□ -0.29
USP4-205ENST00000431357 GOLIM4O00461 696 aa13.27□□□□□ -0.29
USP4-205ENST00000431357 PIP4K2AP48426 406 aaPredicted RBP13.27□□□□□ -0.29
USP4-205ENST00000431357 UTP14CQ5TAP6 766 aaKnown RBP13.27□□□□□ -0.29
USP4-205ENST00000431357 DRC7Q8IY82 874 aa13.27□□□□□ -0.29
USP4-205ENST00000431357 FBXL16Q8N461 479 aa13.27□□□□□ -0.29
USP4-205ENST00000431357 DCCP43146 1447 aa13.27□□□□□ -0.29
USP4-205ENST00000431357 PTPDC1A2A3K4 754 aa13.26□□□□□ -0.29
USP4-205ENST00000431357 EYA2O00167 538 aa13.26□□□□□ -0.29
USP4-205ENST00000431357 RNF113AO15541 343 aaKnown RBP13.26□□□□□ -0.29
USP4-205ENST00000431357 PTGS1P23219 599 aa13.26□□□□□ -0.29
USP4-205ENST00000431357 ADD1P35611 737 aaKnown RBP13.26□□□□□ -0.29
USP4-205ENST00000431357 SARM1Q6SZW1 724 aa13.26□□□□□ -0.29
USP4-205ENST00000431357 CCDC191Q8NCU4 936 aa13.26□□□□□ -0.29
USP4-205ENST00000431357 BBXQ8WY36 941 aaPredicted RBP13.26□□□□□ -0.29
USP4-205ENST00000431357 GLI3P10071 1580 aa13.26□□□□□ -0.29
USP4-205ENST00000431357 IFIT1P09914 478 aaKnown RBP13.25□□□□□ -0.29
USP4-205ENST00000431357 CCDC186Q7Z3E2 898 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms