RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 ITPRIPQ8IWB1 547 aa15.61■□□□□ 0.09
USP40-205ENST00000430158 SP8Q8IXZ3 490 aa15.61■□□□□ 0.09
USP40-205ENST00000430158 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.61■□□□□ 0.09
USP40-205ENST00000430158 COG6Q9Y2V7 657 aa15.61■□□□□ 0.09
USP40-205ENST00000430158 SPEF2Q9C093 1822 aa15.61■□□□□ 0.09
USP40-205ENST00000430158 CCDC88AQ3V6T2 1871 aa15.61■□□□□ 0.09
USP40-205ENST00000430158 CHD4Q14839 1912 aa15.6■□□□□ 0.09
USP40-205ENST00000430158 PPEF1O14829 653 aaPredicted RBP15.6■□□□□ 0.09
USP40-205ENST00000430158 GRIN3BO60391 1043 aa15.6■□□□□ 0.09
USP40-205ENST00000430158 MTX1Q13505 466 aa15.6■□□□□ 0.09
USP40-205ENST00000430158 ZBTB40Q9NUA8 1239 aa15.6■□□□□ 0.09
USP40-205ENST00000430158 CC2D2BQ6DHV5 1058 aa15.59■□□□□ 0.09
USP40-205ENST00000430158 TMC4Q7Z404 712 aa15.59■□□□□ 0.09
USP40-205ENST00000430158 PELP1Q8IZL8 1130 aaKnown RBP15.59■□□□□ 0.09
USP40-205ENST00000430158 BSDC1Q9NW68 430 aaPredicted RBP15.59■□□□□ 0.09
USP40-205ENST00000430158 DUOX1Q9NRD9 1551 aa15.58■□□□□ 0.09
USP40-205ENST00000430158 A0A1B0GUL6 1792 aa15.58■□□□□ 0.08
USP40-205ENST00000430158 GNAI2P04899 355 aa15.58■□□□□ 0.08
USP40-205ENST00000430158 CDC5LQ99459 802 aaKnown RBP15.58■□□□□ 0.08
USP40-205ENST00000430158 DDX19BQ9UMR2 479 aa15.58■□□□□ 0.08
USP40-205ENST00000430158 LTBP3Q9NS15 1303 aa15.58■□□□□ 0.08
USP40-205ENST00000430158 DICER1Q9UPY3 1922 aaKnown RBP15.57■□□□□ 0.08
USP40-205ENST00000430158 ANKRD18BA2A2Z9 1011 aa15.57■□□□□ 0.08
USP40-205ENST00000430158 IFIT5Q13325 482 aaKnown RBP15.57■□□□□ 0.08
USP40-205ENST00000430158 CCDC93Q567U6 631 aa15.57■□□□□ 0.08
USP40-205ENST00000430158 SOGA3Q5TF21 947 aa15.57■□□□□ 0.08
USP40-205ENST00000430158 ANKRD18AQ8IVF6 992 aa15.57■□□□□ 0.08
USP40-205ENST00000430158 ZNF594Q96JF6 807 aaPredicted RBP15.57■□□□□ 0.08
USP40-205ENST00000430158 RTFDC1Q9BY42 306 aaPredicted RBP15.57■□□□□ 0.08
USP40-205ENST00000430158 HDAC5Q9UQL6 1122 aa15.57■□□□□ 0.08
USP40-205ENST00000430158 SUPT16HQ9Y5B9 1047 aaKnown RBP15.57■□□□□ 0.08
USP40-205ENST00000430158 PTPN12Q05209 780 aaKnown RBP15.56■□□□□ 0.08
USP40-205ENST00000430158 LHX8Q68G74 356 aa15.56■□□□□ 0.08
USP40-205ENST00000430158 ARHGAP27Q6ZUM4 889 aa15.56■□□□□ 0.08
USP40-205ENST00000430158 RTKN2Q8IZC4 609 aa15.56■□□□□ 0.08
USP40-205ENST00000430158 PSMD1Q99460 953 aa15.56■□□□□ 0.08
USP40-205ENST00000430158 MINPP1Q9UNW1 487 aa15.56■□□□□ 0.08
USP40-205ENST00000430158 GPSM2P81274 684 aa15.55■□□□□ 0.08
USP40-205ENST00000430158 ATP8B2P98198 1209 aa15.55■□□□□ 0.08
USP40-205ENST00000430158 RASSF7Q02833 373 aa15.55■□□□□ 0.08
USP40-205ENST00000430158 CCDC57Q2TAC2 916 aa15.55■□□□□ 0.08
USP40-205ENST00000430158 GRIPAP1Q4V328 841 aa15.55■□□□□ 0.08
USP40-205ENST00000430158 PUS3Q9BZE2 481 aaKnown RBP15.55■□□□□ 0.08
USP40-205ENST00000430158 C1orf115Q9H7X2 142 aa15.55■□□□□ 0.08
USP40-205ENST00000430158 PODXL2Q9NZ53 605 aa15.55■□□□□ 0.08
USP40-205ENST00000430158 RIPOR2Q9Y4F9 1068 aa15.55■□□□□ 0.08
USP40-205ENST00000430158 PNMA6EA0A0J9YXQ4 647 aa15.54■□□□□ 0.08
USP40-205ENST00000430158 WTIPA6NIX2 430 aaPredicted RBP15.54■□□□□ 0.08
USP40-205ENST00000430158 FKBP4Q02790 459 aaKnown RBP eCLIP15.54■□□□□ 0.08
USP40-205ENST00000430158 KLHDC4Q8TBB5 520 aa15.54■□□□□ 0.08
USP40-205ENST00000430158 POLLQ9UGP5 575 aa15.54■□□□□ 0.08
USP40-205ENST00000430158 CHMP3Q9Y3E7 222 aa15.54■□□□□ 0.08
USP40-205ENST00000430158 COL4A5P29400 1685 aa15.54■□□□□ 0.08
USP40-205ENST00000430158 PRR29P0C7W0 189 aa15.53■□□□□ 0.08
USP40-205ENST00000430158 IGHMBP2P38935 993 aaKnown RBP15.53■□□□□ 0.08
USP40-205ENST00000430158 CEP85Q6P2H3 762 aa15.53■□□□□ 0.08
USP40-205ENST00000430158 SIRT2Q8IXJ6 389 aa15.53■□□□□ 0.08
USP40-205ENST00000430158 MPNDQ8N594 471 aa15.53■□□□□ 0.08
USP40-205ENST00000430158 SSH3Q8TE77 659 aa15.53■□□□□ 0.08
USP40-205ENST00000430158 TAOK3Q9H2K8 898 aa15.53■□□□□ 0.08
USP40-205ENST00000430158 COPRSQ9NQ92 184 aa15.53■□□□□ 0.08
USP40-205ENST00000430158 IRS2Q9Y4H2 1338 aa15.52■□□□□ 0.08
USP40-205ENST00000430158 LRRC24Q50LG9 513 aa15.52■□□□□ 0.08
USP40-205ENST00000430158 LDHAL6AQ6ZMR3 332 aa15.52■□□□□ 0.08
USP40-205ENST00000430158 ATG9AQ7Z3C6 839 aa15.52■□□□□ 0.08
USP40-205ENST00000430158 CRBNQ96SW2 442 aa15.52■□□□□ 0.08
USP40-205ENST00000430158 SRGAP3O43295 1099 aa15.51■□□□□ 0.07
USP40-205ENST00000430158 CHRNDQ07001 517 aa15.51■□□□□ 0.07
USP40-205ENST00000430158 VGLL2Q8N8G2 317 aa15.51■□□□□ 0.07
USP40-205ENST00000430158 TBC1D16Q8TBP0 767 aa15.51■□□□□ 0.07
USP40-205ENST00000430158 MPHOSPH8Q99549 860 aa15.51■□□□□ 0.07
USP40-205ENST00000430158 PA2G4Q9UQ80 394 aaKnown RBP15.51■□□□□ 0.07
USP40-205ENST00000430158 XDHP47989 1333 aa15.5■□□□□ 0.07
USP40-205ENST00000430158 EYA2O00167 538 aa15.5■□□□□ 0.07
USP40-205ENST00000430158 LMNB1P20700 586 aa15.5■□□□□ 0.07
USP40-205ENST00000430158 DPP8Q6V1X1 898 aaPredicted RBP15.5■□□□□ 0.07
USP40-205ENST00000430158 ZNF277Q9NRM2 450 aaPredicted RBP15.5■□□□□ 0.07
USP40-205ENST00000430158 FBXO3Q9UK99 471 aa15.5■□□□□ 0.07
USP40-205ENST00000430158 NSFL1CQ9UNZ2 370 aaKnown RBP15.5■□□□□ 0.07
USP40-205ENST00000430158 CIAO1O76071 339 aa15.49■□□□□ 0.07
USP40-205ENST00000430158 C9orf131Q5VYM1 1079 aa15.49■□□□□ 0.07
USP40-205ENST00000430158 RPAP2Q8IXW5 612 aaPredicted RBP15.49■□□□□ 0.07
USP40-205ENST00000430158 VPS33BQ9H267 617 aa15.49■□□□□ 0.07
USP40-205ENST00000430158 CHMP4BQ9H444 224 aaKnown RBP15.49■□□□□ 0.07
USP40-205ENST00000430158 NOP58Q9Y2X3 529 aaKnown RBP15.49■□□□□ 0.07
USP40-205ENST00000430158 SNAP23O00161 211 aa15.48■□□□□ 0.07
USP40-205ENST00000430158 ATP2B4P23634 1241 aa15.48■□□□□ 0.07
USP40-205ENST00000430158 IARSP41252 1262 aaKnown RBP15.48■□□□□ 0.07
USP40-205ENST00000430158 KIAA2012Q0VF49 1180 aa15.48■□□□□ 0.07
USP40-205ENST00000430158 TAF7LQ5H9L4 462 aa15.48■□□□□ 0.07
USP40-205ENST00000430158 HELBQ8NG08 1087 aaPredicted RBP15.48■□□□□ 0.07
USP40-205ENST00000430158 GPR101Q96P66 508 aaPredicted RBP15.48■□□□□ 0.07
USP40-205ENST00000430158 ANKRD2Q9GZV1 360 aa15.48■□□□□ 0.07
USP40-205ENST00000430158 CNNM1Q9NRU3 951 aa15.48■□□□□ 0.07
USP40-205ENST00000430158 PCDHB15Q9Y5E8 787 aa15.48■□□□□ 0.07
USP40-205ENST00000430158 SCN9AQ15858 1988 aa15.47■□□□□ 0.07
USP40-205ENST00000430158 MROH5Q6ZUA9 1318 aa15.47■□□□□ 0.07
USP40-205ENST00000430158 TAF5LO75529 589 aa15.47■□□□□ 0.07
USP40-205ENST00000430158 C15orf52Q6ZUT6 534 aaKnown RBP15.47■□□□□ 0.07
USP40-205ENST00000430158 TXNRD3Q86VQ6 643 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms