RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 ZNF594Q96JF6 807 aaPredicted RBP12.44□□□□□ -0.42
CD44-207ENST00000425428 ANKIB1Q9P2G1 1089 aa12.44□□□□□ -0.42
CD44-207ENST00000425428 PA2G4Q9UQ80 394 aaKnown RBP12.44□□□□□ -0.42
CD44-207ENST00000425428 CC2D2BQ6DHV5 1058 aa12.43□□□□□ -0.42
CD44-207ENST00000425428 C3orf67Q6ZVT6 689 aa12.43□□□□□ -0.42
CD44-207ENST00000425428 KLHDC4Q8TBB5 520 aa12.43□□□□□ -0.42
CD44-207ENST00000425428 IGHDP01880 384 aa12.43□□□□□ -0.42
CD44-207ENST00000425428 IFIT2P09913 472 aaKnown RBP12.43□□□□□ -0.42
CD44-207ENST00000425428 RFX5P48382 616 aaPredicted RBP12.43□□□□□ -0.42
CD44-207ENST00000425428 DALRD3Q5D0E6 543 aaKnown RBP12.43□□□□□ -0.42
CD44-207ENST00000425428 GORABQ5T7V8 394 aa12.43□□□□□ -0.42
CD44-207ENST00000425428 SGIP1Q9BQI5 828 aa12.43□□□□□ -0.42
CD44-207ENST00000425428 TAF1P21675 1872 aa12.42□□□□□ -0.42
CD44-207ENST00000425428 A0A0G2JLW4 131 aa12.42□□□□□ -0.42
CD44-207ENST00000425428 DPEP1P16444 411 aa12.42□□□□□ -0.42
CD44-207ENST00000425428 CHRNA5P30532 468 aa12.42□□□□□ -0.42
CD44-207ENST00000425428 SP8Q8IXZ3 490 aa12.42□□□□□ -0.42
CD44-207ENST00000425428 SMC5Q8IY18 1101 aa12.42□□□□□ -0.42
CD44-207ENST00000425428 RHPN1Q8TCX5 695 aa12.42□□□□□ -0.42
CD44-207ENST00000425428 CELF1Q92879 486 aaKnown RBP12.42□□□□□ -0.42
CD44-207ENST00000425428 DLEC1Q9Y238 1755 aa12.41□□□□□ -0.42
CD44-207ENST00000425428 IFIT1P09914 478 aaKnown RBP12.41□□□□□ -0.42
CD44-207ENST00000425428 XDHP47989 1333 aa12.41□□□□□ -0.42
CD44-207ENST00000425428 G3V3G9 751 aa12.41□□□□□ -0.42
CD44-207ENST00000425428 SLC5A1P13866 664 aa12.41□□□□□ -0.42
CD44-207ENST00000425428 PUM3Q15397 648 aaKnown RBP12.41□□□□□ -0.42
CD44-207ENST00000425428 LRRC24Q50LG9 513 aa12.41□□□□□ -0.42
CD44-207ENST00000425428 DCAF8Q5TAQ9 597 aa12.41□□□□□ -0.42
CD44-207ENST00000425428 PRPF40BQ6NWY9 871 aaKnown RBP12.41□□□□□ -0.42
CD44-207ENST00000425428 CHD1LQ86WJ1 897 aa12.41□□□□□ -0.42
CD44-207ENST00000425428 SUPT20HQ8NEM7 779 aa12.41□□□□□ -0.42
CD44-207ENST00000425428 NEUROD6Q96NK8 337 aa12.41□□□□□ -0.42
CD44-207ENST00000425428 ATP6V0A2Q9Y487 856 aa12.41□□□□□ -0.42
CD44-207ENST00000425428 COL11A2P13942 1736 aaPredicted RBP12.4□□□□□ -0.42
CD44-207ENST00000425428 DCAF8L1A6NGE4 600 aa12.4□□□□□ -0.42
CD44-207ENST00000425428 PDE8BO95263 885 aa12.4□□□□□ -0.42
CD44-207ENST00000425428 CHRNDQ07001 517 aa12.4□□□□□ -0.42
CD44-207ENST00000425428 TFCP2Q12800 502 aa12.4□□□□□ -0.42
CD44-207ENST00000425428 VPS37DQ86XT2 251 aa12.4□□□□□ -0.42
CD44-207ENST00000425428 GPR108Q9NPR9 543 aa12.4□□□□□ -0.42
CD44-207ENST00000425428 MINPP1Q9UNW1 487 aa12.4□□□□□ -0.42
CD44-207ENST00000425428 NSFL1CQ9UNZ2 370 aaKnown RBP12.4□□□□□ -0.42
CD44-207ENST00000425428 LEMD3Q9Y2U8 911 aa12.4□□□□□ -0.42
CD44-207ENST00000425428 RIPOR2Q9Y4F9 1068 aa12.4□□□□□ -0.42
CD44-207ENST00000425428 ATP2B4P23634 1241 aa12.39□□□□□ -0.43
CD44-207ENST00000425428 NUCB1Q02818 461 aa12.39□□□□□ -0.43
CD44-207ENST00000425428 ATP2B3Q16720 1220 aa12.39□□□□□ -0.43
CD44-207ENST00000425428 CAVIN4Q5BKX8 364 aa12.39□□□□□ -0.43
CD44-207ENST00000425428 DPP8Q6V1X1 898 aaPredicted RBP12.39□□□□□ -0.43
CD44-207ENST00000425428 AACSQ86V21 672 aa12.39□□□□□ -0.43
CD44-207ENST00000425428 RTKN2Q8IZC4 609 aa12.39□□□□□ -0.43
CD44-207ENST00000425428 MPNDQ8N594 471 aa12.39□□□□□ -0.43
CD44-207ENST00000425428 EYA3Q99504 573 aa12.39□□□□□ -0.43
CD44-207ENST00000425428 PUS3Q9BZE2 481 aaKnown RBP12.39□□□□□ -0.43
CD44-207ENST00000425428 FHDC1Q9C0D6 1143 aaPredicted RBP12.39□□□□□ -0.43
CD44-207ENST00000425428 IL1RAPL2Q9NP60 686 aa12.39□□□□□ -0.43
CD44-207ENST00000425428 GGA1Q9UJY5 639 aa12.39□□□□□ -0.43
CD44-207ENST00000425428 UBE4AQ14139 1066 aa12.38□□□□□ -0.43
CD44-207ENST00000425428 CCDC93Q567U6 631 aa12.38□□□□□ -0.43
CD44-207ENST00000425428 CCDC158Q5M9N0 1113 aa12.38□□□□□ -0.43
CD44-207ENST00000425428 ATG9AQ7Z3C6 839 aa12.38□□□□□ -0.43
CD44-207ENST00000425428 LPIN2Q92539 896 aa12.38□□□□□ -0.43
CD44-207ENST00000425428 LNPKQ9C0E8 428 aa12.38□□□□□ -0.43
CD44-207ENST00000425428 GNL3LQ9NVN8 582 aaKnown RBP12.38□□□□□ -0.43
CD44-207ENST00000425428 ZNF219Q9P2Y4 722 aaPredicted RBP12.38□□□□□ -0.43
CD44-207ENST00000425428 BCS1LQ9Y276 419 aa12.38□□□□□ -0.43
CD44-207ENST00000425428 KDM2BQ8NHM5 1336 aa12.38□□□□□ -0.43
CD44-207ENST00000425428 C6orf229H3BNL8 230 aa12.38□□□□□ -0.43
CD44-207ENST00000425428 ERC2O15083 957 aa12.38□□□□□ -0.43
CD44-207ENST00000425428 TNNI3KQ59H18 835 aa12.38□□□□□ -0.43
CD44-207ENST00000425428 PELP1Q8IZL8 1130 aaKnown RBP12.38□□□□□ -0.43
CD44-207ENST00000425428 FPGT-TNNI3KV9GXZ4 949 aa12.38□□□□□ -0.43
CD44-207ENST00000425428 SLX4Q8IY92 1834 aa12.37□□□□□ -0.43
CD44-207ENST00000425428 SASH1O94885 1247 aa12.37□□□□□ -0.43
CD44-207ENST00000425428 HELBQ8NG08 1087 aaPredicted RBP12.37□□□□□ -0.43
CD44-207ENST00000425428 ZNF804BA4D1E1 1349 aa12.37□□□□□ -0.43
CD44-207ENST00000425428 C21orf2O43822 256 aa12.36□□□□□ -0.43
CD44-207ENST00000425428 FRAT2O75474 233 aaPredicted RBP12.36□□□□□ -0.43
CD44-207ENST00000425428 TAF5LO75529 589 aa12.36□□□□□ -0.43
CD44-207ENST00000425428 UFL1O94874 794 aa12.36□□□□□ -0.43
CD44-207ENST00000425428 SYT17Q9BSW7 474 aa12.36□□□□□ -0.43
CD44-207ENST00000425428 ZC3H12CQ9C0D7 883 aaKnown RBP12.36□□□□□ -0.43
CD44-207ENST00000425428 A0A1B0GUL7 405 aa12.35□□□□□ -0.43
CD44-207ENST00000425428 SMARCA5O60264 1052 aaPredicted RBP12.35□□□□□ -0.43
CD44-207ENST00000425428 TTC39AQ5SRH9 613 aa12.35□□□□□ -0.43
CD44-207ENST00000425428 ZNF804AQ7Z570 1209 aa12.35□□□□□ -0.43
CD44-207ENST00000425428 PODXL2Q9NZ53 605 aa12.35□□□□□ -0.43
CD44-207ENST00000425428 LRP5O75197 1615 aa12.35□□□□□ -0.43
CD44-207ENST00000425428 BRCA1P38398 1863 aaKnown RBP12.34□□□□□ -0.43
CD44-207ENST00000425428 UQCRFS1P1P0C7P4 283 aa12.34□□□□□ -0.43
CD44-207ENST00000425428 MX1P20591 662 aa12.34□□□□□ -0.43
CD44-207ENST00000425428 TIMM10P62072 90 aa12.34□□□□□ -0.43
CD44-207ENST00000425428 GPSM2P81274 684 aa12.34□□□□□ -0.43
CD44-207ENST00000425428 WASHC4Q2M389 1173 aa12.34□□□□□ -0.43
CD44-207ENST00000425428 CCDC8Q9H0W5 538 aaPredicted RBP12.34□□□□□ -0.43
CD44-207ENST00000425428 VPS33BQ9H267 617 aa12.34□□□□□ -0.43
CD44-207ENST00000425428 LRRC37AA6NMS7 1700 aa12.34□□□□□ -0.43
CD44-207ENST00000425428 TTC41PQ6P2S7 1318 aa12.34□□□□□ -0.43
CD44-207ENST00000425428 ARFGEF1Q9Y6D6 1849 aa12.34□□□□□ -0.43
CD44-207ENST00000425428 KCNA3P22001 575 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms