RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 RABEP1Q15276 862 aa11.47□□□□□ -0.57
USP54-205ENST00000424265 ZSCAN25Q6NSZ9 544 aa11.47□□□□□ -0.57
USP54-205ENST00000424265 CHD1LQ86WJ1 897 aa11.47□□□□□ -0.57
USP54-205ENST00000424265 RPGRQ92834 1020 aaKnown RBP11.47□□□□□ -0.57
USP54-205ENST00000424265 ARGLU1Q9NWB6 273 aaPredicted RBP11.47□□□□□ -0.57
USP54-205ENST00000424265 TFCP2L1Q9NZI6 479 aa11.47□□□□□ -0.57
USP54-205ENST00000424265 LRRFIP2Q9Y608 721 aaKnown RBP11.47□□□□□ -0.57
USP54-205ENST00000424265 ZSCAN23Q3MJ62 389 aa11.47□□□□□ -0.57
USP54-205ENST00000424265 SART3Q15020 963 aaKnown RBP11.47□□□□□ -0.57
USP54-205ENST00000424265 FAM212AQ96EL1 285 aa11.47□□□□□ -0.57
USP54-205ENST00000424265 TBC1D32Q96NH3 1257 aa11.47□□□□□ -0.57
USP54-205ENST00000424265 CDC45O75419 566 aa11.47□□□□□ -0.57
USP54-205ENST00000424265 APBA3O96018 575 aa11.47□□□□□ -0.57
USP54-205ENST00000424265 TPM1P09493 284 aa11.47□□□□□ -0.57
USP54-205ENST00000424265 ZNF397Q8NF99 534 aaPredicted RBP11.47□□□□□ -0.57
USP54-205ENST00000424265 RILPL2Q969X0 211 aa11.47□□□□□ -0.57
USP54-205ENST00000424265 SUDS3Q9H7L9 328 aaPredicted RBP11.47□□□□□ -0.57
USP54-205ENST00000424265 PDZRN3Q9UPQ7 1066 aa11.47□□□□□ -0.57
USP54-205ENST00000424265 IFIT1P09914 478 aaKnown RBP11.46□□□□□ -0.57
USP54-205ENST00000424265 BMS1Q14692 1282 aaKnown RBP11.46□□□□□ -0.57
USP54-205ENST00000424265 BICDL1Q6ZP65 573 aa11.46□□□□□ -0.57
USP54-205ENST00000424265 ANKRD44Q8N8A2 993 aa11.46□□□□□ -0.57
USP54-205ENST00000424265 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.46□□□□□ -0.57
USP54-205ENST00000424265 C1orf115Q9H7X2 142 aa11.46□□□□□ -0.57
USP54-205ENST00000424265 AHDC1Q5TGY3 1603 aaPredicted RBP11.46□□□□□ -0.57
USP54-205ENST00000424265 SLC27A3Q5K4L6 730 aa11.46□□□□□ -0.57
USP54-205ENST00000424265 DDX46Q7L014 1031 aaKnown RBP11.46□□□□□ -0.57
USP54-205ENST00000424265 NIP7Q9Y221 180 aaKnown RBP eCLIP11.46□□□□□ -0.57
USP54-205ENST00000424265 TMEM132AQ24JP5 1023 aa11.46□□□□□ -0.58
USP54-205ENST00000424265 FNBP4Q8N3X1 1017 aaPredicted RBP11.46□□□□□ -0.58
USP54-205ENST00000424265 NLRP3Q96P20 1036 aa11.46□□□□□ -0.58
USP54-205ENST00000424265 PIK3C2AO00443 1686 aa11.46□□□□□ -0.58
USP54-205ENST00000424265 MNAT1P51948 309 aa11.46□□□□□ -0.58
USP54-205ENST00000424265 UBE3BQ7Z3V4 1068 aa11.46□□□□□ -0.58
USP54-205ENST00000424265 ATP8B2P98198 1209 aa11.45□□□□□ -0.58
USP54-205ENST00000424265 TTC39AQ5SRH9 613 aa11.45□□□□□ -0.58
USP54-205ENST00000424265 PALLDQ8WX93 1383 aa11.45□□□□□ -0.58
USP54-205ENST00000424265 NFAT5O94916 1531 aa11.45□□□□□ -0.58
USP54-205ENST00000424265 PHLPP1O60346 1717 aa11.45□□□□□ -0.58
USP54-205ENST00000424265 C20orf194Q5TEA3 1177 aa11.45□□□□□ -0.58
USP54-205ENST00000424265 RNF20Q5VTR2 975 aa11.45□□□□□ -0.58
USP54-205ENST00000424265 CPSF2Q9P2I0 782 aaKnown RBP11.45□□□□□ -0.58
USP54-205ENST00000424265 CEMIPQ8WUJ3 1361 aa11.45□□□□□ -0.58
USP54-205ENST00000424265 ABCC4O15439 1325 aa11.45□□□□□ -0.58
USP54-205ENST00000424265 POLD1P28340 1107 aa11.45□□□□□ -0.58
USP54-205ENST00000424265 KRT24Q2M2I5 525 aa11.45□□□□□ -0.58
USP54-205ENST00000424265 PARP3Q9Y6F1 533 aa11.45□□□□□ -0.58
USP54-205ENST00000424265 PIGBQ92521 554 aa11.45□□□□□ -0.58
USP54-205ENST00000424265 ERVV-1B6SEH8 477 aa11.44□□□□□ -0.58
USP54-205ENST00000424265 KIF3CO14782 793 aa11.44□□□□□ -0.58
USP54-205ENST00000424265 POLR3GO15318 223 aaPredicted RBP11.44□□□□□ -0.58
USP54-205ENST00000424265 GPTP24298 496 aa11.44□□□□□ -0.58
USP54-205ENST00000424265 RBSNQ9H1K0 784 aa11.44□□□□□ -0.58
USP54-205ENST00000424265 PPP1R12AO14974 1030 aaPredicted RBP11.44□□□□□ -0.58
USP54-205ENST00000424265 ANXA1P04083 346 aa11.44□□□□□ -0.58
USP54-205ENST00000424265 ADRA2BP18089 450 aa11.44□□□□□ -0.58
USP54-205ENST00000424265 METTL24Q5JXM2 366 aa11.44□□□□□ -0.58
USP54-205ENST00000424265 SLC5A1P13866 664 aa11.44□□□□□ -0.58
USP54-205ENST00000424265 TNS2Q63HR2 1409 aa11.44□□□□□ -0.58
USP54-205ENST00000424265 SH3TC1Q8TE82 1336 aa11.44□□□□□ -0.58
USP54-205ENST00000424265 ATP5J2-PTCD1G3V325 749 aa11.44□□□□□ -0.58
USP54-205ENST00000424265 MYO1CO00159 1063 aa11.44□□□□□ -0.58
USP54-205ENST00000424265 DDX41Q9UJV9 622 aaKnown RBP11.44□□□□□ -0.58
USP54-205ENST00000424265 GLRX3O76003 335 aaKnown RBP11.43□□□□□ -0.58
USP54-205ENST00000424265 ZKSCAN8Q15776 578 aaPredicted RBP11.43□□□□□ -0.58
USP54-205ENST00000424265 ROBO1Q9Y6N7 1651 aa11.43□□□□□ -0.58
USP54-205ENST00000424265 TRDNQ13061 729 aa11.43□□□□□ -0.58
USP54-205ENST00000424265 TCIRG1Q13488 830 aa11.43□□□□□ -0.58
USP54-205ENST00000424265 COL14A1Q05707 1796 aaKnown RBP11.43□□□□□ -0.58
USP54-205ENST00000424265 IL15P40933 162 aaPredicted RBP11.43□□□□□ -0.58
USP54-205ENST00000424265 SYT10Q6XYQ8 523 aa11.43□□□□□ -0.58
USP54-205ENST00000424265 NUCKS1Q9H1E3 243 aaKnown RBP11.43□□□□□ -0.58
USP54-205ENST00000424265 MAP3K15Q6ZN16 1313 aa11.43□□□□□ -0.58
USP54-205ENST00000424265 CCDC196A0A1B0GTZ2 297 aa11.43□□□□□ -0.58
USP54-205ENST00000424265 NUCB2P80303 420 aa11.43□□□□□ -0.58
USP54-205ENST00000424265 E2F4Q16254 413 aa11.43□□□□□ -0.58
USP54-205ENST00000424265 AP1ARQ63HQ0 302 aa11.43□□□□□ -0.58
USP54-205ENST00000424265 PHAXQ9H814 394 aaKnown RBP11.43□□□□□ -0.58
USP54-205ENST00000424265 ZBTB40Q9NUA8 1239 aa11.43□□□□□ -0.58
USP54-205ENST00000424265 IRF6O14896 467 aa11.43□□□□□ -0.58
USP54-205ENST00000424265 NEBLO76041 1014 aa11.43□□□□□ -0.58
USP54-205ENST00000424265 ZKSCAN1P17029 563 aaPredicted RBP11.43□□□□□ -0.58
USP54-205ENST00000424265 ZNF445P59923 1031 aa11.43□□□□□ -0.58
USP54-205ENST00000424265 CAVIN4Q5BKX8 364 aa11.43□□□□□ -0.58
USP54-205ENST00000424265 AACSQ86V21 672 aa11.43□□□□□ -0.58
USP54-205ENST00000424265 MED4Q9NPJ6 270 aa11.43□□□□□ -0.58
USP54-205ENST00000424265 SYCE3A1L190 88 aa11.42□□□□□ -0.58
USP54-205ENST00000424265 A1BGP04217 495 aa11.42□□□□□ -0.58
USP54-205ENST00000424265 NOP2P46087 812 aaKnown RBP11.42□□□□□ -0.58
USP54-205ENST00000424265 ASAP1Q9ULH1 1129 aa11.42□□□□□ -0.58
USP54-205ENST00000424265 KDM2BQ8NHM5 1336 aa11.42□□□□□ -0.58
USP54-205ENST00000424265 ARMCX6Q7L4S7 300 aa11.42□□□□□ -0.58
USP54-205ENST00000424265 PPM1EQ8WY54 764 aa11.42□□□□□ -0.58
USP54-205ENST00000424265 MEIS3Q99687 375 aa11.42□□□□□ -0.58
USP54-205ENST00000424265 KAT6BQ8WYB5 2073 aa11.42□□□□□ -0.58
USP54-205ENST00000424265 GYS2P54840 703 aa11.42□□□□□ -0.58
USP54-205ENST00000424265 TPD52L1Q16890 204 aaPredicted RBP11.42□□□□□ -0.58
USP54-205ENST00000424265 MORC2Q9Y6X9 1032 aaPredicted RBP11.42□□□□□ -0.58
USP54-205ENST00000424265 IVLP07476 585 aa11.41□□□□□ -0.58
USP54-205ENST00000424265 ATP2B1P20020 1258 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms