RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 FAM89AQ96GI7 184 aa21.92■■□□□ 1.1
CHCHD3-202ENST00000423635 ANKRD13DQ6ZTN6 518 aa21.91■■□□□ 1.1
CHCHD3-202ENST00000423635 CTU1Q7Z7A3 348 aaKnown RBP21.91■■□□□ 1.1
CHCHD3-202ENST00000423635 AKAP11Q9UKA4 1901 aa21.91■■□□□ 1.1
CHCHD3-202ENST00000423635 RPS8P62241 208 aaKnown RBP21.9■■□□□ 1.1
CHCHD3-202ENST00000423635 ZC3H12CQ9C0D7 883 aaKnown RBP21.9■■□□□ 1.1
CHCHD3-202ENST00000423635 GGA3Q9NZ52 723 aa21.9■■□□□ 1.1
CHCHD3-202ENST00000423635 PODXL2Q9NZ53 605 aa21.9■■□□□ 1.1
CHCHD3-202ENST00000423635 DDX60Q8IY21 1712 aaKnown RBP21.9■■□□□ 1.1
CHCHD3-202ENST00000423635 CHL1O00533 1208 aa21.89■■□□□ 1.1
CHCHD3-202ENST00000423635 TMPOP42166 694 aaKnown RBP21.89■■□□□ 1.1
CHCHD3-202ENST00000423635 LMOD3Q0VAK6 560 aa21.89■■□□□ 1.1
CHCHD3-202ENST00000423635 ZNF428Q96B54 188 aa21.89■■□□□ 1.1
CHCHD3-202ENST00000423635 CDCA5Q96FF9 252 aa21.89■■□□□ 1.1
CHCHD3-202ENST00000423635 ZNF280AP59817 542 aaPredicted RBP21.88■■□□□ 1.09
CHCHD3-202ENST00000423635 FKBP1BP68106 108 aa21.88■■□□□ 1.09
CHCHD3-202ENST00000423635 TRIM28Q13263 835 aaKnown RBP21.88■■□□□ 1.09
CHCHD3-202ENST00000423635 CHPF2Q9P2E5 772 aa21.88■■□□□ 1.09
CHCHD3-202ENST00000423635 ASTN2O75129 1339 aaPredicted RBP21.88■■□□□ 1.09
CHCHD3-202ENST00000423635 KRT24Q2M2I5 525 aa21.87■■□□□ 1.09
CHCHD3-202ENST00000423635 PRPF38BQ5VTL8 546 aaKnown RBP21.87■■□□□ 1.09
CHCHD3-202ENST00000423635 RASAL3Q86YV0 1011 aa21.87■■□□□ 1.09
CHCHD3-202ENST00000423635 ZNF609O15014 1411 aa21.87■■□□□ 1.09
CHCHD3-202ENST00000423635 ATP5J2-PTCD1G3V325 749 aa21.86■■□□□ 1.09
CHCHD3-202ENST00000423635 SCARF1Q14162 830 aa21.86■■□□□ 1.09
CHCHD3-202ENST00000423635 PKN2Q16513 984 aaKnown RBP21.86■■□□□ 1.09
CHCHD3-202ENST00000423635 AGBL3Q8NEM8 1001 aa21.86■■□□□ 1.09
CHCHD3-202ENST00000423635 COL4A1P02462 1669 aa21.86■■□□□ 1.09
CHCHD3-202ENST00000423635 IRS4O14654 1257 aaPredicted RBP21.85■■□□□ 1.09
CHCHD3-202ENST00000423635 ANGEL2Q5VTE6 544 aaKnown RBP21.85■■□□□ 1.09
CHCHD3-202ENST00000423635 DBF4Q9UBU7 674 aaPredicted RBP21.85■■□□□ 1.09
CHCHD3-202ENST00000423635 SCN9AQ15858 1988 aa21.85■■□□□ 1.09
CHCHD3-202ENST00000423635 HOXB7P09629 217 aa21.84■■□□□ 1.09
CHCHD3-202ENST00000423635 RSBN1LQ6PCB5 846 aaPredicted RBP21.84■■□□□ 1.09
CHCHD3-202ENST00000423635 HPS5Q9UPZ3 1129 aa21.84■■□□□ 1.09
CHCHD3-202ENST00000423635 HDGFL1Q5TGJ6 251 aa21.83■■□□□ 1.09
CHCHD3-202ENST00000423635 GMLQ99445 158 aa21.83■■□□□ 1.09
CHCHD3-202ENST00000423635 PITPNM2Q9BZ72 1349 aa21.82■■□□□ 1.08
CHCHD3-202ENST00000423635 G3V3G9 751 aa21.82■■□□□ 1.08
CHCHD3-202ENST00000423635 RTL5Q5HYW3 569 aaPredicted RBP21.82■■□□□ 1.08
CHCHD3-202ENST00000423635 DCAF8Q5TAQ9 597 aa21.82■■□□□ 1.08
CHCHD3-202ENST00000423635 HYPKQ9NX55 129 aa21.82■■□□□ 1.08
CHCHD3-202ENST00000423635 UFL1O94874 794 aa21.81■■□□□ 1.08
CHCHD3-202ENST00000423635 ZBTB38Q8NAP3 1195 aaPredicted RBP21.81■■□□□ 1.08
CHCHD3-202ENST00000423635 SEC31BQ9NQW1 1179 aa21.81■■□□□ 1.08
CHCHD3-202ENST00000423635 ANKIB1Q9P2G1 1089 aa21.81■■□□□ 1.08
CHCHD3-202ENST00000423635 GGA1Q9UJY5 639 aa21.81■■□□□ 1.08
CHCHD3-202ENST00000423635 HSP90B1P14625 803 aaKnown RBP21.8■■□□□ 1.08
CHCHD3-202ENST00000423635 NOM1Q5C9Z4 860 aaKnown RBP21.8■■□□□ 1.08
CHCHD3-202ENST00000423635 MYOZ2Q9NPC6 264 aa21.8■■□□□ 1.08
CHCHD3-202ENST00000423635 USP17L8P0C7I0 530 aa21.8■■□□□ 1.08
CHCHD3-202ENST00000423635 TM4SF4P48230 202 aa21.8■■□□□ 1.08
CHCHD3-202ENST00000423635 ZNF296Q8WUU4 475 aaPredicted RBP21.8■■□□□ 1.08
CHCHD3-202ENST00000423635 PAPPA2Q9BXP8 1791 aa21.79■■□□□ 1.08
CHCHD3-202ENST00000423635 PODNQ7Z5L7 613 aa21.79■■□□□ 1.08
CHCHD3-202ENST00000423635 HDAC9Q9UKV0 1011 aa21.79■■□□□ 1.08
CHCHD3-202ENST00000423635 TRIM35Q9UPQ4 493 aa21.79■■□□□ 1.08
CHCHD3-202ENST00000423635 TBC1D8O95759 1140 aa21.78■■□□□ 1.08
CHCHD3-202ENST00000423635 NEUROD2Q15784 382 aa21.78■■□□□ 1.08
CHCHD3-202ENST00000423635 LAS1LQ9Y4W2 734 aaKnown RBP21.78■■□□□ 1.08
CHCHD3-202ENST00000423635 USP17L3A6NCW0 530 aa21.77■■□□□ 1.07
CHCHD3-202ENST00000423635 USP17L4A6NCW7 530 aa21.77■■□□□ 1.07
CHCHD3-202ENST00000423635 UBE2Q2LH0YL09 131 aa21.77■■□□□ 1.07
CHCHD3-202ENST00000423635 MOB2Q70IA6 237 aa21.77■■□□□ 1.07
CHCHD3-202ENST00000423635 USP17L1Q7RTZ2 530 aa21.77■■□□□ 1.07
CHCHD3-202ENST00000423635 CCDC152Q4G0S7 254 aa21.76■■□□□ 1.07
CHCHD3-202ENST00000423635 PSME4Q14997 1843 aa21.75■■□□□ 1.07
CHCHD3-202ENST00000423635 GPR25O00155 361 aa21.75■■□□□ 1.07
CHCHD3-202ENST00000423635 PDE8AO60658 829 aa21.75■■□□□ 1.07
CHCHD3-202ENST00000423635 RIC3Q7Z5B4 369 aa21.75■■□□□ 1.07
CHCHD3-202ENST00000423635 CFHR5Q9BXR6 569 aa21.75■■□□□ 1.07
CHCHD3-202ENST00000423635 XDHP47989 1333 aa21.74■■□□□ 1.07
CHCHD3-202ENST00000423635 PCCAP05165 728 aaPredicted RBP21.74■■□□□ 1.07
CHCHD3-202ENST00000423635 ATP2B4P23634 1241 aa21.74■■□□□ 1.07
CHCHD3-202ENST00000423635 RALBP1Q15311 655 aa21.74■■□□□ 1.07
CHCHD3-202ENST00000423635 DUSP27Q5VZP5 1158 aa21.74■■□□□ 1.07
CHCHD3-202ENST00000423635 FBXO46Q6PJ61 603 aaPredicted RBP21.74■■□□□ 1.07
CHCHD3-202ENST00000423635 CCDC191Q8NCU4 936 aa21.74■■□□□ 1.07
CHCHD3-202ENST00000423635 NBPF9Q3BBW0 867 aa21.73■■□□□ 1.07
CHCHD3-202ENST00000423635 PRAMEF18Q5VWM3 479 aa21.73■■□□□ 1.07
CHCHD3-202ENST00000423635 SCAF8Q9UPN6 1271 aaKnown RBP21.73■■□□□ 1.07
CHCHD3-202ENST00000423635 GOLGA2Q08379 1002 aa21.72■■□□□ 1.07
CHCHD3-202ENST00000423635 ANKRD18AQ8IVF6 992 aa21.72■■□□□ 1.07
CHCHD3-202ENST00000423635 CCDC146Q8IYE0 955 aa21.72■■□□□ 1.07
CHCHD3-202ENST00000423635 RUNDC1Q96C34 613 aa21.72■■□□□ 1.07
CHCHD3-202ENST00000423635 PHAXQ9H814 394 aaKnown RBP21.71■■□□□ 1.07
CHCHD3-202ENST00000423635 WNT10BO00744 389 aa21.7■■□□□ 1.06
CHCHD3-202ENST00000423635 MMP14P50281 582 aa21.7■■□□□ 1.06
CHCHD3-202ENST00000423635 SREBF2Q12772 1141 aa21.7■■□□□ 1.06
CHCHD3-202ENST00000423635 DACT2Q5SW24 774 aa21.7■■□□□ 1.06
CHCHD3-202ENST00000423635 MYD88Q99836 296 aa21.7■■□□□ 1.06
CHCHD3-202ENST00000423635 NF2P35240 595 aa21.69■■□□□ 1.06
CHCHD3-202ENST00000423635 TTLL12Q14166 644 aaPredicted RBP21.69■■□□□ 1.06
CHCHD3-202ENST00000423635 OGFOD1Q8N543 542 aa21.69■■□□□ 1.06
CHCHD3-202ENST00000423635 CCDC85AQ96PX6 553 aaPredicted RBP21.69■■□□□ 1.06
CHCHD3-202ENST00000423635 WTIPA6NIX2 430 aaPredicted RBP21.68■■□□□ 1.06
CHCHD3-202ENST00000423635 FKTNO75072 461 aa21.68■■□□□ 1.06
CHCHD3-202ENST00000423635 GCC1Q96CN9 775 aa21.68■■□□□ 1.06
CHCHD3-202ENST00000423635 MBIPQ9NS73 344 aa21.68■■□□□ 1.06
CHCHD3-202ENST00000423635 CWC25Q9NXE8 425 aaPredicted RBP21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms