RNA–Protein interactions for RNA: ENST00000422544.2

PDGFC-202, Transcript of platelet derived growth factor C, humanhuman

TSL 5 BASIC

Gene PDGFC, Length 849 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-202ENST00000422544 ZNF594Q96JF6 807 aaPredicted RBP11.6□□□□□ -0.55
PDGFC-202ENST00000422544 TMX4Q9H1E5 349 aaPredicted RBP11.6□□□□□ -0.55
PDGFC-202ENST00000422544 TNRC18O15417 2968 aaPredicted RBP11.59□□□□□ -0.55
PDGFC-202ENST00000422544 CCDC93Q567U6 631 aa11.59□□□□□ -0.55
PDGFC-202ENST00000422544 TAF7LQ5H9L4 462 aa11.59□□□□□ -0.55
PDGFC-202ENST00000422544 SOGA3Q5TF21 947 aa11.59□□□□□ -0.55
PDGFC-202ENST00000422544 TMC4Q7Z404 712 aa11.59□□□□□ -0.55
PDGFC-202ENST00000422544 KLHDC4Q8TBB5 520 aa11.59□□□□□ -0.55
PDGFC-202ENST00000422544 CRBNQ96SW2 442 aa11.59□□□□□ -0.55
PDGFC-202ENST00000422544 MPHOSPH8Q99549 860 aa11.59□□□□□ -0.55
PDGFC-202ENST00000422544 ZBTB40Q9NUA8 1239 aa11.59□□□□□ -0.55
PDGFC-202ENST00000422544 BSDC1Q9NW68 430 aaPredicted RBP11.59□□□□□ -0.55
PDGFC-202ENST00000422544 SLX4Q8IY92 1834 aa11.58□□□□□ -0.56
PDGFC-202ENST00000422544 NFKBIEO00221 500 aa11.58□□□□□ -0.56
PDGFC-202ENST00000422544 CAPN15O75808 1086 aa11.58□□□□□ -0.56
PDGFC-202ENST00000422544 RFX5P48382 616 aaPredicted RBP11.58□□□□□ -0.56
PDGFC-202ENST00000422544 PRELPP51888 382 aa11.58□□□□□ -0.56
PDGFC-202ENST00000422544 CC2D2BQ6DHV5 1058 aa11.58□□□□□ -0.56
PDGFC-202ENST00000422544 RTKN2Q8IZC4 609 aa11.58□□□□□ -0.56
PDGFC-202ENST00000422544 CHMP4BQ9H444 224 aaKnown RBP11.58□□□□□ -0.56
PDGFC-202ENST00000422544 DLEC1Q9Y238 1755 aa11.58□□□□□ -0.56
PDGFC-202ENST00000422544 COL4A1P02462 1669 aa11.57□□□□□ -0.56
PDGFC-202ENST00000422544 PNMA6EA0A0J9YXQ4 647 aa11.57□□□□□ -0.56
PDGFC-202ENST00000422544 SRGAP3O43295 1099 aa11.57□□□□□ -0.56
PDGFC-202ENST00000422544 GPSM2P81274 684 aa11.57□□□□□ -0.56
PDGFC-202ENST00000422544 ATP8B2P98198 1209 aa11.57□□□□□ -0.56
PDGFC-202ENST00000422544 RASSF7Q02833 373 aa11.57□□□□□ -0.56
PDGFC-202ENST00000422544 MTX1Q13505 466 aa11.57□□□□□ -0.56
PDGFC-202ENST00000422544 LDHAL6AQ6ZMR3 332 aa11.57□□□□□ -0.56
PDGFC-202ENST00000422544 MPNDQ8N594 471 aa11.57□□□□□ -0.56
PDGFC-202ENST00000422544 RBM46Q8TBY0 533 aaKnown RBP11.57□□□□□ -0.56
PDGFC-202ENST00000422544 PUS3Q9BZE2 481 aaKnown RBP11.57□□□□□ -0.56
PDGFC-202ENST00000422544 CNNM1Q9NRU3 951 aa11.57□□□□□ -0.56
PDGFC-202ENST00000422544 MINPP1Q9UNW1 487 aa11.57□□□□□ -0.56
PDGFC-202ENST00000422544 NSFL1CQ9UNZ2 370 aaKnown RBP11.57□□□□□ -0.56
PDGFC-202ENST00000422544 LAMB2P55268 1798 aa11.56□□□□□ -0.56
PDGFC-202ENST00000422544 DICER1Q9UPY3 1922 aaKnown RBP11.56□□□□□ -0.56
PDGFC-202ENST00000422544 FKBP4Q02790 459 aaKnown RBP eCLIP11.56□□□□□ -0.56
PDGFC-202ENST00000422544 PTPN12Q05209 780 aaKnown RBP11.56□□□□□ -0.56
PDGFC-202ENST00000422544 GRIPAP1Q4V328 841 aa11.56□□□□□ -0.56
PDGFC-202ENST00000422544 DPP8Q6V1X1 898 aaPredicted RBP11.56□□□□□ -0.56
PDGFC-202ENST00000422544 TIAM2Q8IVF5 1701 aa11.56□□□□□ -0.56
PDGFC-202ENST00000422544 TAOK3Q9H2K8 898 aa11.56□□□□□ -0.56
PDGFC-202ENST00000422544 ANKIB1Q9P2G1 1089 aa11.56□□□□□ -0.56
PDGFC-202ENST00000422544 PA2G4Q9UQ80 394 aaKnown RBP11.56□□□□□ -0.56
PDGFC-202ENST00000422544 WTIPA6NIX2 430 aaPredicted RBP11.55□□□□□ -0.56
PDGFC-202ENST00000422544 IRX6P78412 446 aaPredicted RBP11.55□□□□□ -0.56
PDGFC-202ENST00000422544 CHRNDQ07001 517 aa11.55□□□□□ -0.56
PDGFC-202ENST00000422544 LRRC24Q50LG9 513 aa11.55□□□□□ -0.56
PDGFC-202ENST00000422544 CEP85Q6P2H3 762 aa11.55□□□□□ -0.56
PDGFC-202ENST00000422544 SAMD1Q6SPF0 538 aaPredicted RBP11.55□□□□□ -0.56
PDGFC-202ENST00000422544 HELBQ8NG08 1087 aaPredicted RBP11.55□□□□□ -0.56
PDGFC-202ENST00000422544 PSMD1Q99460 953 aa11.55□□□□□ -0.56
PDGFC-202ENST00000422544 SIL1Q9H173 461 aa11.55□□□□□ -0.56
PDGFC-202ENST00000422544 ZNF277Q9NRM2 450 aaPredicted RBP11.55□□□□□ -0.56
PDGFC-202ENST00000422544 POLLQ9UGP5 575 aa11.55□□□□□ -0.56
PDGFC-202ENST00000422544 RIPOR2Q9Y4F9 1068 aa11.55□□□□□ -0.56
PDGFC-202ENST00000422544 TAF1P21675 1872 aa11.55□□□□□ -0.56
PDGFC-202ENST00000422544 C6orf229H3BNL8 230 aa11.54□□□□□ -0.56
PDGFC-202ENST00000422544 EYA2O00167 538 aa11.54□□□□□ -0.56
PDGFC-202ENST00000422544 TAF5LO75529 589 aa11.54□□□□□ -0.56
PDGFC-202ENST00000422544 CENPBP07199 599 aaPredicted RBP11.54□□□□□ -0.56
PDGFC-202ENST00000422544 POLA2Q14181 598 aa11.54□□□□□ -0.56
PDGFC-202ENST00000422544 EXOC6Q8TAG9 804 aa11.54□□□□□ -0.56
PDGFC-202ENST00000422544 TBC1D16Q8TBP0 767 aa11.54□□□□□ -0.56
PDGFC-202ENST00000422544 GPR101Q96P66 508 aaPredicted RBP11.54□□□□□ -0.56
PDGFC-202ENST00000422544 RTFDC1Q9BY42 306 aaPredicted RBP11.54□□□□□ -0.56
PDGFC-202ENST00000422544 ANKRD2Q9GZV1 360 aa11.54□□□□□ -0.56
PDGFC-202ENST00000422544 COPRSQ9NQ92 184 aa11.54□□□□□ -0.56
PDGFC-202ENST00000422544 PODXL2Q9NZ53 605 aa11.54□□□□□ -0.56
PDGFC-202ENST00000422544 GGA1Q9UJY5 639 aa11.54□□□□□ -0.56
PDGFC-202ENST00000422544 SNED1Q8TER0 1413 aa11.53□□□□□ -0.56
PDGFC-202ENST00000422544 SNAP23O00161 211 aa11.53□□□□□ -0.56
PDGFC-202ENST00000422544 UFL1O94874 794 aa11.53□□□□□ -0.56
PDGFC-202ENST00000422544 LMNB1P20700 586 aa11.53□□□□□ -0.56
PDGFC-202ENST00000422544 ATP2B4P23634 1241 aa11.53□□□□□ -0.56
PDGFC-202ENST00000422544 METTL24Q5JXM2 366 aa11.53□□□□□ -0.56
PDGFC-202ENST00000422544 C9orf131Q5VYM1 1079 aa11.53□□□□□ -0.56
PDGFC-202ENST00000422544 SIRT2Q8IXJ6 389 aa11.53□□□□□ -0.56
PDGFC-202ENST00000422544 RPAP2Q8IXW5 612 aaPredicted RBP11.53□□□□□ -0.56
PDGFC-202ENST00000422544 SUPT20HQ8NEM7 779 aa11.53□□□□□ -0.56
PDGFC-202ENST00000422544 SSH3Q8TE77 659 aa11.53□□□□□ -0.56
PDGFC-202ENST00000422544 RNF181Q9P0P0 153 aa11.53□□□□□ -0.56
PDGFC-202ENST00000422544 XDHP47989 1333 aa11.53□□□□□ -0.56
PDGFC-202ENST00000422544 LTBP3Q9NS15 1303 aa11.53□□□□□ -0.56
PDGFC-202ENST00000422544 RIMBP2O15034 1052 aa11.52□□□□□ -0.57
PDGFC-202ENST00000422544 CIAO1O76071 339 aa11.52□□□□□ -0.57
PDGFC-202ENST00000422544 IARSP41252 1262 aaKnown RBP11.52□□□□□ -0.57
PDGFC-202ENST00000422544 AOC3Q16853 763 aa11.52□□□□□ -0.57
PDGFC-202ENST00000422544 ATG9AQ7Z3C6 839 aa11.52□□□□□ -0.57
PDGFC-202ENST00000422544 TNS4Q8IZW8 715 aa11.52□□□□□ -0.57
PDGFC-202ENST00000422544 LEMD3Q9Y2U8 911 aa11.52□□□□□ -0.57
PDGFC-202ENST00000422544 PCDHB15Q9Y5E8 787 aa11.52□□□□□ -0.57
PDGFC-202ENST00000422544 MROH5Q6ZUA9 1318 aa11.52□□□□□ -0.57
PDGFC-202ENST00000422544 MYH3P11055 1940 aa11.51□□□□□ -0.57
PDGFC-202ENST00000422544 PPIP5K2O43314 1243 aa11.51□□□□□ -0.57
PDGFC-202ENST00000422544 SURF6O75683 361 aaKnown RBP11.51□□□□□ -0.57
PDGFC-202ENST00000422544 IL15P40933 162 aaPredicted RBP11.51□□□□□ -0.57
PDGFC-202ENST00000422544 KCNJ4P48050 445 aa11.51□□□□□ -0.57
PDGFC-202ENST00000422544 G3BP1Q13283 466 aaKnown RBP eCLIP11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms