RNA–Protein interactions for RNA: ENST00000420503.1

LINC00339-203, long intergenic non-protein coding RNA 339, humanhuman

TSL 3

Gene LINC00339, Length 771 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-203ENST00000420503 ELL2O00472 640 aaPredicted RBP16.79■□□□□ 0.28
LINC00339-203ENST00000420503 RUNDC1Q96C34 613 aa16.79■□□□□ 0.28
LINC00339-203ENST00000420503 HHIPL1Q96JK4 782 aa16.79■□□□□ 0.28
LINC00339-203ENST00000420503 CFAP44Q96MT7 982 aa16.79■□□□□ 0.28
LINC00339-203ENST00000420503 DPF2Q92785 391 aa16.78■□□□□ 0.28
LINC00339-203ENST00000420503 GGA3Q9NZ52 723 aa16.78■□□□□ 0.28
LINC00339-203ENST00000420503 DBF4Q9UBU7 674 aaPredicted RBP16.78■□□□□ 0.28
LINC00339-203ENST00000420503 RPS8P62241 208 aaKnown RBP16.77■□□□□ 0.28
LINC00339-203ENST00000420503 DGKZQ13574 1117 aa16.77■□□□□ 0.28
LINC00339-203ENST00000420503 KIF4BQ2VIQ3 1234 aa16.77■□□□□ 0.28
LINC00339-203ENST00000420503 TMC4Q7Z404 712 aa16.77■□□□□ 0.28
LINC00339-203ENST00000420503 MYD88Q99836 296 aa16.77■□□□□ 0.28
LINC00339-203ENST00000420503 GBA2Q9HCG7 927 aaPredicted RBP16.77■□□□□ 0.28
LINC00339-203ENST00000420503 UFL1O94874 794 aa16.76■□□□□ 0.27
LINC00339-203ENST00000420503 POTEDQ86YR6 584 aa16.76■□□□□ 0.27
LINC00339-203ENST00000420503 HOXB7P09629 217 aa16.75■□□□□ 0.27
LINC00339-203ENST00000420503 KIF23Q02241 960 aaPredicted RBP16.75■□□□□ 0.27
LINC00339-203ENST00000420503 MLLT1Q03111 559 aaPredicted RBP16.75■□□□□ 0.27
LINC00339-203ENST00000420503 NOGQ13253 232 aa16.75■□□□□ 0.27
LINC00339-203ENST00000420503 RGMBQ6NW40 437 aa16.75■□□□□ 0.27
LINC00339-203ENST00000420503 HYPKQ9NX55 129 aa16.75■□□□□ 0.27
LINC00339-203ENST00000420503 SPEF2Q9C093 1822 aa16.75■□□□□ 0.27
LINC00339-203ENST00000420503 VIL1P09327 827 aaKnown RBP16.74■□□□□ 0.27
LINC00339-203ENST00000420503 ZNF853P0CG23 659 aa16.74■□□□□ 0.27
LINC00339-203ENST00000420503 RGS19P49795 217 aa16.74■□□□□ 0.27
LINC00339-203ENST00000420503 WDR43Q15061 677 aaKnown RBP eCLIP16.74■□□□□ 0.27
LINC00339-203ENST00000420503 MOB2Q70IA6 237 aa16.74■□□□□ 0.27
LINC00339-203ENST00000420503 RIC3Q7Z5B4 369 aa16.74■□□□□ 0.27
LINC00339-203ENST00000420503 C8orf58Q8NAV2 365 aa16.74■□□□□ 0.27
LINC00339-203ENST00000420503 CDCA5Q96FF9 252 aa16.74■□□□□ 0.27
LINC00339-203ENST00000420503 PSME4Q14997 1843 aa16.73■□□□□ 0.27
LINC00339-203ENST00000420503 CA12O43570 354 aa16.73■□□□□ 0.27
LINC00339-203ENST00000420503 SLC34A2O95436 690 aa16.73■□□□□ 0.27
LINC00339-203ENST00000420503 RPS12P25398 132 aaKnown RBP16.73■□□□□ 0.27
LINC00339-203ENST00000420503 TRIM28Q13263 835 aaKnown RBP16.73■□□□□ 0.27
LINC00339-203ENST00000420503 ZBTB38Q8NAP3 1195 aaPredicted RBP16.73■□□□□ 0.27
LINC00339-203ENST00000420503 DCPSQ96C86 337 aaKnown RBP16.73■□□□□ 0.27
LINC00339-203ENST00000420503 MXD3Q9BW11 206 aa16.73■□□□□ 0.27
LINC00339-203ENST00000420503 ZNF646O15015 1829 aaPredicted RBP16.73■□□□□ 0.27
LINC00339-203ENST00000420503 PDE4DIPQ5VU43 2346 aa16.72■□□□□ 0.27
LINC00339-203ENST00000420503 APAF1O14727 1248 aa16.72■□□□□ 0.27
LINC00339-203ENST00000420503 ZNF157P51786 506 aaPredicted RBP16.72■□□□□ 0.27
LINC00339-203ENST00000420503 ANGEL2Q5VTE6 544 aaKnown RBP16.72■□□□□ 0.27
LINC00339-203ENST00000420503 PRAMEF18Q5VWM3 479 aa16.72■□□□□ 0.27
LINC00339-203ENST00000420503 EYA3Q99504 573 aa16.72■□□□□ 0.27
LINC00339-203ENST00000420503 RNF186Q9NXI6 227 aa16.72■□□□□ 0.27
LINC00339-203ENST00000420503 PODXL2Q9NZ53 605 aa16.72■□□□□ 0.27
LINC00339-203ENST00000420503 ANKIB1Q9P2G1 1089 aa16.72■□□□□ 0.27
LINC00339-203ENST00000420503 TRPA1O75762 1119 aa16.71■□□□□ 0.27
LINC00339-203ENST00000420503 SLC10A3P09131 477 aa16.71■□□□□ 0.27
LINC00339-203ENST00000420503 GOLGA2Q08379 1002 aa16.71■□□□□ 0.27
LINC00339-203ENST00000420503 SCARF1Q14162 830 aa16.71■□□□□ 0.27
LINC00339-203ENST00000420503 TSPYL6Q8N831 410 aa16.71■□□□□ 0.27
LINC00339-203ENST00000420503 C2orf69Q8N8R5 385 aa16.71■□□□□ 0.27
LINC00339-203ENST00000420503 ZC3H12CQ9C0D7 883 aaKnown RBP16.71■□□□□ 0.27
LINC00339-203ENST00000420503 GGA1Q9UJY5 639 aa16.71■□□□□ 0.27
LINC00339-203ENST00000420503 AKAP11Q9UKA4 1901 aa16.7■□□□□ 0.26
LINC00339-203ENST00000420503 SOX10P56693 466 aa16.7■□□□□ 0.26
LINC00339-203ENST00000420503 ZNF280AP59817 542 aaPredicted RBP16.7■□□□□ 0.26
LINC00339-203ENST00000420503 RSBN1LQ6PCB5 846 aaPredicted RBP16.7■□□□□ 0.26
LINC00339-203ENST00000420503 CSRNP1Q96S65 589 aa16.7■□□□□ 0.26
LINC00339-203ENST00000420503 GMLQ99445 158 aa16.7■□□□□ 0.26
LINC00339-203ENST00000420503 TNRC18O15417 2968 aaPredicted RBP16.7■□□□□ 0.26
LINC00339-203ENST00000420503 PCCAP05165 728 aaPredicted RBP16.69■□□□□ 0.26
LINC00339-203ENST00000420503 RASAL3Q86YV0 1011 aa16.69■□□□□ 0.26
LINC00339-203ENST00000420503 SULF1Q8IWU6 871 aa16.69■□□□□ 0.26
LINC00339-203ENST00000420503 CWC25Q9NXE8 425 aaPredicted RBP16.68■□□□□ 0.26
LINC00339-203ENST00000420503 G3V3G9 751 aa16.67■□□□□ 0.26
LINC00339-203ENST00000420503 PDE8AO60658 829 aa16.67■□□□□ 0.26
LINC00339-203ENST00000420503 IGKV5-2P06315 115 aa16.67■□□□□ 0.26
LINC00339-203ENST00000420503 KLRK1P26718 216 aa16.67■□□□□ 0.26
LINC00339-203ENST00000420503 CCDC152Q4G0S7 254 aa16.67■□□□□ 0.26
LINC00339-203ENST00000420503 DCAF8Q5TAQ9 597 aa16.67■□□□□ 0.26
LINC00339-203ENST00000420503 TXNRD3Q86VQ6 643 aa16.67■□□□□ 0.26
LINC00339-203ENST00000420503 CCDC191Q8NCU4 936 aa16.67■□□□□ 0.26
LINC00339-203ENST00000420503 METTL22Q9BUU2 404 aaPredicted RBP16.67■□□□□ 0.26
LINC00339-203ENST00000420503 IFT57Q9NWB7 429 aa16.67■□□□□ 0.26
LINC00339-203ENST00000420503 MAP3K2Q9Y2U5 619 aa16.67■□□□□ 0.26
LINC00339-203ENST00000420503 ZNF609O15014 1411 aa16.66■□□□□ 0.26
LINC00339-203ENST00000420503 CWF19L2Q2TBE0 894 aaKnown RBP16.66■□□□□ 0.26
LINC00339-203ENST00000420503 NBPF9Q3BBW0 867 aa16.66■□□□□ 0.26
LINC00339-203ENST00000420503 TSR2Q969E8 191 aaKnown RBP16.66■□□□□ 0.26
LINC00339-203ENST00000420503 CCDC102AQ96A19 550 aa16.66■□□□□ 0.26
LINC00339-203ENST00000420503 GREM2Q9H772 168 aa16.66■□□□□ 0.26
LINC00339-203ENST00000420503 MYOZ2Q9NPC6 264 aa16.66■□□□□ 0.26
LINC00339-203ENST00000420503 PAPPA2Q9BXP8 1791 aa16.66■□□□□ 0.26
LINC00339-203ENST00000420503 XDHP47989 1333 aa16.66■□□□□ 0.26
LINC00339-203ENST00000420503 MYH3P11055 1940 aa16.65■□□□□ 0.26
LINC00339-203ENST00000420503 UBE2Q2LH0YL09 131 aa16.65■□□□□ 0.26
LINC00339-203ENST00000420503 USP17L8P0C7I0 530 aa16.65■□□□□ 0.26
LINC00339-203ENST00000420503 CTSWP56202 376 aa16.65■□□□□ 0.26
LINC00339-203ENST00000420503 CCDC184Q52MB2 194 aa16.65■□□□□ 0.26
LINC00339-203ENST00000420503 G2E3Q7L622 706 aa16.65■□□□□ 0.26
LINC00339-203ENST00000420503 ANKRD18AQ8IVF6 992 aa16.65■□□□□ 0.26
LINC00339-203ENST00000420503 AGBL3Q8NEM8 1001 aa16.65■□□□□ 0.26
LINC00339-203ENST00000420503 PRKRIP1Q9H875 184 aaPredicted RBP16.65■□□□□ 0.26
LINC00339-203ENST00000420503 SAGE1Q9NXZ1 904 aa16.65■□□□□ 0.26
LINC00339-203ENST00000420503 GNAI1P63096 354 aa16.64■□□□□ 0.25
LINC00339-203ENST00000420503 MKRN3Q13064 507 aaKnown RBP16.64■□□□□ 0.25
LINC00339-203ENST00000420503 TTLL11Q8NHH1 800 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms