RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 TMC4Q7Z404 712 aa10.49□□□□□ -0.73
TRIM48-201ENST00000417545 REM2Q8IYK8 340 aaPredicted RBP10.49□□□□□ -0.73
TRIM48-201ENST00000417545 CELF1Q92879 486 aaKnown RBP10.49□□□□□ -0.73
TRIM48-201ENST00000417545 ZNF594Q96JF6 807 aaPredicted RBP10.49□□□□□ -0.73
TRIM48-201ENST00000417545 BCS1LQ9Y276 419 aa10.49□□□□□ -0.73
TRIM48-201ENST00000417545 KIAA1551Q9HCM1 1747 aa10.48□□□□□ -0.73
TRIM48-201ENST00000417545 KLRG2A4D1S0 409 aaPredicted RBP10.48□□□□□ -0.73
TRIM48-201ENST00000417545 APBB1O00213 710 aa10.48□□□□□ -0.73
TRIM48-201ENST00000417545 BBOX1O75936 387 aa10.48□□□□□ -0.73
TRIM48-201ENST00000417545 HOXA10P31260 410 aaPredicted RBP10.48□□□□□ -0.73
TRIM48-201ENST00000417545 METTL24Q5JXM2 366 aa10.48□□□□□ -0.73
TRIM48-201ENST00000417545 SOGA3Q5TF21 947 aa10.48□□□□□ -0.73
TRIM48-201ENST00000417545 PRPF40BQ6NWY9 871 aaKnown RBP10.48□□□□□ -0.73
TRIM48-201ENST00000417545 NLGN2Q8NFZ4 835 aa10.48□□□□□ -0.73
TRIM48-201ENST00000417545 KLHDC4Q8TBB5 520 aa10.48□□□□□ -0.73
TRIM48-201ENST00000417545 SSH3Q8TE77 659 aa10.48□□□□□ -0.73
TRIM48-201ENST00000417545 ANKIB1Q9P2G1 1089 aa10.48□□□□□ -0.73
TRIM48-201ENST00000417545 PA2G4Q9UQ80 394 aaKnown RBP10.48□□□□□ -0.73
TRIM48-201ENST00000417545 BRCA1P38398 1863 aaKnown RBP10.47□□□□□ -0.73
TRIM48-201ENST00000417545 ERC1Q8IUD2 1116 aa10.47□□□□□ -0.73
TRIM48-201ENST00000417545 SYT17Q9BSW7 474 aa10.47□□□□□ -0.73
TRIM48-201ENST00000417545 EXOC6BQ9Y2D4 811 aa10.47□□□□□ -0.73
TRIM48-201ENST00000417545 PCDHB15Q9Y5E8 787 aa10.47□□□□□ -0.73
TRIM48-201ENST00000417545 SLX4Q8IY92 1834 aa10.46□□□□□ -0.73
TRIM48-201ENST00000417545 MROH5Q6ZUA9 1318 aa10.46□□□□□ -0.73
TRIM48-201ENST00000417545 EYA2O00167 538 aa10.46□□□□□ -0.74
TRIM48-201ENST00000417545 C21orf2O43822 256 aa10.46□□□□□ -0.74
TRIM48-201ENST00000417545 IL15P40933 162 aaPredicted RBP10.46□□□□□ -0.74
TRIM48-201ENST00000417545 PTPN12Q05209 780 aaKnown RBP10.46□□□□□ -0.74
TRIM48-201ENST00000417545 ANKRD2Q9GZV1 360 aa10.46□□□□□ -0.74
TRIM48-201ENST00000417545 COPRSQ9NQ92 184 aa10.46□□□□□ -0.74
TRIM48-201ENST00000417545 BSDC1Q9NW68 430 aaPredicted RBP10.46□□□□□ -0.74
TRIM48-201ENST00000417545 PPP4R2Q9NY27 417 aa10.46□□□□□ -0.74
TRIM48-201ENST00000417545 CEP126Q9P2H0 1117 aa10.46□□□□□ -0.74
TRIM48-201ENST00000417545 FBXO3Q9UK99 471 aa10.46□□□□□ -0.74
TRIM48-201ENST00000417545 ARFGEF1Q9Y6D6 1849 aa10.45□□□□□ -0.74
TRIM48-201ENST00000417545 RAB11FIP3O75154 756 aa10.45□□□□□ -0.74
TRIM48-201ENST00000417545 GPR162Q16538 588 aa10.45□□□□□ -0.74
TRIM48-201ENST00000417545 CCDC93Q567U6 631 aa10.45□□□□□ -0.74
TRIM48-201ENST00000417545 CC2D2BQ6DHV5 1058 aa10.45□□□□□ -0.74
TRIM48-201ENST00000417545 DPP8Q6V1X1 898 aaPredicted RBP10.45□□□□□ -0.74
TRIM48-201ENST00000417545 SP8Q8IXZ3 490 aa10.45□□□□□ -0.74
TRIM48-201ENST00000417545 GCC1Q96CN9 775 aa10.45□□□□□ -0.74
TRIM48-201ENST00000417545 ATP6V0A2Q9Y487 856 aa10.45□□□□□ -0.74
TRIM48-201ENST00000417545 LRRC37AA6NMS7 1700 aa10.45□□□□□ -0.74
TRIM48-201ENST00000417545 A0A1B0GUL6 1792 aa10.44□□□□□ -0.74
TRIM48-201ENST00000417545 G3V3G9 751 aa10.44□□□□□ -0.74
TRIM48-201ENST00000417545 C6orf229H3BNL8 230 aa10.44□□□□□ -0.74
TRIM48-201ENST00000417545 CIAO1O76071 339 aa10.44□□□□□ -0.74
TRIM48-201ENST00000417545 RFX5P48382 616 aaPredicted RBP10.44□□□□□ -0.74
TRIM48-201ENST00000417545 CHRNDQ07001 517 aa10.44□□□□□ -0.74
TRIM48-201ENST00000417545 HDAC1Q13547 482 aaPredicted RBP10.44□□□□□ -0.74
TRIM48-201ENST00000417545 GRIPAP1Q4V328 841 aa10.44□□□□□ -0.74
TRIM48-201ENST00000417545 LRRC24Q50LG9 513 aa10.44□□□□□ -0.74
TRIM48-201ENST00000417545 DCAF8Q5TAQ9 597 aa10.44□□□□□ -0.74
TRIM48-201ENST00000417545 MPNDQ8N594 471 aa10.44□□□□□ -0.74
TRIM48-201ENST00000417545 NSFL1CQ9UNZ2 370 aaKnown RBP10.44□□□□□ -0.74
TRIM48-201ENST00000417545 AKAP2Q9Y2D5 859 aa10.44□□□□□ -0.74
TRIM48-201ENST00000417545 XDHP47989 1333 aa10.44□□□□□ -0.74
TRIM48-201ENST00000417545 GORABQ5T7V8 394 aa10.43□□□□□ -0.74
TRIM48-201ENST00000417545 SIRT2Q8IXJ6 389 aa10.43□□□□□ -0.74
TRIM48-201ENST00000417545 RTKN2Q8IZC4 609 aa10.43□□□□□ -0.74
TRIM48-201ENST00000417545 SUPT20HQ8NEM7 779 aa10.43□□□□□ -0.74
TRIM48-201ENST00000417545 HELBQ8NG08 1087 aaPredicted RBP10.43□□□□□ -0.74
TRIM48-201ENST00000417545 KIF1BPQ96EK5 621 aa10.43□□□□□ -0.74
TRIM48-201ENST00000417545 EYA3Q99504 573 aa10.43□□□□□ -0.74
TRIM48-201ENST00000417545 PUS3Q9BZE2 481 aaKnown RBP10.43□□□□□ -0.74
TRIM48-201ENST00000417545 LRRCC1Q9C099 1032 aa10.43□□□□□ -0.74
TRIM48-201ENST00000417545 GGA1Q9UJY5 639 aa10.43□□□□□ -0.74
TRIM48-201ENST00000417545 MINPP1Q9UNW1 487 aa10.43□□□□□ -0.74
TRIM48-201ENST00000417545 GTF3C3Q9Y5Q9 886 aa10.43□□□□□ -0.74
TRIM48-201ENST00000417545 UFL1O94874 794 aa10.42□□□□□ -0.74
TRIM48-201ENST00000417545 IFIT1P09914 478 aaKnown RBP10.42□□□□□ -0.74
TRIM48-201ENST00000417545 SLC5A1P13866 664 aa10.42□□□□□ -0.74
TRIM48-201ENST00000417545 KCNA3P22001 575 aa10.42□□□□□ -0.74
TRIM48-201ENST00000417545 ATP2B4P23634 1241 aa10.42□□□□□ -0.74
TRIM48-201ENST00000417545 TFCP2Q12800 502 aa10.42□□□□□ -0.74
TRIM48-201ENST00000417545 ATP2B3Q16720 1220 aa10.42□□□□□ -0.74
TRIM48-201ENST00000417545 ANKRD45Q5TZF3 282 aa10.42□□□□□ -0.74
TRIM48-201ENST00000417545 B4GALNT3Q6L9W6 998 aa10.42□□□□□ -0.74
TRIM48-201ENST00000417545 CENPQQ7L2Z9 268 aaPredicted RBP10.42□□□□□ -0.74
TRIM48-201ENST00000417545 CLASRPQ8N2M8 674 aaKnown RBP10.42□□□□□ -0.74
TRIM48-201ENST00000417545 NEUROD6Q96NK8 337 aa10.42□□□□□ -0.74
TRIM48-201ENST00000417545 NOP58Q9Y2X3 529 aaKnown RBP10.42□□□□□ -0.74
TRIM48-201ENST00000417545 COL4A1P02462 1669 aa10.42□□□□□ -0.74
TRIM48-201ENST00000417545 TAF5LO75529 589 aa10.41□□□□□ -0.74
TRIM48-201ENST00000417545 IFIT2P09913 472 aaKnown RBP10.41□□□□□ -0.74
TRIM48-201ENST00000417545 GPSM2P81274 684 aa10.41□□□□□ -0.74
TRIM48-201ENST00000417545 PUM3Q15397 648 aaKnown RBP10.41□□□□□ -0.74
TRIM48-201ENST00000417545 ARHGAP27Q6ZUM4 889 aa10.41□□□□□ -0.74
TRIM48-201ENST00000417545 VPS37DQ86XT2 251 aa10.41□□□□□ -0.74
TRIM48-201ENST00000417545 RHPN1Q8TCX5 695 aa10.41□□□□□ -0.74
TRIM48-201ENST00000417545 DCTPP1Q9H773 170 aa10.41□□□□□ -0.74
TRIM48-201ENST00000417545 LEMD3Q9Y2U8 911 aa10.41□□□□□ -0.74
TRIM48-201ENST00000417545 ZNF804BA4D1E1 1349 aa10.41□□□□□ -0.74
TRIM48-201ENST00000417545 FRAT2O75474 233 aaPredicted RBP10.41□□□□□ -0.74
TRIM48-201ENST00000417545 PDE8BO95263 885 aa10.41□□□□□ -0.74
TRIM48-201ENST00000417545 CAVIN4Q5BKX8 364 aa10.41□□□□□ -0.74
TRIM48-201ENST00000417545 ATG9AQ7Z3C6 839 aa10.41□□□□□ -0.74
TRIM48-201ENST00000417545 GPATCH3Q96I76 525 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms