RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 CHD4Q14839 1912 aa3.55□□□□□ -1.84
MCF2-204ENST00000414978 LMTK2Q8IWU2 1503 aa3.54□□□□□ -1.84
MCF2-204ENST00000414978 HOXB1P14653 301 aaPredicted RBP3.54□□□□□ -1.84
MCF2-204ENST00000414978 CEBPAP49715 358 aaPredicted RBP3.54□□□□□ -1.84
MCF2-204ENST00000414978 GNL2Q13823 731 aaKnown RBP3.54□□□□□ -1.84
MCF2-204ENST00000414978 PLEKHG6Q3KR16 790 aa3.54□□□□□ -1.84
MCF2-204ENST00000414978 USPL1Q5W0Q7 1092 aa3.54□□□□□ -1.84
MCF2-204ENST00000414978 ZNF772Q68DY9 489 aaPredicted RBP3.54□□□□□ -1.84
MCF2-204ENST00000414978 CLEC4GQ6UXB4 293 aa3.54□□□□□ -1.84
MCF2-204ENST00000414978 MCF2L2Q86YR7 1114 aa3.54□□□□□ -1.84
MCF2-204ENST00000414978 RAVER1Q8IY67 606 aaKnown RBP3.54□□□□□ -1.84
MCF2-204ENST00000414978 ZNF511Q8NB15 262 aa3.54□□□□□ -1.84
MCF2-204ENST00000414978 COPRSQ9NQ92 184 aa3.54□□□□□ -1.84
MCF2-204ENST00000414978 CHST12Q9NRB3 414 aa3.54□□□□□ -1.84
MCF2-204ENST00000414978 FMN1Q68DA7 1419 aa3.54□□□□□ -1.84
MCF2-204ENST00000414978 NEXMIFQ5QGS0 1516 aa3.54□□□□□ -1.84
MCF2-204ENST00000414978 NCLP19338 710 aaKnown RBP3.54□□□□□ -1.84
MCF2-204ENST00000414978 SLC9A9Q8IVB4 645 aa3.54□□□□□ -1.84
MCF2-204ENST00000414978 KCTD12Q96CX2 325 aaKnown RBP3.54□□□□□ -1.84
MCF2-204ENST00000414978 KANSL2Q9H9L4 492 aa3.54□□□□□ -1.84
MCF2-204ENST00000414978 IQGAP3Q86VI3 1631 aa3.54□□□□□ -1.84
MCF2-204ENST00000414978 SETD5Q9C0A6 1442 aa3.54□□□□□ -1.84
MCF2-204ENST00000414978 OPLAHO14841 1288 aa3.54□□□□□ -1.84
MCF2-204ENST00000414978 FZD6O60353 706 aa3.54□□□□□ -1.84
MCF2-204ENST00000414978 INTS6LQ5JSJ4 861 aaKnown RBP3.54□□□□□ -1.84
MCF2-204ENST00000414978 FBXW10Q5XX13 1052 aa3.54□□□□□ -1.84
MCF2-204ENST00000414978 EPS8L3Q8TE67 593 aaKnown RBP3.54□□□□□ -1.84
MCF2-204ENST00000414978 NUDT16Q96DE0 195 aaKnown RBP3.54□□□□□ -1.84
MCF2-204ENST00000414978 ETNK1Q9HBU6 452 aa3.54□□□□□ -1.84
MCF2-204ENST00000414978 STIM2Q9P246 746 aa3.54□□□□□ -1.84
MCF2-204ENST00000414978 MIA2Q96PC5 1412 aa3.53□□□□□ -1.84
MCF2-204ENST00000414978 SH3BP5LQ7L8J4 393 aa3.53□□□□□ -1.84
MCF2-204ENST00000414978 ETFBKMTQ8IXQ9 262 aa3.53□□□□□ -1.84
MCF2-204ENST00000414978 ARMC2Q8NEN0 867 aa3.53□□□□□ -1.84
MCF2-204ENST00000414978 ZSWIM6Q9HCJ5 1215 aa3.53□□□□□ -1.84
MCF2-204ENST00000414978 ARID5AQ03989 594 aa3.53□□□□□ -1.84
MCF2-204ENST00000414978 CCDC81Q6ZN84 652 aa3.53□□□□□ -1.84
MCF2-204ENST00000414978 PODNQ7Z5L7 613 aa3.53□□□□□ -1.84
MCF2-204ENST00000414978 EXOC8Q8IYI6 725 aa3.53□□□□□ -1.84
MCF2-204ENST00000414978 ZNF784Q8NCA9 323 aaPredicted RBP3.53□□□□□ -1.84
MCF2-204ENST00000414978 ANAPC16Q96DE5 110 aa3.53□□□□□ -1.84
MCF2-204ENST00000414978 CABP1Q9NZU7 370 aa3.53□□□□□ -1.84
MCF2-204ENST00000414978 hCG_2014768A0A024R1R8 64 aa3.53□□□□□ -1.84
MCF2-204ENST00000414978 U2SURPO15042 1029 aaKnown RBP3.53□□□□□ -1.84
MCF2-204ENST00000414978 PTCD1O75127 700 aaKnown RBP3.53□□□□□ -1.84
MCF2-204ENST00000414978 PRPF40AO75400 957 aaKnown RBP3.53□□□□□ -1.84
MCF2-204ENST00000414978 TEX2Q8IWB9 1127 aa3.53□□□□□ -1.84
MCF2-204ENST00000414978 V9GY48 417 aaPredicted RBP3.53□□□□□ -1.84
MCF2-204ENST00000414978 EFCAB6Q5THR3 1501 aa3.53□□□□□ -1.85
MCF2-204ENST00000414978 PEX14O75381 377 aa3.52□□□□□ -1.85
MCF2-204ENST00000414978 DXOO77932 396 aaKnown RBP3.52□□□□□ -1.85
MCF2-204ENST00000414978 ZAP70P43403 619 aa3.52□□□□□ -1.85
MCF2-204ENST00000414978 C21orf62-AS1Q17RA5 79 aa3.52□□□□□ -1.85
MCF2-204ENST00000414978 TGIF2Q9GZN2 237 aa3.52□□□□□ -1.85
MCF2-204ENST00000414978 ABCA3Q99758 1704 aa3.52□□□□□ -1.85
MCF2-204ENST00000414978 PRAG1Q86YV5 1406 aa3.52□□□□□ -1.85
MCF2-204ENST00000414978 STK10O94804 968 aaKnown RBP3.52□□□□□ -1.85
MCF2-204ENST00000414978 SSBP05455 408 aaKnown RBP eCLIP3.52□□□□□ -1.85
MCF2-204ENST00000414978 SCNN1DP51172 638 aa3.52□□□□□ -1.85
MCF2-204ENST00000414978 TLR1Q15399 786 aa3.52□□□□□ -1.85
MCF2-204ENST00000414978 KLRG1Q96E93 195 aa3.52□□□□□ -1.85
MCF2-204ENST00000414978 SRPK1Q96SB4 655 aaKnown RBP3.52□□□□□ -1.85
MCF2-204ENST00000414978 IRF2BPLQ9H1B7 796 aa3.52□□□□□ -1.85
MCF2-204ENST00000414978 ST7Q9NRC1 585 aa3.52□□□□□ -1.85
MCF2-204ENST00000414978 ATRNO75882 1429 aa3.52□□□□□ -1.85
MCF2-204ENST00000414978 PTCH1Q13635 1447 aa3.52□□□□□ -1.85
MCF2-204ENST00000414978 NUP188Q5SRE5 1749 aa3.52□□□□□ -1.85
MCF2-204ENST00000414978 MEN1O00255 615 aa3.52□□□□□ -1.85
MCF2-204ENST00000414978 TPD52L2O43399 206 aaKnown RBP3.52□□□□□ -1.85
MCF2-204ENST00000414978 SH3BP2P78314 561 aa3.52□□□□□ -1.85
MCF2-204ENST00000414978 PTPN12Q05209 780 aaKnown RBP3.52□□□□□ -1.85
MCF2-204ENST00000414978 AXDND1Q5T1B0 1012 aaPredicted RBP3.52□□□□□ -1.85
MCF2-204ENST00000414978 ADGRD1Q6QNK2 874 aa3.52□□□□□ -1.85
MCF2-204ENST00000414978 EHBP1Q8NDI1 1231 aa3.52□□□□□ -1.85
MCF2-204ENST00000414978 FAM126AQ9BYI3 521 aaPredicted RBP3.52□□□□□ -1.85
MCF2-204ENST00000414978 FOXD3Q9UJU5 478 aaPredicted RBP3.52□□□□□ -1.85
MCF2-204ENST00000414978 EHBP1L1Q8N3D4 1523 aa3.51□□□□□ -1.85
MCF2-204ENST00000414978 GCC2Q8IWJ2 1684 aa3.51□□□□□ -1.85
MCF2-204ENST00000414978 DISP2A7MBM2 1401 aa3.51□□□□□ -1.85
MCF2-204ENST00000414978 EIF1AYO14602 144 aaKnown RBP3.51□□□□□ -1.85
MCF2-204ENST00000414978 TNFRSF10BO14763 440 aa3.51□□□□□ -1.85
MCF2-204ENST00000414978 PHKA2P46019 1235 aa3.51□□□□□ -1.85
MCF2-204ENST00000414978 FAM160A1Q05DH4 1040 aa3.51□□□□□ -1.85
MCF2-204ENST00000414978 C4orf46Q504U0 113 aa3.51□□□□□ -1.85
MCF2-204ENST00000414978 TRIM56Q9BRZ2 755 aaKnown RBP3.51□□□□□ -1.85
MCF2-204ENST00000414978 SLC6A16Q9GZN6 736 aa3.51□□□□□ -1.85
MCF2-204ENST00000414978 ZNF395Q9H8N7 513 aaPredicted RBP3.51□□□□□ -1.85
MCF2-204ENST00000414978 CASZ1Q86V15 1759 aa3.51□□□□□ -1.85
MCF2-204ENST00000414978 FYCO1Q9BQS8 1478 aa3.51□□□□□ -1.85
MCF2-204ENST00000414978 MYO5BQ9ULV0 1848 aa3.51□□□□□ -1.85
MCF2-204ENST00000414978 NRAPQ86VF7 1730 aa3.51□□□□□ -1.85
MCF2-204ENST00000414978 LZTS3O60299 673 aaPredicted RBP3.51□□□□□ -1.85
MCF2-204ENST00000414978 TRIM37O94972 964 aa3.51□□□□□ -1.85
MCF2-204ENST00000414978 CLCN6P51797 869 aa3.51□□□□□ -1.85
MCF2-204ENST00000414978 RELBQ01201 579 aa3.51□□□□□ -1.85
MCF2-204ENST00000414978 RNF20Q5VTR2 975 aa3.51□□□□□ -1.85
MCF2-204ENST00000414978 NXPE4Q6UWF7 544 aa3.51□□□□□ -1.85
MCF2-204ENST00000414978 ANKLE2Q86XL3 938 aa3.51□□□□□ -1.85
MCF2-204ENST00000414978 MTRQ99707 1265 aa3.51□□□□□ -1.85
MCF2-204ENST00000414978 RBCK1Q9BYM8 510 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms