RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 UBE2HP62256 183 aa15.07■□□□□ 0
CCDC88A-204ENST00000413716 CAVIN4Q5BKX8 364 aa15.07■□□□□ 0
CCDC88A-204ENST00000413716 CAPZA3Q96KX2 299 aa15.07■□□□□ 0
CCDC88A-204ENST00000413716 SYF2O95926 243 aaKnown RBP15.07■□□□□ 0
CCDC88A-204ENST00000413716 INPP5BP32019 993 aa15.07■□□□□ 0
CCDC88A-204ENST00000413716 CABP4P57796 275 aa15.07■□□□□ 0
CCDC88A-204ENST00000413716 E7EVH7 732 aa15.07■□□□□ 0
CCDC88A-204ENST00000413716 UBA7P41226 1012 aa15.07■□□□□ 0
CCDC88A-204ENST00000413716 RASSF2P50749 326 aa15.07■□□□□ 0
CCDC88A-204ENST00000413716 TNNC1P63316 161 aa15.07■□□□□ 0
CCDC88A-204ENST00000413716 RNF8O76064 485 aa15.06■□□□□ 0
CCDC88A-204ENST00000413716 TRIM4Q9C037 500 aa15.06■□□□□ 0
CCDC88A-204ENST00000413716 MUM1Q2TAK8 710 aa15.06■□□□□ 0
CCDC88A-204ENST00000413716 IDEP14735 1019 aa15.06■□□□□ 0
CCDC88A-204ENST00000413716 RILPL1Q5EBL4 403 aa15.06■□□□□ 0
CCDC88A-204ENST00000413716 ABCC8Q09428 1581 aa15.06■□□□□ 0
CCDC88A-204ENST00000413716 DHX57Q6P158 1386 aaKnown RBP15.06■□□□□ 0
CCDC88A-204ENST00000413716 STAT6P42226 847 aa15.06■□□□□ 0
CCDC88A-204ENST00000413716 CUX1P39880 1505 aa15.06■□□□□ 0
CCDC88A-204ENST00000413716 PFDN1O60925 122 aa15.06■□□□□ 0
CCDC88A-204ENST00000413716 AP1ARQ63HQ0 302 aa15.06■□□□□ 0
CCDC88A-204ENST00000413716 PNISRQ8TF01 805 aaKnown RBP15.06■□□□□ 0
CCDC88A-204ENST00000413716 SMARCA2P51531 1590 aa15.06■□□□□ 0
CCDC88A-204ENST00000413716 HMGB2P26583 209 aaKnown RBP15.06■□□□□ 0
CCDC88A-204ENST00000413716 HPDP32754 393 aaPredicted RBP15.06■□□□□ 0
CCDC88A-204ENST00000413716 MAP2K2P36507 400 aa15.06■□□□□ 0
CCDC88A-204ENST00000413716 THEGQ9P2T0 379 aa15.06■□□□□ 0
CCDC88A-204ENST00000413716 ABCF2Q9UG63 623 aa15.06■□□□□ 0
CCDC88A-204ENST00000413716 WIZO95785 1651 aa15.06■□□□□ 0
CCDC88A-204ENST00000413716 DNAI1Q9UI46 699 aa15.06■□□□□ 0
CCDC88A-204ENST00000413716 SEL1L2Q5TEA6 688 aa15.05■□□□□ 0
CCDC88A-204ENST00000413716 CCDC102BQ68D86 513 aa15.05■□□□□ 0
CCDC88A-204ENST00000413716 GCKP35557 465 aa15.05■□□□□ -0
CCDC88A-204ENST00000413716 RASA3Q14644 834 aa15.05■□□□□ -0
CCDC88A-204ENST00000413716 UTP11Q9Y3A2 253 aaKnown RBP15.05■□□□□ -0
CCDC88A-204ENST00000413716 HAUS2Q9NVX0 235 aa15.05■□□□□ -0
CCDC88A-204ENST00000413716 ANKIB1Q9P2G1 1089 aa15.05■□□□□ -0
CCDC88A-204ENST00000413716 HDAC9Q9UKV0 1011 aa15.05■□□□□ -0
CCDC88A-204ENST00000413716 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.05■□□□□ -0
CCDC88A-204ENST00000413716 ZNF444Q8N0Y2 327 aaPredicted RBP15.05■□□□□ -0
CCDC88A-204ENST00000413716 TPX2Q9ULW0 747 aaKnown RBP15.05■□□□□ -0
CCDC88A-204ENST00000413716 CCDC26Q8TAB7 109 aa15.05■□□□□ -0
CCDC88A-204ENST00000413716 RANBP6O60518 1105 aaKnown RBP15.05■□□□□ -0
CCDC88A-204ENST00000413716 LUC7L3O95232 432 aaKnown RBP15.05■□□□□ -0
CCDC88A-204ENST00000413716 SKILP12757 684 aa15.05■□□□□ -0
CCDC88A-204ENST00000413716 PALM3A6NDB9 673 aaPredicted RBP15.04■□□□□ -0
CCDC88A-204ENST00000413716 SPECC1L-ADORA2AF8WAN1 911 aa15.04■□□□□ -0
CCDC88A-204ENST00000413716 STK10O94804 968 aaKnown RBP15.04■□□□□ -0
CCDC88A-204ENST00000413716 RAP1GDS1P52306 607 aa15.04■□□□□ -0
CCDC88A-204ENST00000413716 TTLL12Q14166 644 aaPredicted RBP15.04■□□□□ -0
CCDC88A-204ENST00000413716 FAF1Q9UNN5 650 aaPredicted RBP15.04■□□□□ -0
CCDC88A-204ENST00000413716 OPHN1O60890 802 aa15.04■□□□□ -0
CCDC88A-204ENST00000413716 NCBP1Q09161 790 aaKnown RBP15.04■□□□□ -0
CCDC88A-204ENST00000413716 NOC2LQ9Y3T9 749 aaKnown RBP15.04■□□□□ -0
CCDC88A-204ENST00000413716 ATICP31939 592 aa15.04■□□□□ -0
CCDC88A-204ENST00000413716 PTGS1P23219 599 aa15.03■□□□□ -0
CCDC88A-204ENST00000413716 PHEXP78562 749 aa15.03■□□□□ -0
CCDC88A-204ENST00000413716 FAN1Q9Y2M0 1017 aa15.03■□□□□ -0
CCDC88A-204ENST00000413716 BCAR3O75815 825 aa15.03■□□□□ -0
CCDC88A-204ENST00000413716 ATF7IPQ6VMQ6 1270 aa15.03■□□□□ -0
CCDC88A-204ENST00000413716 MRPL46Q9H2W6 279 aaKnown RBP15.03■□□□□ -0
CCDC88A-204ENST00000413716 SYT1P21579 422 aa15.03■□□□□ -0
CCDC88A-204ENST00000413716 PPFIA1Q13136 1202 aa15.03■□□□□ -0
CCDC88A-204ENST00000413716 KIFC2Q96AC6 838 aa15.03■□□□□ -0
CCDC88A-204ENST00000413716 AKNAQ7Z591 1439 aa15.03■□□□□ -0
CCDC88A-204ENST00000413716 ABTB2Q8N961 1025 aa15.03■□□□□ -0
CCDC88A-204ENST00000413716 ATP2A3Q93084 1043 aa15.03■□□□□ -0
CCDC88A-204ENST00000413716 OGFRQ9NZT2 677 aa15.03■□□□□ -0
CCDC88A-204ENST00000413716 PRPF40BQ6NWY9 871 aaKnown RBP15.03■□□□□ -0
CCDC88A-204ENST00000413716 AGTPBP1Q9UPW5 1226 aa15.03■□□□□ -0
CCDC88A-204ENST00000413716 BANK1Q8NDB2 785 aa15.02■□□□□ -0
CCDC88A-204ENST00000413716 BAG1Q99933 345 aaPredicted RBP15.02■□□□□ -0
CCDC88A-204ENST00000413716 CFAP65Q6ZU64 1925 aaKnown RBP15.02■□□□□ -0
CCDC88A-204ENST00000413716 LIMCH1Q9UPQ0 1083 aa15.02■□□□□ -0
CCDC88A-204ENST00000413716 KRT3P12035 628 aa15.02□□□□□ -0.01
CCDC88A-204ENST00000413716 MAP3K12Q12852 859 aa15.02□□□□□ -0.01
CCDC88A-204ENST00000413716 RBBP5Q15291 538 aaKnown RBP15.02□□□□□ -0.01
CCDC88A-204ENST00000413716 METTL24Q5JXM2 366 aa15.02□□□□□ -0.01
CCDC88A-204ENST00000413716 NDUFAB1O14561 156 aa15.02□□□□□ -0.01
CCDC88A-204ENST00000413716 NUTM2GQ5VZR2 741 aa15.02□□□□□ -0.01
CCDC88A-204ENST00000413716 SYKP43405 635 aa15.02□□□□□ -0.01
CCDC88A-204ENST00000413716 FAM13AO94988 1023 aa15.01□□□□□ -0.01
CCDC88A-204ENST00000413716 SDCCAG3Q96C92 435 aa15.01□□□□□ -0.01
CCDC88A-204ENST00000413716 TATP17735 454 aaPredicted RBP15.01□□□□□ -0.01
CCDC88A-204ENST00000413716 ZC3H6P61129 1189 aaKnown RBP15.01□□□□□ -0.01
CCDC88A-204ENST00000413716 ARID5AQ03989 594 aa15.01□□□□□ -0.01
CCDC88A-204ENST00000413716 SPAG1Q07617 926 aa15.01□□□□□ -0.01
CCDC88A-204ENST00000413716 TLDC2A0PJX2 215 aa15.01□□□□□ -0.01
CCDC88A-204ENST00000413716 GUCY1B3Q02153 619 aa15.01□□□□□ -0.01
CCDC88A-204ENST00000413716 PLCB1Q9NQ66 1216 aa15.01□□□□□ -0.01
CCDC88A-204ENST00000413716 ZNF652Q9Y2D9 606 aa15.01□□□□□ -0.01
CCDC88A-204ENST00000413716 TAF12Q16514 161 aa15.01□□□□□ -0.01
CCDC88A-204ENST00000413716 ZNF213O14771 459 aa15.01□□□□□ -0.01
CCDC88A-204ENST00000413716 ACTN4O43707 911 aaKnown RBP15.01□□□□□ -0.01
CCDC88A-204ENST00000413716 GLRX3O76003 335 aaKnown RBP15.01□□□□□ -0.01
CCDC88A-204ENST00000413716 VPS41P49754 854 aa15.01□□□□□ -0.01
CCDC88A-204ENST00000413716 GABPAQ06546 454 aa15.01□□□□□ -0.01
CCDC88A-204ENST00000413716 SIRT1Q96EB6 747 aa15.01□□□□□ -0.01
CCDC88A-204ENST00000413716 MCM10Q7L590 875 aa15□□□□□ -0.01
CCDC88A-204ENST00000413716 DPH6Q7L8W6 267 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms