RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 BCL2L13Q9BXK5 485 aa24.26■■□□□ 1.47
SF3A1-202ENST00000411423 KCNQ5Q9NR82 932 aa24.26■■□□□ 1.47
SF3A1-202ENST00000411423 FOXO4P98177 505 aa24.25■■□□□ 1.47
SF3A1-202ENST00000411423 UFL1O94874 794 aa24.24■■□□□ 1.47
SF3A1-202ENST00000411423 DOK7Q18PE1 504 aa24.24■■□□□ 1.47
SF3A1-202ENST00000411423 CIAPIN1Q6FI81 312 aa24.24■■□□□ 1.47
SF3A1-202ENST00000411423 SLC4A10Q6U841 1118 aa24.24■■□□□ 1.47
SF3A1-202ENST00000411423 SHTN1A0MZ66 631 aa24.23■■□□□ 1.47
SF3A1-202ENST00000411423 ITGA6P23229 1130 aa24.23■■□□□ 1.47
SF3A1-202ENST00000411423 GMPSP49915 693 aaPredicted RBP24.23■■□□□ 1.47
SF3A1-202ENST00000411423 CDC5LQ99459 802 aaKnown RBP24.23■■□□□ 1.47
SF3A1-202ENST00000411423 BSDC1Q9NW68 430 aaPredicted RBP24.23■■□□□ 1.47
SF3A1-202ENST00000411423 ANKIB1Q9P2G1 1089 aa24.23■■□□□ 1.47
SF3A1-202ENST00000411423 MINPP1Q9UNW1 487 aa24.23■■□□□ 1.47
SF3A1-202ENST00000411423 GPRC5DQ9NZD1 345 aa24.22■■□□□ 1.47
SF3A1-202ENST00000411423 GGA1Q9UJY5 639 aa24.22■■□□□ 1.47
SF3A1-202ENST00000411423 SCN9AQ15858 1988 aa24.22■■□□□ 1.47
SF3A1-202ENST00000411423 PASKQ96RG2 1323 aa24.21■■□□□ 1.47
SF3A1-202ENST00000411423 GRM8O00222 908 aa24.21■■□□□ 1.47
SF3A1-202ENST00000411423 ECE2O60344 883 aa24.21■■□□□ 1.47
SF3A1-202ENST00000411423 ITGBL1O95965 494 aaPredicted RBP24.21■■□□□ 1.47
SF3A1-202ENST00000411423 EYA3Q99504 573 aa24.21■■□□□ 1.47
SF3A1-202ENST00000411423 ZBTB12Q9Y330 459 aaPredicted RBP24.21■■□□□ 1.47
SF3A1-202ENST00000411423 XDHP47989 1333 aa24.2■■□□□ 1.46
SF3A1-202ENST00000411423 PSMD14O00487 310 aa24.2■■□□□ 1.46
SF3A1-202ENST00000411423 ALDH1L1O75891 902 aa24.2■■□□□ 1.46
SF3A1-202ENST00000411423 LMOD1P29536 600 aaPredicted RBP24.2■■□□□ 1.46
SF3A1-202ENST00000411423 MAP1SQ66K74 1059 aaPredicted RBP24.2■■□□□ 1.46
SF3A1-202ENST00000411423 KAZALD1Q96I82 304 aa24.2■■□□□ 1.46
SF3A1-202ENST00000411423 SRCIN1Q9C0H9 1055 aa24.2■■□□□ 1.46
SF3A1-202ENST00000411423 CLEC11AQ9Y240 323 aa24.2■■□□□ 1.46
SF3A1-202ENST00000411423 PNMA8AQ86V59 439 aaPredicted RBP24.19■■□□□ 1.46
SF3A1-202ENST00000411423 SUCLG2Q96I99 432 aa24.18■■□□□ 1.46
SF3A1-202ENST00000411423 ZC3H12CQ9C0D7 883 aaKnown RBP24.18■■□□□ 1.46
SF3A1-202ENST00000411423 NBPF7P0C2Y1 421 aaPredicted RBP24.17■■□□□ 1.46
SF3A1-202ENST00000411423 ATP2B4P23634 1241 aa24.17■■□□□ 1.46
SF3A1-202ENST00000411423 TNIP1Q15025 636 aa24.17■■□□□ 1.46
SF3A1-202ENST00000411423 ALDH1L2Q3SY69 923 aa24.17■■□□□ 1.46
SF3A1-202ENST00000411423 LMBR1LQ6UX01 489 aa24.17■■□□□ 1.46
SF3A1-202ENST00000411423 PTPRCP08575 1304 aa24.16■■□□□ 1.46
SF3A1-202ENST00000411423 IGHMBP2P38935 993 aaKnown RBP24.16■■□□□ 1.46
SF3A1-202ENST00000411423 HIRAP54198 1017 aaPredicted RBP24.16■■□□□ 1.46
SF3A1-202ENST00000411423 FMR1Q06787 632 aaKnown RBP eCLIP24.16■■□□□ 1.462e-6■□□□□ 11.2
SF3A1-202ENST00000411423 UTYO14607 1347 aa24.15■■□□□ 1.46
SF3A1-202ENST00000411423 KLRK1P26718 216 aa24.15■■□□□ 1.46
SF3A1-202ENST00000411423 CCT4P50991 539 aaKnown RBP24.15■■□□□ 1.46
SF3A1-202ENST00000411423 USP50Q70EL3 339 aaPredicted RBP24.15■■□□□ 1.46
SF3A1-202ENST00000411423 TXNRD3Q86VQ6 643 aa24.15■■□□□ 1.46
SF3A1-202ENST00000411423 CNTROBQ8N137 903 aa24.15■■□□□ 1.46
SF3A1-202ENST00000411423 TRPM4Q8TD43 1214 aa24.15■■□□□ 1.46
SF3A1-202ENST00000411423 KLRG1Q96E93 195 aa24.15■■□□□ 1.46
SF3A1-202ENST00000411423 ADARB2Q9NS39 739 aaKnown RBP24.15■■□□□ 1.46
SF3A1-202ENST00000411423 SMC4Q9NTJ3 1288 aa24.15■■□□□ 1.46
SF3A1-202ENST00000411423 C9orf78Q9NZ63 289 aaPredicted RBP24.15■■□□□ 1.46
SF3A1-202ENST00000411423 A0A1B0GUL6 1792 aa24.15■■□□□ 1.46
SF3A1-202ENST00000411423 ANKRD18BA2A2Z9 1011 aa24.14■■□□□ 1.45
SF3A1-202ENST00000411423 ZNF594Q96JF6 807 aaPredicted RBP24.14■■□□□ 1.45
SF3A1-202ENST00000411423 CNOT7Q9UIV1 285 aaKnown RBP24.14■■□□□ 1.45
SF3A1-202ENST00000411423 SNAP23O00161 211 aa24.13■■□□□ 1.45
SF3A1-202ENST00000411423 EGFRP00533 1210 aa24.13■■□□□ 1.45
SF3A1-202ENST00000411423 MICALL2Q8IY33 904 aa24.13■■□□□ 1.45
SF3A1-202ENST00000411423 CHMP3Q9Y3E7 222 aa24.13■■□□□ 1.45
SF3A1-202ENST00000411423 MED23Q9ULK4 1368 aa24.13■■□□□ 1.45
SF3A1-202ENST00000411423 ZNF646O15015 1829 aaPredicted RBP24.12■■□□□ 1.45
SF3A1-202ENST00000411423 CHRNDQ07001 517 aa24.12■■□□□ 1.45
SF3A1-202ENST00000411423 MPHOSPH8Q99549 860 aa24.12■■□□□ 1.45
SF3A1-202ENST00000411423 VIL1P09327 827 aaKnown RBP24.11■■□□□ 1.45
SF3A1-202ENST00000411423 IFIT5Q13325 482 aaKnown RBP24.11■■□□□ 1.45
SF3A1-202ENST00000411423 NOB1Q9ULX3 412 aaKnown RBP24.11■■□□□ 1.45
SF3A1-202ENST00000411423 PSME4Q14997 1843 aa24.11■■□□□ 1.45
SF3A1-202ENST00000411423 IRS2Q9Y4H2 1338 aa24.1■■□□□ 1.45
SF3A1-202ENST00000411423 CT47B1P0C2W7 299 aaPredicted RBP24.1■■□□□ 1.45
SF3A1-202ENST00000411423 RARSP54136 660 aaKnown RBP24.1■■□□□ 1.45
SF3A1-202ENST00000411423 SAMD7Q7Z3H4 446 aa24.1■■□□□ 1.45
SF3A1-202ENST00000411423 ANKRD44Q8N8A2 993 aa24.1■■□□□ 1.45
SF3A1-202ENST00000411423 HELBQ8NG08 1087 aaPredicted RBP24.1■■□□□ 1.45
SF3A1-202ENST00000411423 DPF2Q92785 391 aa24.1■■□□□ 1.45
SF3A1-202ENST00000411423 USP44Q9H0E7 712 aa24.1■■□□□ 1.45
SF3A1-202ENST00000411423 CREBZFQ9NS37 354 aa24.1■■□□□ 1.45
SF3A1-202ENST00000411423 TRAF5O00463 557 aa24.09■■□□□ 1.45
SF3A1-202ENST00000411423 TAF5LO75529 589 aa24.09■■□□□ 1.45
SF3A1-202ENST00000411423 BICC1Q9H694 974 aaKnown RBP24.09■■□□□ 1.45
SF3A1-202ENST00000411423 LEMD3Q9Y2U8 911 aa24.09■■□□□ 1.45
SF3A1-202ENST00000411423 ZNF804BA4D1E1 1349 aa24.09■■□□□ 1.45
SF3A1-202ENST00000411423 JMYQ8N9B5 988 aa24.08■■□□□ 1.45
SF3A1-202ENST00000411423 ANKRD2Q9GZV1 360 aa24.08■■□□□ 1.45
SF3A1-202ENST00000411423 PGAP2Q9UHJ9 254 aa24.08■■□□□ 1.45
SF3A1-202ENST00000411423 PCNTO95613 3336 aa24.08■■□□□ 1.44
SF3A1-202ENST00000411423 G3V3G9 751 aa24.07■■□□□ 1.44
SF3A1-202ENST00000411423 BRPF1P55201 1214 aaPredicted RBP24.07■■□□□ 1.44
SF3A1-202ENST00000411423 HNRNPUQ00839 825 aaKnown RBP eCLIP24.07■■□□□ 1.44
SF3A1-202ENST00000411423 CCDC57Q2TAC2 916 aa24.07■■□□□ 1.44
SF3A1-202ENST00000411423 RABL6Q3YEC7 729 aaPredicted RBP24.07■■□□□ 1.44
SF3A1-202ENST00000411423 TBC1D10BQ4KMP7 808 aaPredicted RBP24.07■■□□□ 1.44
SF3A1-202ENST00000411423 DCAF8Q5TAQ9 597 aa24.07■■□□□ 1.44
SF3A1-202ENST00000411423 MXD3Q9BW11 206 aa24.07■■□□□ 1.44
SF3A1-202ENST00000411423 PUS3Q9BZE2 481 aaKnown RBP24.07■■□□□ 1.44
SF3A1-202ENST00000411423 RPS12P25398 132 aaKnown RBP24.06■■□□□ 1.44
SF3A1-202ENST00000411423 RSBN1LQ6PCB5 846 aaPredicted RBP24.06■■□□□ 1.44
SF3A1-202ENST00000411423 GMLQ99445 158 aa24.06■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 85.6 ms