RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 COL17A1Q9UMD9 1497 aaPredicted RBP20.91■□□□□ 0.94
COL18A1-204ENST00000400337 PYM1Q9BRP8 204 aaKnown RBP20.91■□□□□ 0.94
COL18A1-204ENST00000400337 PRC1O43663 620 aa20.91■□□□□ 0.94
COL18A1-204ENST00000400337 USO1O60763 962 aaKnown RBP20.91■□□□□ 0.94
COL18A1-204ENST00000400337 NBPF7P0C2Y1 421 aaPredicted RBP20.91■□□□□ 0.94
COL18A1-204ENST00000400337 CCDC40Q4G0X9 1142 aa20.91■□□□□ 0.94
COL18A1-204ENST00000400337 G2E3Q7L622 706 aa20.91■□□□□ 0.94
COL18A1-204ENST00000400337 DNM1Q05193 864 aaKnown RBP20.91■□□□□ 0.94
COL18A1-204ENST00000400337 TCERG1LQ5VWI1 586 aa20.91■□□□□ 0.94
COL18A1-204ENST00000400337 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP20.91■□□□□ 0.941e-6■■■□□ 15.1
COL18A1-204ENST00000400337 RRP9O43818 475 aaKnown RBP20.9■□□□□ 0.94
COL18A1-204ENST00000400337 F13A1P00488 732 aa20.9■□□□□ 0.94
COL18A1-204ENST00000400337 TRPM2O94759 1503 aa20.9■□□□□ 0.94
COL18A1-204ENST00000400337 BICC1Q9H694 974 aaKnown RBP20.9■□□□□ 0.94
COL18A1-204ENST00000400337 KCNG4Q8TDN1 519 aa20.9■□□□□ 0.94
COL18A1-204ENST00000400337 F8W031 263 aaPredicted RBP20.9■□□□□ 0.94
COL18A1-204ENST00000400337 IRS4O14654 1257 aaPredicted RBP20.9■□□□□ 0.94
COL18A1-204ENST00000400337 CHST3Q7LGC8 479 aa20.9■□□□□ 0.94
COL18A1-204ENST00000400337 ZBTB7BO15156 539 aaPredicted RBP20.89■□□□□ 0.94
COL18A1-204ENST00000400337 RNF113AO15541 343 aaKnown RBP20.89■□□□□ 0.94
COL18A1-204ENST00000400337 AK2P54819 239 aa20.89■□□□□ 0.94
COL18A1-204ENST00000400337 TTLL12Q14166 644 aaPredicted RBP20.89■□□□□ 0.94
COL18A1-204ENST00000400337 CETN2P41208 172 aa20.89■□□□□ 0.93
COL18A1-204ENST00000400337 ZGPATQ8N5A5 531 aaKnown RBP20.89■□□□□ 0.93
COL18A1-204ENST00000400337 C8orf37Q96NL8 207 aa20.89■□□□□ 0.93
COL18A1-204ENST00000400337 CREB3L3Q68CJ9 461 aa20.88■□□□□ 0.93
COL18A1-204ENST00000400337 TBX22Q9Y458 520 aa20.88■□□□□ 0.93
COL18A1-204ENST00000400337 LIG1P18858 919 aa20.88■□□□□ 0.93
COL18A1-204ENST00000400337 CHMLP26374 656 aa20.88■□□□□ 0.93
COL18A1-204ENST00000400337 DACT1Q9NYF0 836 aa20.88■□□□□ 0.93
COL18A1-204ENST00000400337 MARCKSP29966 332 aaPredicted RBP20.88■□□□□ 0.93
COL18A1-204ENST00000400337 AFMP43652 599 aa20.88■□□□□ 0.93
COL18A1-204ENST00000400337 MRPS27Q92552 414 aaKnown RBP20.88■□□□□ 0.93
COL18A1-204ENST00000400337 SEC24BO95487 1268 aa20.87■□□□□ 0.93
COL18A1-204ENST00000400337 IL13P35225 146 aa20.87■□□□□ 0.93
COL18A1-204ENST00000400337 SBNO2Q9Y2G9 1366 aa20.87■□□□□ 0.93
COL18A1-204ENST00000400337 UBAP1LF5GYI3 381 aa20.87■□□□□ 0.93
COL18A1-204ENST00000400337 HSPA2P54652 639 aa20.87■□□□□ 0.93
COL18A1-204ENST00000400337 ANO6Q4KMQ2 910 aa20.87■□□□□ 0.93
COL18A1-204ENST00000400337 DDX21Q9NR30 783 aaKnown RBP eCLIP20.87■□□□□ 0.93
COL18A1-204ENST00000400337 TOM1O60784 492 aa20.87■□□□□ 0.93
COL18A1-204ENST00000400337 LUZP1Q86V48 1076 aa20.87■□□□□ 0.93
COL18A1-204ENST00000400337 CCDC178Q5BJE1 867 aa20.87■□□□□ 0.93
COL18A1-204ENST00000400337 PAFAH1B1P43034 410 aa20.86■□□□□ 0.93
COL18A1-204ENST00000400337 UHRF1BP1Q6BDS2 1440 aa20.86■□□□□ 0.93
COL18A1-204ENST00000400337 MAGEB6P1A0A0J9YX57 407 aa20.86■□□□□ 0.93
COL18A1-204ENST00000400337 N4BP3O15049 544 aa20.86■□□□□ 0.93
COL18A1-204ENST00000400337 HEATR3Q7Z4Q2 680 aa20.86■□□□□ 0.93
COL18A1-204ENST00000400337 MIGA1Q8NAN2 632 aa20.86■□□□□ 0.93
COL18A1-204ENST00000400337 TRIM47Q96LD4 638 aa20.86■□□□□ 0.93
COL18A1-204ENST00000400337 SAMM50Q9Y512 469 aa20.86■□□□□ 0.93
COL18A1-204ENST00000400337 APOBRQ0VD83 1088 aa20.85■□□□□ 0.93
COL18A1-204ENST00000400337 PICALMQ13492 652 aa20.85■□□□□ 0.93
COL18A1-204ENST00000400337 FAM114A1Q8IWE2 563 aa20.85■□□□□ 0.93
COL18A1-204ENST00000400337 HSP90AA4PQ58FG1 418 aa20.85■□□□□ 0.93
COL18A1-204ENST00000400337 DNMT1P26358 1616 aaKnown RBP20.85■□□□□ 0.93
COL18A1-204ENST00000400337 BMP15O95972 392 aa20.85■□□□□ 0.93
COL18A1-204ENST00000400337 CETN1Q12798 172 aa20.84■□□□□ 0.93
COL18A1-204ENST00000400337 MAGEB6Q8N7X4 407 aa20.84■□□□□ 0.93
COL18A1-204ENST00000400337 ABCC2Q92887 1545 aa20.84■□□□□ 0.93
COL18A1-204ENST00000400337 SNW1Q13573 536 aaKnown RBP20.84■□□□□ 0.93
COL18A1-204ENST00000400337 ZRSR2Q15696 482 aaKnown RBP20.84■□□□□ 0.93
COL18A1-204ENST00000400337 RRAGBQ5VZM2 374 aa20.84■□□□□ 0.93
COL18A1-204ENST00000400337 EXOC1Q9NV70 894 aa20.84■□□□□ 0.93
COL18A1-204ENST00000400337 PCDH11XQ9BZA7 1347 aa20.84■□□□□ 0.93
COL18A1-204ENST00000400337 PCDH11YQ9BZA8 1340 aa20.84■□□□□ 0.93
COL18A1-204ENST00000400337 ERICH4A6NGS2 130 aa20.84■□□□□ 0.93
COL18A1-204ENST00000400337 MAP9Q49MG5 647 aa20.84■□□□□ 0.93
COL18A1-204ENST00000400337 TPTE2Q6XPS3 522 aa20.84■□□□□ 0.93
COL18A1-204ENST00000400337 USP26Q9BXU7 913 aa20.84■□□□□ 0.93
COL18A1-204ENST00000400337 UBASH3AP57075 661 aa20.83■□□□□ 0.93
COL18A1-204ENST00000400337 NEBLO76041 1014 aa20.83■□□□□ 0.93
COL18A1-204ENST00000400337 USP8P40818 1118 aa20.83■□□□□ 0.93
COL18A1-204ENST00000400337 FAM200AQ8TCP9 573 aa20.83■□□□□ 0.93
COL18A1-204ENST00000400337 TRIM21P19474 475 aaKnown RBP20.83■□□□□ 0.93
COL18A1-204ENST00000400337 GNAQP50148 359 aa20.83■□□□□ 0.93
COL18A1-204ENST00000400337 CCDC150Q8NCX0 1101 aa20.83■□□□□ 0.92
COL18A1-204ENST00000400337 NYXQ9GZU5 481 aa20.83■□□□□ 0.92
COL18A1-204ENST00000400337 RMND1Q9NWS8 449 aa20.83■□□□□ 0.92
COL18A1-204ENST00000400337 GBP2P32456 591 aaPredicted RBP20.83■□□□□ 0.92
COL18A1-204ENST00000400337 STAT6P42226 847 aa20.83■□□□□ 0.92
COL18A1-204ENST00000400337 ZNF790Q6PG37 636 aa20.82■□□□□ 0.92
COL18A1-204ENST00000400337 ZNF804AQ7Z570 1209 aa20.82■□□□□ 0.92
COL18A1-204ENST00000400337 SYCP3Q8IZU3 236 aa20.82■□□□□ 0.92
COL18A1-204ENST00000400337 OTUD7AQ8TE49 926 aaPredicted RBP20.82■□□□□ 0.92
COL18A1-204ENST00000400337 ZNF830Q96NB3 372 aaPredicted RBP20.82■□□□□ 0.92
COL18A1-204ENST00000400337 TRIM35Q9UPQ4 493 aa20.82■□□□□ 0.92
COL18A1-204ENST00000400337 LRRC27Q9C0I9 530 aa20.82■□□□□ 0.92
COL18A1-204ENST00000400337 MYO1BO43795 1136 aa20.82■□□□□ 0.92
COL18A1-204ENST00000400337 RUFY3Q7L099 469 aa20.82■□□□□ 0.92
COL18A1-204ENST00000400337 DHX32Q7L7V1 743 aaKnown RBP20.82■□□□□ 0.92
COL18A1-204ENST00000400337 GNAT2P19087 354 aa20.82■□□□□ 0.92
COL18A1-204ENST00000400337 DNAJC25Q9H1X3 360 aa20.82■□□□□ 0.92
COL18A1-204ENST00000400337 CCDC171Q6TFL3 1326 aa20.82■□□□□ 0.92
COL18A1-204ENST00000400337 RAB3GAP1Q15042 981 aa20.81■□□□□ 0.92
COL18A1-204ENST00000400337 NPC1L1Q9UHC9 1359 aa20.81■□□□□ 0.92
COL18A1-204ENST00000400337 EDC4Q6P2E9 1401 aaKnown RBP20.81■□□□□ 0.92
COL18A1-204ENST00000400337 STXBP4Q6ZWJ1 553 aa20.81■□□□□ 0.92
COL18A1-204ENST00000400337 SBNO1A3KN83 1393 aa20.81■□□□□ 0.92
COL18A1-204ENST00000400337 MACROD2A1Z1Q3 448 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms