RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 SEC31BQ9NQW1 1179 aa36.81■■■■□ 3.48
HMGB1-205ENST00000399494 ECE2O60344 883 aa36.8■■■■□ 3.48
HMGB1-205ENST00000399494 MYD88Q99836 296 aa36.8■■■■□ 3.48
HMGB1-205ENST00000399494 CALD1Q05682 793 aaKnown RBP36.79■■■■□ 3.48
HMGB1-205ENST00000399494 PODXL2Q9NZ53 605 aa36.79■■■■□ 3.48
HMGB1-205ENST00000399494 RPS12P25398 132 aaKnown RBP36.78■■■■□ 3.48
HMGB1-205ENST00000399494 DLK2Q6UY11 383 aa36.78■■■■□ 3.48
HMGB1-205ENST00000399494 C8orf58Q8NAV2 365 aa36.78■■■■□ 3.48
HMGB1-205ENST00000399494 CCDC191Q8NCU4 936 aa36.78■■■■□ 3.48
HMGB1-205ENST00000399494 ABHD8Q96I13 439 aa36.78■■■■□ 3.48
HMGB1-205ENST00000399494 RTL9Q8NET4 1388 aa36.78■■■■□ 3.48
HMGB1-205ENST00000399494 EGFRP00533 1210 aa36.77■■■■□ 3.48
HMGB1-205ENST00000399494 HSP90B1P14625 803 aaKnown RBP36.77■■■■□ 3.48
HMGB1-205ENST00000399494 TBC1D10BQ4KMP7 808 aaPredicted RBP36.77■■■■□ 3.48
HMGB1-205ENST00000399494 PCCAP05165 728 aaPredicted RBP36.76■■■■□ 3.48
HMGB1-205ENST00000399494 ZC3H12CQ9C0D7 883 aaKnown RBP36.76■■■■□ 3.48
HMGB1-205ENST00000399494 TSKSQ9UJT2 592 aa36.74■■■■□ 3.47
HMGB1-205ENST00000399494 PDE8AO60658 829 aa36.73■■■■□ 3.47
HMGB1-205ENST00000399494 VIL1P09327 827 aaKnown RBP36.73■■■■□ 3.47
HMGB1-205ENST00000399494 JARID2Q92833 1246 aaPredicted RBP36.73■■■■□ 3.47
HMGB1-205ENST00000399494 METTL22Q9BUU2 404 aaPredicted RBP36.73■■■■□ 3.47
HMGB1-205ENST00000399494 CCDC152Q4G0S7 254 aa36.72■■■■□ 3.47
HMGB1-205ENST00000399494 RBM26Q5T8P6 1007 aaKnown RBP36.72■■■■□ 3.47
HMGB1-205ENST00000399494 CWC25Q9NXE8 425 aaPredicted RBP36.72■■■■□ 3.47
HMGB1-205ENST00000399494 BRPF1P55201 1214 aaPredicted RBP36.71■■■■□ 3.47
HMGB1-205ENST00000399494 KRT26Q7Z3Y9 468 aa36.71■■■■□ 3.47
HMGB1-205ENST00000399494 ANKIB1Q9P2G1 1089 aa36.71■■■■□ 3.47
HMGB1-205ENST00000399494 CA12O43570 354 aa36.7■■■■□ 3.47
HMGB1-205ENST00000399494 GGA1Q9UJY5 639 aa36.7■■■■□ 3.47
HMGB1-205ENST00000399494 UFL1O94874 794 aa36.69■■■■□ 3.46
HMGB1-205ENST00000399494 HUNKP57058 714 aa36.69■■■■□ 3.46
HMGB1-205ENST00000399494 CCDC30Q5VVM6 783 aa36.69■■■■□ 3.46
HMGB1-205ENST00000399494 DCPSQ96C86 337 aaKnown RBP36.69■■■■□ 3.46
HMGB1-205ENST00000399494 DDX58O95786 925 aaKnown RBP36.68■■■■□ 3.46
HMGB1-205ENST00000399494 CHMP4AQ9BY43 222 aa36.68■■■■□ 3.46
HMGB1-205ENST00000399494 FAM9BQ8IZU0 186 aa36.67■■■■□ 3.46
HMGB1-205ENST00000399494 TSPYL6Q8N831 410 aa36.67■■■■□ 3.46
HMGB1-205ENST00000399494 CCDC85AQ96PX6 553 aaPredicted RBP36.67■■■■□ 3.46
HMGB1-205ENST00000399494 ZIC5Q96T25 663 aa36.67■■■■□ 3.46
HMGB1-205ENST00000399494 POLR2AP24928 1970 aaKnown RBP36.66■■■■□ 3.46
HMGB1-205ENST00000399494 G3V3G9 751 aa36.66■■■■□ 3.46
HMGB1-205ENST00000399494 NOGQ13253 232 aa36.66■■■■□ 3.46
HMGB1-205ENST00000399494 DCAF8Q5TAQ9 597 aa36.66■■■■□ 3.46
HMGB1-205ENST00000399494 SCN9AQ15858 1988 aa36.66■■■■□ 3.46
HMGB1-205ENST00000399494 ADM5C9JUS6 153 aa36.65■■■■□ 3.46
HMGB1-205ENST00000399494 KIF4BQ2VIQ3 1234 aa36.65■■■■□ 3.46
HMGB1-205ENST00000399494 MAP3K2Q9Y2U5 619 aa36.65■■■■□ 3.46
HMGB1-205ENST00000399494 GBA2Q9HCG7 927 aaPredicted RBP36.64■■■■□ 3.46
HMGB1-205ENST00000399494 ANKRD18AQ8IVF6 992 aa36.63■■■■□ 3.45
HMGB1-205ENST00000399494 C2orf69Q8N8R5 385 aa36.63■■■■□ 3.45
HMGB1-205ENST00000399494 KSR2Q6VAB6 950 aa36.62■■■■□ 3.45
HMGB1-205ENST00000399494 FAM155AB1AL88 458 aaPredicted RBP36.61■■■■□ 3.45
HMGB1-205ENST00000399494 IGKV5-2P06315 115 aa36.61■■■■□ 3.45
HMGB1-205ENST00000399494 DIEXFQ68CQ4 756 aaKnown RBP36.61■■■■□ 3.45
HMGB1-205ENST00000399494 RGMBQ6NW40 437 aa36.61■■■■□ 3.45
HMGB1-205ENST00000399494 AGBL3Q8NEM8 1001 aa36.61■■■■□ 3.45
HMGB1-205ENST00000399494 XDHP47989 1333 aa36.6■■■■□ 3.45
HMGB1-205ENST00000399494 PI4KAP2A4QPH2 592 aa36.6■■■■□ 3.45
HMGB1-205ENST00000399494 ZNF280AP59817 542 aaPredicted RBP36.6■■■■□ 3.45
HMGB1-205ENST00000399494 RSBN1LQ6PCB5 846 aaPredicted RBP36.6■■■■□ 3.45
HMGB1-205ENST00000399494 PI4KAP1Q8N8J0 262 aa36.6■■■■□ 3.45
HMGB1-205ENST00000399494 ASTN2O75129 1339 aaPredicted RBP36.59■■■■□ 3.45
HMGB1-205ENST00000399494 ATP2B4P23634 1241 aa36.58■■■■□ 3.45
HMGB1-205ENST00000399494 GMLQ99445 158 aa36.58■■■■□ 3.45
HMGB1-205ENST00000399494 GGA3Q9NZ52 723 aa36.58■■■■□ 3.45
HMGB1-205ENST00000399494 ZNF609O15014 1411 aa36.58■■■■□ 3.45
HMGB1-205ENST00000399494 WTIPA6NIX2 430 aaPredicted RBP36.57■■■■□ 3.44
HMGB1-205ENST00000399494 CTSWP56202 376 aa36.57■■■■□ 3.44
HMGB1-205ENST00000399494 SULF1Q8IWU6 871 aa36.57■■■■□ 3.44
HMGB1-205ENST00000399494 TTLL11Q8NHH1 800 aa36.57■■■■□ 3.44
HMGB1-205ENST00000399494 TSR2Q969E8 191 aaKnown RBP36.57■■■■□ 3.44
HMGB1-205ENST00000399494 CCDC85CA6NKD9 419 aa36.56■■■■□ 3.44
HMGB1-205ENST00000399494 CCDC102AQ96A19 550 aa36.56■■■■□ 3.44
HMGB1-205ENST00000399494 CDC5LQ99459 802 aaKnown RBP36.56■■■■□ 3.44
HMGB1-205ENST00000399494 SCARF1Q14162 830 aa36.55■■■■□ 3.44
HMGB1-205ENST00000399494 PODNQ7Z5L7 613 aa36.55■■■■□ 3.44
HMGB1-205ENST00000399494 BSDC1Q9NW68 430 aaPredicted RBP36.54■■■■□ 3.44
HMGB1-205ENST00000399494 MINPP1Q9UNW1 487 aa36.54■■■■□ 3.44
HMGB1-205ENST00000399494 ZNF157P51786 506 aaPredicted RBP36.53■■■■□ 3.44
HMGB1-205ENST00000399494 STK31Q9BXU1 1019 aa36.53■■■■□ 3.44
HMGB1-205ENST00000399494 MCOLN1Q9GZU1 580 aa36.53■■■■□ 3.44
HMGB1-205ENST00000399494 CASP8AP2Q9UKL3 1982 aa36.53■■■■□ 3.44
HMGB1-205ENST00000399494 USP17L3A6NCW0 530 aa36.52■■■■□ 3.44
HMGB1-205ENST00000399494 USP17L4A6NCW7 530 aa36.52■■■■□ 3.44
HMGB1-205ENST00000399494 CCER2I3L3R5 266 aa36.52■■■■□ 3.44
HMGB1-205ENST00000399494 KIF23Q02241 960 aaPredicted RBP36.52■■■■□ 3.44
HMGB1-205ENST00000399494 NEXNQ0ZGT2 675 aa36.52■■■■□ 3.44
HMGB1-205ENST00000399494 CCDC27Q2M243 656 aa36.52■■■■□ 3.44
HMGB1-205ENST00000399494 CWF19L2Q2TBE0 894 aaKnown RBP36.52■■■■□ 3.44
HMGB1-205ENST00000399494 ANGEL2Q5VTE6 544 aaKnown RBP36.52■■■■□ 3.44
HMGB1-205ENST00000399494 USP17L1Q7RTZ2 530 aa36.52■■■■□ 3.44
HMGB1-205ENST00000399494 CDCA5Q96FF9 252 aa36.52■■■■□ 3.44
HMGB1-205ENST00000399494 GREM2Q9H772 168 aa36.52■■■■□ 3.44
HMGB1-205ENST00000399494 USP17L8P0C7I0 530 aa36.51■■■■□ 3.44
HMGB1-205ENST00000399494 G2E3Q7L622 706 aa36.51■■■■□ 3.44
HMGB1-205ENST00000399494 NEURL1BA8MQ27 555 aa36.5■■■■□ 3.43
HMGB1-205ENST00000399494 WWC1Q8IX03 1113 aa36.5■■■■□ 3.43
HMGB1-205ENST00000399494 MYOZ2Q9NPC6 264 aa36.5■■■■□ 3.43
HMGB1-205ENST00000399494 PSME4Q14997 1843 aa36.5■■■■□ 3.43
HMGB1-205ENST00000399494 H7C1W4 665 aa36.49■■■■□ 3.43
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms