RNA–Protein interactions for RNA: ENST00000399455.2

USP47-203, Transcript of ubiquitin specific peptidase 47, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP47, Length 7,396 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-203ENST00000399455 DLGAP5Q15398 846 aa9.17□□□□□ -0.94
USP47-203ENST00000399455 PLBD2Q8NHP8 589 aa9.17□□□□□ -0.94
USP47-203ENST00000399455 TSPY26PQ9H489 355 aa9.17□□□□□ -0.94
USP47-203ENST00000399455 FIBPO43427 364 aa9.17□□□□□ -0.94
USP47-203ENST00000399455 PRKAG2Q9UGJ0 569 aa9.17□□□□□ -0.94
USP47-203ENST00000399455 CFAP65Q6ZU64 1925 aaKnown RBP9.17□□□□□ -0.94
USP47-203ENST00000399455 TBC1D22AQ8WUA7 517 aa9.17□□□□□ -0.94
USP47-203ENST00000399455 SH3TC1Q8TE82 1336 aa9.17□□□□□ -0.94
USP47-203ENST00000399455 CCDC192P0DO97 292 aa9.17□□□□□ -0.94
USP47-203ENST00000399455 NEFHP12036 1026 aa9.17□□□□□ -0.94
USP47-203ENST00000399455 UNC5CLQ8IV45 518 aa9.17□□□□□ -0.94
USP47-203ENST00000399455 SMCR8Q8TEV9 937 aaPredicted RBP9.17□□□□□ -0.94
USP47-203ENST00000399455 SLC52A2Q9HAB3 445 aa9.17□□□□□ -0.94
USP47-203ENST00000399455 TRIM5Q9C035 493 aa9.17□□□□□ -0.94
USP47-203ENST00000399455 MCM5P33992 734 aa9.16□□□□□ -0.94
USP47-203ENST00000399455 MTHFSDQ2M296 383 aaKnown RBP9.16□□□□□ -0.94
USP47-203ENST00000399455 TEX11Q8IYF3 940 aa9.16□□□□□ -0.94
USP47-203ENST00000399455 SSH1Q8WYL5 1049 aa9.16□□□□□ -0.94
USP47-203ENST00000399455 SNRKQ9NRH2 765 aa9.16□□□□□ -0.94
USP47-203ENST00000399455 MCM9Q9NXL9 1143 aa9.16□□□□□ -0.94
USP47-203ENST00000399455 LMBR1LQ6UX01 489 aa9.16□□□□□ -0.94
USP47-203ENST00000399455 FAM114A1Q8IWE2 563 aa9.16□□□□□ -0.94
USP47-203ENST00000399455 K7ELQ4 463 aaPredicted RBP9.16□□□□□ -0.94
USP47-203ENST00000399455 TRIM37O94972 964 aa9.16□□□□□ -0.94
USP47-203ENST00000399455 IARSP41252 1262 aaKnown RBP9.16□□□□□ -0.94
USP47-203ENST00000399455 NBPF7P0C2Y1 421 aaPredicted RBP9.16□□□□□ -0.94
USP47-203ENST00000399455 TAF4BQ92750 862 aa9.16□□□□□ -0.94
USP47-203ENST00000399455 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.16□□□□□ -0.94
USP47-203ENST00000399455 ECM2O94769 699 aaPredicted RBP9.16□□□□□ -0.94
USP47-203ENST00000399455 RAB3GAP1Q15042 981 aa9.16□□□□□ -0.94
USP47-203ENST00000399455 PUM3Q15397 648 aaKnown RBP9.16□□□□□ -0.94
USP47-203ENST00000399455 HEATR3Q7Z4Q2 680 aa9.16□□□□□ -0.94
USP47-203ENST00000399455 BMP15O95972 392 aa9.15□□□□□ -0.94
USP47-203ENST00000399455 GCC2Q8IWJ2 1684 aa9.15□□□□□ -0.94
USP47-203ENST00000399455 FAM83GA6ND36 823 aa9.15□□□□□ -0.94
USP47-203ENST00000399455 DHX37Q8IY37 1157 aaKnown RBP9.15□□□□□ -0.94
USP47-203ENST00000399455 MAGEB6Q8N7X4 407 aa9.15□□□□□ -0.94
USP47-203ENST00000399455 ARHGEF12Q9NZN5 1544 aa9.15□□□□□ -0.94
USP47-203ENST00000399455 NAPAP54920 295 aa9.15□□□□□ -0.94
USP47-203ENST00000399455 KDM5AP29375 1690 aaKnown RBP9.15□□□□□ -0.95
USP47-203ENST00000399455 ZBTB24O43167 697 aaPredicted RBP9.15□□□□□ -0.95
USP47-203ENST00000399455 SMARCA5O60264 1052 aaPredicted RBP9.15□□□□□ -0.95
USP47-203ENST00000399455 ARMC9Q7Z3E5 817 aa9.15□□□□□ -0.95
USP47-203ENST00000399455 CCDC191Q8NCU4 936 aa9.15□□□□□ -0.95
USP47-203ENST00000399455 DDX11Q96FC9 970 aa9.15□□□□□ -0.95
USP47-203ENST00000399455 STX6O43752 255 aa9.15□□□□□ -0.95
USP47-203ENST00000399455 DKC1O60832 514 aaKnown RBP eCLIP9.15□□□□□ -0.95
USP47-203ENST00000399455 TEX35Q5T0J7 233 aa9.15□□□□□ -0.95
USP47-203ENST00000399455 CERKQ8TCT0 537 aa9.15□□□□□ -0.95
USP47-203ENST00000399455 JARID2Q92833 1246 aaPredicted RBP9.15□□□□□ -0.95
USP47-203ENST00000399455 IQSEC3Q9UPP2 1182 aaPredicted RBP9.15□□□□□ -0.95
USP47-203ENST00000399455 SSX2IPQ9Y2D8 614 aa9.15□□□□□ -0.95
USP47-203ENST00000399455 ZNF790Q6PG37 636 aa9.14□□□□□ -0.95
USP47-203ENST00000399455 CCDC172P0C7W6 258 aa9.14□□□□□ -0.95
USP47-203ENST00000399455 RARSP54136 660 aaKnown RBP9.14□□□□□ -0.95
USP47-203ENST00000399455 TMC4Q7Z404 712 aa9.14□□□□□ -0.95
USP47-203ENST00000399455 LINS1Q8NG48 757 aa9.14□□□□□ -0.95
USP47-203ENST00000399455 RBM28Q9NW13 759 aaKnown RBP9.14□□□□□ -0.95
USP47-203ENST00000399455 STK24Q9Y6E0 443 aa9.14□□□□□ -0.95
USP47-203ENST00000399455 PHACTR2O75167 634 aa9.14□□□□□ -0.95
USP47-203ENST00000399455 DALRD3Q5D0E6 543 aaKnown RBP9.14□□□□□ -0.95
USP47-203ENST00000399455 GIGYF2Q6Y7W6 1299 aaKnown RBP9.14□□□□□ -0.95
USP47-203ENST00000399455 EYA1Q99502 592 aa9.14□□□□□ -0.95
USP47-203ENST00000399455 ABT1Q9ULW3 272 aaKnown RBP9.14□□□□□ -0.95
USP47-203ENST00000399455 MROH5Q6ZUA9 1318 aa9.14□□□□□ -0.95
USP47-203ENST00000399455 CACNA2D4Q7Z3S7 1137 aa9.14□□□□□ -0.95
USP47-203ENST00000399455 A0A1W2PP64 1363 aa9.14□□□□□ -0.95
USP47-203ENST00000399455 DDX17Q92841 729 aaKnown RBP9.14□□□□□ -0.95
USP47-203ENST00000399455 GOLGA6L10A6NI86 522 aa9.14□□□□□ -0.95
USP47-203ENST00000399455 NOP56O00567 594 aaKnown RBP9.14□□□□□ -0.95
USP47-203ENST00000399455 ATP2B4P23634 1241 aa9.14□□□□□ -0.95
USP47-203ENST00000399455 IMPG2Q9BZV3 1241 aa9.14□□□□□ -0.95
USP47-203ENST00000399455 PAG1Q9NWQ8 432 aa9.14□□□□□ -0.95
USP47-203ENST00000399455 PARP1P09874 1014 aaKnown RBP9.13□□□□□ -0.95
USP47-203ENST00000399455 RTN1Q16799 776 aa9.13□□□□□ -0.95
USP47-203ENST00000399455 HSP90B2PQ58FF3 399 aa9.13□□□□□ -0.95
USP47-203ENST00000399455 SPOUT1Q5T280 376 aaKnown RBP9.13□□□□□ -0.95
USP47-203ENST00000399455 SLC9C2Q5TAH2 1124 aa9.13□□□□□ -0.95
USP47-203ENST00000399455 KANK3Q6NY19 840 aa9.13□□□□□ -0.95
USP47-203ENST00000399455 GLT8D2Q9H1C3 349 aa9.13□□□□□ -0.95
USP47-203ENST00000399455 HACE1Q8IYU2 909 aa9.13□□□□□ -0.95
USP47-203ENST00000399455 ARHGAP45Q92619 1136 aa9.13□□□□□ -0.95
USP47-203ENST00000399455 ZEB2O60315 1214 aa9.13□□□□□ -0.95
USP47-203ENST00000399455 OSBPP22059 807 aa9.13□□□□□ -0.95
USP47-203ENST00000399455 NOP2P46087 812 aaKnown RBP9.13□□□□□ -0.95
USP47-203ENST00000399455 SLC26A6Q9BXS9 759 aa9.13□□□□□ -0.95
USP47-203ENST00000399455 ITGA6P23229 1130 aa9.13□□□□□ -0.95
USP47-203ENST00000399455 KIAA1328Q86T90 577 aa9.13□□□□□ -0.95
USP47-203ENST00000399455 CDAN1Q8IWY9 1227 aa9.13□□□□□ -0.95
USP47-203ENST00000399455 SYNCQ9H7C4 482 aa9.13□□□□□ -0.95
USP47-203ENST00000399455 PNMA2Q9UL42 364 aa9.13□□□□□ -0.95
USP47-203ENST00000399455 MLH3Q9UHC1 1453 aa9.13□□□□□ -0.95
USP47-203ENST00000399455 KRT13P13646 458 aa9.13□□□□□ -0.95
USP47-203ENST00000399455 RBM6P78332 1123 aaKnown RBP9.13□□□□□ -0.95
USP47-203ENST00000399455 MCMDC2Q4G0Z9 681 aa9.13□□□□□ -0.95
USP47-203ENST00000399455 EZRP15311 586 aaKnown RBP9.12□□□□□ -0.95
USP47-203ENST00000399455 CCDC82Q8N4S0 544 aa9.12□□□□□ -0.95
USP47-203ENST00000399455 PUF60Q9UHX1 559 aaKnown RBP9.12□□□□□ -0.95
USP47-203ENST00000399455 MAP3K19Q56UN5 1328 aa9.12□□□□□ -0.95
USP47-203ENST00000399455 CALML3P27482 149 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms