RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 SLC39A6Q13433 755 aa12.49□□□□□ -0.41
CCDC40-204ENST00000397545 UVSSAQ2YD98 709 aa12.49□□□□□ -0.41
CCDC40-204ENST00000397545 CTDP1Q9Y5B0 961 aaPredicted RBP12.49□□□□□ -0.41
CCDC40-204ENST00000397545 DNA2P51530 1060 aa12.49□□□□□ -0.41
CCDC40-204ENST00000397545 KCNH5Q8NCM2 988 aa12.49□□□□□ -0.41
CCDC40-204ENST00000397545 ITSN1Q15811 1721 aa12.49□□□□□ -0.41
CCDC40-204ENST00000397545 IL17REQ8NFR9 667 aa12.49□□□□□ -0.41
CCDC40-204ENST00000397545 FAM200AQ8TCP9 573 aa12.49□□□□□ -0.41
CCDC40-204ENST00000397545 ORAI2Q96SN7 254 aa12.49□□□□□ -0.41
CCDC40-204ENST00000397545 KIF2AO00139 706 aaPredicted RBP12.48□□□□□ -0.41
CCDC40-204ENST00000397545 EIF3JO75822 258 aaKnown RBP12.48□□□□□ -0.41
CCDC40-204ENST00000397545 SKILP12757 684 aa12.48□□□□□ -0.41
CCDC40-204ENST00000397545 GSPT1P15170 499 aaKnown RBP12.48□□□□□ -0.41
CCDC40-204ENST00000397545 GTF2F1P35269 517 aaKnown RBP eCLIP12.48□□□□□ -0.41
CCDC40-204ENST00000397545 CHST3Q7LGC8 479 aa12.48□□□□□ -0.41
CCDC40-204ENST00000397545 KIAA1328Q86T90 577 aa12.48□□□□□ -0.41
CCDC40-204ENST00000397545 C17orf53Q8N3J3 647 aaPredicted RBP12.48□□□□□ -0.41
CCDC40-204ENST00000397545 PRM3Q9NNZ6 103 aa12.48□□□□□ -0.41
CCDC40-204ENST00000397545 HYPKQ9NX55 129 aa12.48□□□□□ -0.41
CCDC40-204ENST00000397545 ARHGEF10O15013 1369 aa12.48□□□□□ -0.41
CCDC40-204ENST00000397545 IFIT3O14879 490 aaKnown RBP12.48□□□□□ -0.41
CCDC40-204ENST00000397545 CTAGE5O15320 804 aa12.48□□□□□ -0.41
CCDC40-204ENST00000397545 CHAMP1Q96JM3 812 aa12.48□□□□□ -0.41
CCDC40-204ENST00000397545 CHMLP26374 656 aa12.48□□□□□ -0.41
CCDC40-204ENST00000397545 RBM25P49756 843 aaKnown RBP12.48□□□□□ -0.41
CCDC40-204ENST00000397545 STX1AQ16623 288 aa12.48□□□□□ -0.41
CCDC40-204ENST00000397545 CEP135Q66GS9 1140 aa12.48□□□□□ -0.41
CCDC40-204ENST00000397545 PRIMPOLQ96LW4 560 aa12.48□□□□□ -0.41
CCDC40-204ENST00000397545 IGSF1Q8N6C5 1336 aa12.48□□□□□ -0.41
CCDC40-204ENST00000397545 SNW1Q13573 536 aaKnown RBP12.48□□□□□ -0.41
CCDC40-204ENST00000397545 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.48□□□□□ -0.41
CCDC40-204ENST00000397545 ZSCAN12O43309 604 aa12.47□□□□□ -0.41
CCDC40-204ENST00000397545 HMGB1P09429 215 aaKnown RBP12.47□□□□□ -0.41
CCDC40-204ENST00000397545 SYT1P21579 422 aa12.47□□□□□ -0.41
CCDC40-204ENST00000397545 PTGS1P23219 599 aa12.47□□□□□ -0.41
CCDC40-204ENST00000397545 ANAPC15P60006 121 aa12.47□□□□□ -0.41
CCDC40-204ENST00000397545 IFIT5Q13325 482 aaKnown RBP12.47□□□□□ -0.41
CCDC40-204ENST00000397545 USP31Q70CQ4 1352 aa12.47□□□□□ -0.41
CCDC40-204ENST00000397545 ENOX2Q16206 610 aaKnown RBP12.47□□□□□ -0.41
CCDC40-204ENST00000397545 CWF19L2Q2TBE0 894 aaKnown RBP12.47□□□□□ -0.41
CCDC40-204ENST00000397545 AMOTQ4VCS5 1084 aa12.47□□□□□ -0.41
CCDC40-204ENST00000397545 TAF3Q5VWG9 929 aa12.47□□□□□ -0.41
CCDC40-204ENST00000397545 LGR6Q9HBX8 967 aa12.47□□□□□ -0.41
CCDC40-204ENST00000397545 RANBP6O60518 1105 aaKnown RBP12.47□□□□□ -0.41
CCDC40-204ENST00000397545 NBPF6Q5VWK0 638 aa12.47□□□□□ -0.41
CCDC40-204ENST00000397545 ZFP91Q96JP5 570 aaPredicted RBP12.47□□□□□ -0.41
CCDC40-204ENST00000397545 NBPF4Q96M43 638 aa12.47□□□□□ -0.41
CCDC40-204ENST00000397545 PHAXQ9H814 394 aaKnown RBP12.47□□□□□ -0.41
CCDC40-204ENST00000397545 CADPS2Q86UW7 1296 aa12.46□□□□□ -0.41
CCDC40-204ENST00000397545 LUZP1Q86V48 1076 aa12.46□□□□□ -0.41
CCDC40-204ENST00000397545 FBXO3Q9UK99 471 aa12.46□□□□□ -0.41
CCDC40-204ENST00000397545 SETD1BQ9UPS6 1966 aaKnown RBP12.46□□□□□ -0.41
CCDC40-204ENST00000397545 GOLGA8AA7E2F4 631 aa12.46□□□□□ -0.41
CCDC40-204ENST00000397545 GNG11P61952 73 aa12.46□□□□□ -0.41
CCDC40-204ENST00000397545 SOGA3Q5TF21 947 aa12.46□□□□□ -0.41
CCDC40-204ENST00000397545 RNF216Q9NWF9 866 aaPredicted RBP12.46□□□□□ -0.41
CCDC40-204ENST00000397545 SLC12A7Q9Y666 1083 aa12.46□□□□□ -0.41
CCDC40-204ENST00000397545 RTL1A6NKG5 1358 aa12.46□□□□□ -0.41
CCDC40-204ENST00000397545 MARCKSP29966 332 aaPredicted RBP12.46□□□□□ -0.42
CCDC40-204ENST00000397545 TYRO3Q06418 890 aa12.46□□□□□ -0.42
CCDC40-204ENST00000397545 COPS6Q7L5N1 327 aa12.46□□□□□ -0.42
CCDC40-204ENST00000397545 ANTXR1Q9H6X2 564 aa12.46□□□□□ -0.42
CCDC40-204ENST00000397545 AKAP2Q9Y2D5 859 aa12.46□□□□□ -0.42
CCDC40-204ENST00000397545 KIAA0232Q92628 1395 aa12.46□□□□□ -0.42
CCDC40-204ENST00000397545 LMOD1P29536 600 aaPredicted RBP12.45□□□□□ -0.42
CCDC40-204ENST00000397545 ODF2Q5BJF6 829 aa12.45□□□□□ -0.42
CCDC40-204ENST00000397545 KLF18A0A0U1RQI7 1052 aa12.45□□□□□ -0.42
CCDC40-204ENST00000397545 KIF5CO60282 957 aa12.45□□□□□ -0.42
CCDC40-204ENST00000397545 CASQ1P31415 396 aa12.45□□□□□ -0.42
CCDC40-204ENST00000397545 NMIQ13287 307 aaPredicted RBP12.45□□□□□ -0.42
CCDC40-204ENST00000397545 LDHAL6AQ6ZMR3 332 aa12.45□□□□□ -0.42
CCDC40-204ENST00000397545 XAGE3Q8WTP9 111 aa12.45□□□□□ -0.42
CCDC40-204ENST00000397545 WASF1Q92558 559 aa12.45□□□□□ -0.42
CCDC40-204ENST00000397545 C8orf37Q96NL8 207 aa12.45□□□□□ -0.42
CCDC40-204ENST00000397545 IARSP41252 1262 aaKnown RBP12.45□□□□□ -0.42
CCDC40-204ENST00000397545 USP5P45974 858 aa12.45□□□□□ -0.42
CCDC40-204ENST00000397545 ANKRD13DQ6ZTN6 518 aa12.45□□□□□ -0.42
CCDC40-204ENST00000397545 Q6ZUG5 572 aa12.45□□□□□ -0.42
CCDC40-204ENST00000397545 AOPEPQ8N6M6 819 aa12.45□□□□□ -0.42
CCDC40-204ENST00000397545 CRB1P82279 1406 aa12.45□□□□□ -0.42
CCDC40-204ENST00000397545 KCNQ3O43525 872 aa12.45□□□□□ -0.42
CCDC40-204ENST00000397545 CD2BP2O95400 341 aaKnown RBP12.45□□□□□ -0.42
CCDC40-204ENST00000397545 JAKMIP3Q5VZ66 844 aa12.45□□□□□ -0.42
CCDC40-204ENST00000397545 CRACR2AQ9BSW2 395 aa12.45□□□□□ -0.42
CCDC40-204ENST00000397545 DNAI1Q9UI46 699 aa12.45□□□□□ -0.42
CCDC40-204ENST00000397545 C3P01024 1663 aa12.44□□□□□ -0.42
CCDC40-204ENST00000397545 TOM1O60784 492 aa12.44□□□□□ -0.42
CCDC40-204ENST00000397545 MON2Q7Z3U7 1717 aa12.44□□□□□ -0.42
CCDC40-204ENST00000397545 IBSPP21815 317 aaPredicted RBP12.44□□□□□ -0.42
CCDC40-204ENST00000397545 GSDMDP57764 484 aa12.44□□□□□ -0.42
CCDC40-204ENST00000397545 TRMT112Q9UI30 125 aaKnown RBP12.44□□□□□ -0.42
CCDC40-204ENST00000397545 MAP3K5Q99683 1374 aa12.44□□□□□ -0.42
CCDC40-204ENST00000397545 DIP2AQ14689 1571 aa12.44□□□□□ -0.42
CCDC40-204ENST00000397545 LMBR1LQ6UX01 489 aa12.44□□□□□ -0.42
CCDC40-204ENST00000397545 CEP170BQ9Y4F5 1589 aaPredicted RBP12.44□□□□□ -0.42
CCDC40-204ENST00000397545 PNMA6EA0A0J9YXQ4 647 aa12.43□□□□□ -0.42
CCDC40-204ENST00000397545 GRM8O00222 908 aa12.43□□□□□ -0.42
CCDC40-204ENST00000397545 NEMFO60524 1076 aa12.43□□□□□ -0.42
CCDC40-204ENST00000397545 TSC1Q92574 1164 aa12.43□□□□□ -0.42
CCDC40-204ENST00000397545 STARD3NLO95772 234 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms