RNA–Protein interactions for RNA: ENST00000395682.3

SHMT1-204, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-204ENST00000395682 NBPF7P0C2Y1 421 aaPredicted RBP29.9■■■□□ 2.38
SHMT1-204ENST00000395682 CXCL9Q07325 125 aa29.9■■■□□ 2.38
SHMT1-204ENST00000395682 LMBR1LQ6UX01 489 aa29.9■■■□□ 2.38
SHMT1-204ENST00000395682 SMC1BQ8NDV3 1235 aa29.9■■■□□ 2.38
SHMT1-204ENST00000395682 GPR101Q96P66 508 aaPredicted RBP29.9■■■□□ 2.38
SHMT1-204ENST00000395682 HACL1Q9UJ83 578 aa29.9■■■□□ 2.38
SHMT1-204ENST00000395682 XDHP47989 1333 aa29.9■■■□□ 2.38
SHMT1-204ENST00000395682 HSPA6P17066 643 aa29.89■■■□□ 2.38
SHMT1-204ENST00000395682 ZC3H12CQ9C0D7 883 aaKnown RBP29.89■■■□□ 2.38
SHMT1-204ENST00000395682 TAF1DQ9H5J8 278 aaPredicted RBP29.89■■■□□ 2.38
SHMT1-204ENST00000395682 IFIT5Q13325 482 aaKnown RBP29.88■■■□□ 2.37
SHMT1-204ENST00000395682 MPHOSPH8Q99549 860 aa29.88■■■□□ 2.37
SHMT1-204ENST00000395682 UTYO14607 1347 aa29.88■■■□□ 2.37
SHMT1-204ENST00000395682 RAD17O75943 681 aa29.87■■■□□ 2.37
SHMT1-204ENST00000395682 SUCLG2Q96I99 432 aa29.87■■■□□ 2.37
SHMT1-204ENST00000395682 DBNDD1Q9H9R9 158 aa29.87■■■□□ 2.37
SHMT1-204ENST00000395682 YDJCA8MPS7 323 aa29.86■■■□□ 2.37
SHMT1-204ENST00000395682 ATP2B4P23634 1241 aa29.86■■■□□ 2.37
SHMT1-204ENST00000395682 DOK7Q18PE1 504 aa29.86■■■□□ 2.37
SHMT1-204ENST00000395682 CIAPIN1Q6FI81 312 aa29.86■■■□□ 2.37
SHMT1-204ENST00000395682 API5Q9BZZ5 524 aaKnown RBP29.86■■■□□ 2.37
SHMT1-204ENST00000395682 LTBP1Q14766 1721 aa29.85■■■□□ 2.37
SHMT1-204ENST00000395682 EPHX2P34913 555 aa29.85■■■□□ 2.37
SHMT1-204ENST00000395682 TNIP1Q15025 636 aa29.85■■■□□ 2.37
SHMT1-204ENST00000395682 KAZALD1Q96I82 304 aa29.85■■■□□ 2.37
SHMT1-204ENST00000395682 USP44Q9H0E7 712 aa29.85■■■□□ 2.37
SHMT1-204ENST00000395682 ZBED9Q6R2W3 1325 aa29.85■■■□□ 2.37
SHMT1-204ENST00000395682 SCN4AP35499 1836 aa29.85■■■□□ 2.37
SHMT1-204ENST00000395682 POTEIP0CG38 1075 aa29.84■■■□□ 2.37
SHMT1-204ENST00000395682 POTEJP0CG39 1038 aa29.84■■■□□ 2.37
SHMT1-204ENST00000395682 LMOD1P29536 600 aaPredicted RBP29.84■■■□□ 2.37
SHMT1-204ENST00000395682 CCDC57Q2TAC2 916 aa29.84■■■□□ 2.37
SHMT1-204ENST00000395682 WTIPA6NIX2 430 aaPredicted RBP29.83■■■□□ 2.37
SHMT1-204ENST00000395682 G3V3G9 751 aa29.83■■■□□ 2.37
SHMT1-204ENST00000395682 CCT4P50991 539 aaKnown RBP29.83■■■□□ 2.37
SHMT1-204ENST00000395682 SCNN1DP51172 638 aa29.83■■■□□ 2.37
SHMT1-204ENST00000395682 DCAF8Q5TAQ9 597 aa29.83■■■□□ 2.37
SHMT1-204ENST00000395682 ECE2O60344 883 aa29.82■■■□□ 2.36
SHMT1-204ENST00000395682 EAPPQ56P03 285 aaPredicted RBP29.82■■■□□ 2.36
SHMT1-204ENST00000395682 ANKRD2Q9GZV1 360 aa29.82■■■□□ 2.36
SHMT1-204ENST00000395682 KIF16BQ96L93 1317 aa29.81■■■□□ 2.36
SHMT1-204ENST00000395682 EPS15P42566 896 aa29.81■■■□□ 2.36
SHMT1-204ENST00000395682 TAF7LQ5H9L4 462 aa29.81■■■□□ 2.36
SHMT1-204ENST00000395682 CHADLQ6NUI6 762 aa29.81■■■□□ 2.36
SHMT1-204ENST00000395682 PNMA8AQ86V59 439 aaPredicted RBP29.81■■■□□ 2.36
SHMT1-204ENST00000395682 ARHGAP45Q92619 1136 aa29.81■■■□□ 2.36
SHMT1-204ENST00000395682 BICC1Q9H694 974 aaKnown RBP29.81■■■□□ 2.36
SHMT1-204ENST00000395682 BCAR3O75815 825 aa29.8■■■□□ 2.36
SHMT1-204ENST00000395682 GMPSP49915 693 aaPredicted RBP29.8■■■□□ 2.36
SHMT1-204ENST00000395682 ZNF594Q96JF6 807 aaPredicted RBP29.8■■■□□ 2.36
SHMT1-204ENST00000395682 KCNQ5Q9NR82 932 aa29.8■■■□□ 2.36
SHMT1-204ENST00000395682 SPEF2Q9C093 1822 aa29.8■■■□□ 2.36
SHMT1-204ENST00000395682 CHRNDQ07001 517 aa29.79■■■□□ 2.36
SHMT1-204ENST00000395682 LDHDQ86WU2 507 aa29.79■■■□□ 2.36
SHMT1-204ENST00000395682 CLEC11AQ9Y240 323 aa29.79■■■□□ 2.36
SHMT1-204ENST00000395682 LEMD3Q9Y2U8 911 aa29.79■■■□□ 2.36
SHMT1-204ENST00000395682 IPO8O15397 1037 aaKnown RBP29.78■■■□□ 2.36
SHMT1-204ENST00000395682 APLP1P51693 650 aa29.78■■■□□ 2.36
SHMT1-204ENST00000395682 GPRC5DQ9NZD1 345 aa29.78■■■□□ 2.36
SHMT1-204ENST00000395682 PSMD14O00487 310 aa29.77■■■□□ 2.36
SHMT1-204ENST00000395682 RABL6Q3YEC7 729 aaPredicted RBP29.77■■■□□ 2.36
SHMT1-204ENST00000395682 LDHAL6AQ6ZMR3 332 aa29.77■■■□□ 2.36
SHMT1-204ENST00000395682 ANKRD44Q8N8A2 993 aa29.77■■■□□ 2.36
SHMT1-204ENST00000395682 HELBQ8NG08 1087 aaPredicted RBP29.76■■■□□ 2.35
SHMT1-204ENST00000395682 FRAT1Q92837 279 aaPredicted RBP29.76■■■□□ 2.35
SHMT1-204ENST00000395682 ZNF804BA4D1E1 1349 aa29.75■■■□□ 2.35
SHMT1-204ENST00000395682 TAF5LO75529 589 aa29.74■■■□□ 2.35
SHMT1-204ENST00000395682 KCNJ4P48050 445 aa29.74■■■□□ 2.35
SHMT1-204ENST00000395682 CNNM1Q9NRU3 951 aa29.74■■■□□ 2.35
SHMT1-204ENST00000395682 ZBTB12Q9Y330 459 aaPredicted RBP29.74■■■□□ 2.35
SHMT1-204ENST00000395682 MED23Q9ULK4 1368 aa29.74■■■□□ 2.35
SHMT1-204ENST00000395682 USP50Q70EL3 339 aaPredicted RBP29.73■■■□□ 2.35
SHMT1-204ENST00000395682 ADARB2Q9NS39 739 aaKnown RBP29.73■■■□□ 2.35
SHMT1-204ENST00000395682 CNOT7Q9UIV1 285 aaKnown RBP29.73■■■□□ 2.35
SHMT1-204ENST00000395682 PODNQ7Z5L7 613 aa29.72■■■□□ 2.35
SHMT1-204ENST00000395682 TXNRD3Q86VQ6 643 aa29.72■■■□□ 2.35
SHMT1-204ENST00000395682 VIL1P09327 827 aaKnown RBP29.71■■■□□ 2.35
SHMT1-204ENST00000395682 UBTFL1P0CB47 393 aaPredicted RBP29.71■■■□□ 2.35
SHMT1-204ENST00000395682 TRIM27P14373 513 aa29.71■■■□□ 2.35
SHMT1-204ENST00000395682 INTS3Q68E01 1043 aaKnown RBP29.71■■■□□ 2.35
SHMT1-204ENST00000395682 ATF7IPQ6VMQ6 1270 aa29.71■■■□□ 2.35
SHMT1-204ENST00000395682 DPF2Q92785 391 aa29.71■■■□□ 2.35
SHMT1-204ENST00000395682 SNAP23O00161 211 aa29.7■■■□□ 2.35
SHMT1-204ENST00000395682 PLIN1O60240 522 aa29.7■■■□□ 2.35
SHMT1-204ENST00000395682 PUS3Q9BZE2 481 aaKnown RBP29.7■■■□□ 2.35
SHMT1-204ENST00000395682 CEP350Q5VT06 3117 aa29.7■■■□□ 2.34
SHMT1-204ENST00000395682 H7C1D1 291 aa29.69■■■□□ 2.34
SHMT1-204ENST00000395682 RPS12P25398 132 aaKnown RBP29.69■■■□□ 2.34
SHMT1-204ENST00000395682 KLRK1P26718 216 aa29.69■■■□□ 2.34
SHMT1-204ENST00000395682 MAP1SQ66K74 1059 aaPredicted RBP29.69■■■□□ 2.34
SHMT1-204ENST00000395682 COA1Q9GZY4 146 aa29.69■■■□□ 2.34
SHMT1-204ENST00000395682 TNNQ9UQP3 1299 aa29.69■■■□□ 2.34
SHMT1-204ENST00000395682 SHTN1A0MZ66 631 aa29.68■■■□□ 2.34
SHMT1-204ENST00000395682 ZKSCAN2Q63HK3 967 aa29.68■■■□□ 2.34
SHMT1-204ENST00000395682 MICALL2Q8IY33 904 aa29.68■■■□□ 2.34
SHMT1-204ENST00000395682 HTRA3P83110 453 aa29.67■■■□□ 2.34
SHMT1-204ENST00000395682 CNTROBQ8N137 903 aa29.67■■■□□ 2.34
SHMT1-204ENST00000395682 CLUAP1Q96AJ1 413 aa29.67■■■□□ 2.34
SHMT1-204ENST00000395682 HDAC5Q9UQL6 1122 aa29.67■■■□□ 2.34
SHMT1-204ENST00000395682 USP17L3A6NCW0 530 aa29.66■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms