RNA–Protein interactions for RNA: ENST00000395454.6

SCAF11-204, Transcript of SR-related CTD associated factor 11, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF11, Length 1,931 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-204ENST00000395454 TAF7LQ5H9L4 462 aa18.47■□□□□ 0.55
SCAF11-204ENST00000395454 KLHDC4Q8TBB5 520 aa18.47■□□□□ 0.55
SCAF11-204ENST00000395454 CD2APQ9Y5K6 639 aa18.47■□□□□ 0.55
SCAF11-204ENST00000395454 ZNF622Q969S3 477 aaKnown RBP eCLIP18.46■□□□□ 0.552e-9■□□□□ 9
SCAF11-204ENST00000395454 MASTLQ96GX5 879 aa18.46■□□□□ 0.55
SCAF11-204ENST00000395454 RBM17Q96I25 401 aaKnown RBP18.46■□□□□ 0.55
SCAF11-204ENST00000395454 A0A0G2JLW4 131 aa18.45■□□□□ 0.54
SCAF11-204ENST00000395454 NPR1P16066 1061 aa18.45■□□□□ 0.54
SCAF11-204ENST00000395454 DAXXQ9UER7 740 aaPredicted RBP18.45■□□□□ 0.54
SCAF11-204ENST00000395454 RTL9Q8NET4 1388 aa18.45■□□□□ 0.54
SCAF11-204ENST00000395454 TGFB2P61812 414 aa18.45■□□□□ 0.54
SCAF11-204ENST00000395454 CASC1Q6TDU7 716 aa18.45■□□□□ 0.54
SCAF11-204ENST00000395454 PI4K2BQ8TCG2 481 aa18.45■□□□□ 0.54
SCAF11-204ENST00000395454 ZNF594Q96JF6 807 aaPredicted RBP18.45■□□□□ 0.54
SCAF11-204ENST00000395454 CDC5LQ99459 802 aaKnown RBP18.45■□□□□ 0.54
SCAF11-204ENST00000395454 KIF2CQ99661 725 aa18.45■□□□□ 0.54
SCAF11-204ENST00000395454 FHDC1Q9C0D6 1143 aaPredicted RBP18.45■□□□□ 0.54
SCAF11-204ENST00000395454 DPEP1P16444 411 aa18.44■□□□□ 0.54
SCAF11-204ENST00000395454 CELF1Q92879 486 aaKnown RBP18.44■□□□□ 0.54
SCAF11-204ENST00000395454 IL1RAPL2Q9NP60 686 aa18.44■□□□□ 0.54
SCAF11-204ENST00000395454 PA2G4Q9UQ80 394 aaKnown RBP18.44■□□□□ 0.54
SCAF11-204ENST00000395454 TTC41PQ6P2S7 1318 aa18.44■□□□□ 0.54
SCAF11-204ENST00000395454 SLC4A3P48751 1232 aa18.43■□□□□ 0.54
SCAF11-204ENST00000395454 TBC1D2Q9BYX2 928 aa18.43■□□□□ 0.54
SCAF11-204ENST00000395454 SIL1Q9H173 461 aa18.43■□□□□ 0.54
SCAF11-204ENST00000395454 HOXA10P31260 410 aaPredicted RBP18.43■□□□□ 0.54
SCAF11-204ENST00000395454 IGHMBP2P38935 993 aaKnown RBP18.43■□□□□ 0.54
SCAF11-204ENST00000395454 RFX5P48382 616 aaPredicted RBP18.43■□□□□ 0.54
SCAF11-204ENST00000395454 PTPN12Q05209 780 aaKnown RBP18.43■□□□□ 0.54
SCAF11-204ENST00000395454 GRAPQ13588 217 aa18.43■□□□□ 0.54
SCAF11-204ENST00000395454 ANKRD18AQ8IVF6 992 aa18.43■□□□□ 0.54
SCAF11-204ENST00000395454 GRAPLQ8TC17 118 aaPredicted RBP18.43■□□□□ 0.54
SCAF11-204ENST00000395454 SNX21Q969T3 373 aa18.43■□□□□ 0.54
SCAF11-204ENST00000395454 MPHOSPH8Q99549 860 aa18.43■□□□□ 0.54
SCAF11-204ENST00000395454 COPRSQ9NQ92 184 aa18.43■□□□□ 0.54
SCAF11-204ENST00000395454 ALDH1B1P30837 517 aa18.42■□□□□ 0.54
SCAF11-204ENST00000395454 NLGN2Q8NFZ4 835 aa18.42■□□□□ 0.54
SCAF11-204ENST00000395454 WWC3Q9ULE0 1092 aa18.42■□□□□ 0.54
SCAF11-204ENST00000395454 COL4A1P02462 1669 aa18.42■□□□□ 0.54
SCAF11-204ENST00000395454 CACNA1SQ13698 1873 aa18.42■□□□□ 0.54
SCAF11-204ENST00000395454 RPS8P62241 208 aaKnown RBP18.41■□□□□ 0.54
SCAF11-204ENST00000395454 STYK1Q6J9G0 422 aa18.41■□□□□ 0.54
SCAF11-204ENST00000395454 LDHAL6AQ6ZMR3 332 aa18.41■□□□□ 0.54
SCAF11-204ENST00000395454 CRAMP1Q96RY5 1269 aa18.41■□□□□ 0.54
SCAF11-204ENST00000395454 SPEF2Q9C093 1822 aa18.41■□□□□ 0.54
SCAF11-204ENST00000395454 KCNA3P22001 575 aa18.41■□□□□ 0.54
SCAF11-204ENST00000395454 CLASRPQ8N2M8 674 aaKnown RBP18.41■□□□□ 0.54
SCAF11-204ENST00000395454 USP26Q9BXU7 913 aa18.41■□□□□ 0.54
SCAF11-204ENST00000395454 DLEC1Q9Y238 1755 aa18.4■□□□□ 0.54
SCAF11-204ENST00000395454 KIAA1551Q9HCM1 1747 aa18.4■□□□□ 0.54
SCAF11-204ENST00000395454 SASH1O94885 1247 aa18.4■□□□□ 0.54
SCAF11-204ENST00000395454 TSHZ3Q63HK5 1081 aa18.4■□□□□ 0.54
SCAF11-204ENST00000395454 CNKSR1Q969H4 720 aa18.4■□□□□ 0.54
SCAF11-204ENST00000395454 CNNM1Q9NRU3 951 aa18.4■□□□□ 0.54
SCAF11-204ENST00000395454 ERC2O15083 957 aa18.39■□□□□ 0.53
SCAF11-204ENST00000395454 EPB41L2O43491 1005 aaKnown RBP18.39■□□□□ 0.53
SCAF11-204ENST00000395454 REC8O95072 547 aa18.39■□□□□ 0.53
SCAF11-204ENST00000395454 SYT17Q9BSW7 474 aa18.39■□□□□ 0.53
SCAF11-204ENST00000395454 LRP5O75197 1615 aa18.39■□□□□ 0.53
SCAF11-204ENST00000395454 OS9Q13438 667 aaPredicted RBP18.39■□□□□ 0.53
SCAF11-204ENST00000395454 LRRC24Q50LG9 513 aa18.39■□□□□ 0.53
SCAF11-204ENST00000395454 PRPF40BQ6NWY9 871 aaKnown RBP18.39■□□□□ 0.53
SCAF11-204ENST00000395454 TTLL6Q8N841 843 aa18.39■□□□□ 0.53
SCAF11-204ENST00000395454 PUS3Q9BZE2 481 aaKnown RBP18.39■□□□□ 0.53
SCAF11-204ENST00000395454 PIM2Q9P1W9 311 aa18.39■□□□□ 0.53
SCAF11-204ENST00000395454 PPEF1O14829 653 aaPredicted RBP18.38■□□□□ 0.53
SCAF11-204ENST00000395454 BBOX1O75936 387 aa18.38■□□□□ 0.53
SCAF11-204ENST00000395454 BSDC1Q9NW68 430 aaPredicted RBP18.38■□□□□ 0.53
SCAF11-204ENST00000395454 EYA2O00167 538 aa18.37■□□□□ 0.53
SCAF11-204ENST00000395454 GLRX3O76003 335 aaKnown RBP18.37■□□□□ 0.53
SCAF11-204ENST00000395454 CHMLP26374 656 aa18.37■□□□□ 0.53
SCAF11-204ENST00000395454 G3BP1Q13283 466 aaKnown RBP eCLIP18.37■□□□□ 0.53
SCAF11-204ENST00000395454 SLX4Q8IY92 1834 aa18.37■□□□□ 0.53
SCAF11-204ENST00000395454 ESYT1Q9BSJ8 1104 aa18.37■□□□□ 0.53
SCAF11-204ENST00000395454 ANTXR1Q9H6X2 564 aa18.37■□□□□ 0.53
SCAF11-204ENST00000395454 BRCA1P38398 1863 aaKnown RBP18.36■□□□□ 0.53
SCAF11-204ENST00000395454 SLC51AQ86UW1 340 aa18.36■□□□□ 0.53
SCAF11-204ENST00000395454 IL17RAQ96F46 866 aa18.36■□□□□ 0.53
SCAF11-204ENST00000395454 BCL11AQ9H165 835 aa18.36■□□□□ 0.53
SCAF11-204ENST00000395454 ECHDC1Q9NTX5 307 aa18.36■□□□□ 0.53
SCAF11-204ENST00000395454 ZNF219Q9P2Y4 722 aaPredicted RBP18.36■□□□□ 0.53
SCAF11-204ENST00000395454 FBXO3Q9UK99 471 aa18.35■□□□□ 0.53
SCAF11-204ENST00000395454 CIAO1O76071 339 aa18.35■□□□□ 0.53
SCAF11-204ENST00000395454 IL15P40933 162 aaPredicted RBP18.35■□□□□ 0.53
SCAF11-204ENST00000395454 DALRD3Q5D0E6 543 aaKnown RBP18.35■□□□□ 0.53
SCAF11-204ENST00000395454 ATG9AQ7Z3C6 839 aa18.35■□□□□ 0.53
SCAF11-204ENST00000395454 GPATCH3Q96I76 525 aa18.35■□□□□ 0.53
SCAF11-204ENST00000395454 TMX4Q9H1E5 349 aaPredicted RBP18.35■□□□□ 0.53
SCAF11-204ENST00000395454 RIPOR2Q9Y4F9 1068 aa18.35■□□□□ 0.53
SCAF11-204ENST00000395454 METTL24Q5JXM2 366 aa18.34■□□□□ 0.53
SCAF11-204ENST00000395454 OLFM4Q6UX06 510 aa18.34■□□□□ 0.53
SCAF11-204ENST00000395454 TMC4Q7Z404 712 aa18.34■□□□□ 0.53
SCAF11-204ENST00000395454 EAF2Q96CJ1 260 aaPredicted RBP18.34■□□□□ 0.53
SCAF11-204ENST00000395454 MINPP1Q9UNW1 487 aa18.34■□□□□ 0.53
SCAF11-204ENST00000395454 BCS1LQ9Y276 419 aa18.34■□□□□ 0.53
SCAF11-204ENST00000395454 ATP6V0A2Q9Y487 856 aa18.34■□□□□ 0.53
SCAF11-204ENST00000395454 C21orf2O43822 256 aa18.33■□□□□ 0.53
SCAF11-204ENST00000395454 CHRNDQ07001 517 aa18.33■□□□□ 0.53
SCAF11-204ENST00000395454 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.33■□□□□ 0.53
SCAF11-204ENST00000395454 MROH5Q6ZUA9 1318 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms