RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 CTAGE5O15320 804 aa18.83■□□□□ 0.6
PCDH1-203ENST00000394536 ZNF75DP51815 510 aa18.83■□□□□ 0.6
PCDH1-203ENST00000394536 NECTIN1Q15223 517 aa18.83■□□□□ 0.6
PCDH1-203ENST00000394536 TNNI3KQ59H18 835 aa18.83■□□□□ 0.6
PCDH1-203ENST00000394536 FPGT-TNNI3KV9GXZ4 949 aa18.83■□□□□ 0.6
PCDH1-203ENST00000394536 PPLO60437 1756 aa18.82■□□□□ 0.6
PCDH1-203ENST00000394536 GCKRQ14397 625 aa18.82■□□□□ 0.6
PCDH1-203ENST00000394536 SAFBQ15424 915 aaKnown RBP eCLIP18.82■□□□□ 0.6
PCDH1-203ENST00000394536 DHX32Q7L7V1 743 aaKnown RBP18.82■□□□□ 0.6
PCDH1-203ENST00000394536 ZNF496Q96IT1 587 aaPredicted RBP18.82■□□□□ 0.6
PCDH1-203ENST00000394536 CLSTN2Q9H4D0 955 aa18.82■□□□□ 0.6
PCDH1-203ENST00000394536 CTNNA3Q9UI47 895 aa18.82■□□□□ 0.6
PCDH1-203ENST00000394536 KLF18A0A0U1RQI7 1052 aa18.82■□□□□ 0.6
PCDH1-203ENST00000394536 CCDC69A6NI79 296 aa18.82■□□□□ 0.6
PCDH1-203ENST00000394536 LMOD1P29536 600 aaPredicted RBP18.82■□□□□ 0.6
PCDH1-203ENST00000394536 MRVI1Q9Y6F6 885 aa18.82■□□□□ 0.6
PCDH1-203ENST00000394536 MAP2P11137 1827 aaKnown RBP18.81■□□□□ 0.6
PCDH1-203ENST00000394536 IFNL2Q8IZJ0 200 aa18.81■□□□□ 0.6
PCDH1-203ENST00000394536 ZNF594Q96JF6 807 aaPredicted RBP18.81■□□□□ 0.6
PCDH1-203ENST00000394536 PAG1Q9NWQ8 432 aa18.81■□□□□ 0.6
PCDH1-203ENST00000394536 KIAA1524Q8TCG1 905 aa18.81■□□□□ 0.6
PCDH1-203ENST00000394536 RXRAP19793 462 aa18.81■□□□□ 0.6
PCDH1-203ENST00000394536 SLFNL1Q499Z3 407 aa18.81■□□□□ 0.6
PCDH1-203ENST00000394536 ZBTB9Q96C00 473 aa18.81■□□□□ 0.6
PCDH1-203ENST00000394536 MICU3Q86XE3 530 aa18.8■□□□□ 0.6
PCDH1-203ENST00000394536 CCDC34Q96HJ3 373 aa18.8■□□□□ 0.6
PCDH1-203ENST00000394536 ZNF213O14771 459 aa18.8■□□□□ 0.6
PCDH1-203ENST00000394536 CHGBP05060 677 aa18.8■□□□□ 0.6
PCDH1-203ENST00000394536 TAF5LO75529 589 aa18.79■□□□□ 0.6
PCDH1-203ENST00000394536 GPTP24298 496 aa18.79■□□□□ 0.6
PCDH1-203ENST00000394536 URI1O94763 535 aaPredicted RBP18.79■□□□□ 0.6
PCDH1-203ENST00000394536 NUP133Q8WUM0 1156 aa18.79■□□□□ 0.6
PCDH1-203ENST00000394536 FRMPD1Q5SYB0 1578 aa18.79■□□□□ 0.6
PCDH1-203ENST00000394536 ARHGEF28Q8N1W1 1705 aaKnown RBP18.79■□□□□ 0.6
PCDH1-203ENST00000394536 NEURL1BA8MQ27 555 aa18.79■□□□□ 0.6
PCDH1-203ENST00000394536 METTL24Q5JXM2 366 aa18.79■□□□□ 0.6
PCDH1-203ENST00000394536 MRPS27Q92552 414 aaKnown RBP18.79■□□□□ 0.6
PCDH1-203ENST00000394536 DBNLQ9UJU6 430 aaKnown RBP18.79■□□□□ 0.6
PCDH1-203ENST00000394536 TAF6LQ9Y6J9 622 aa18.79■□□□□ 0.6
PCDH1-203ENST00000394536 ZSCAN25Q6NSZ9 544 aa18.78■□□□□ 0.6
PCDH1-203ENST00000394536 PRDM11Q9NQV5 511 aa18.78■□□□□ 0.6
PCDH1-203ENST00000394536 TBC1D2BQ9UPU7 963 aa18.78■□□□□ 0.6
PCDH1-203ENST00000394536 RPAP1Q9BWH6 1393 aaPredicted RBP18.78■□□□□ 0.6
PCDH1-203ENST00000394536 JMYQ8N9B5 988 aa18.78■□□□□ 0.6
PCDH1-203ENST00000394536 GTF3C6Q969F1 213 aa18.78■□□□□ 0.6
PCDH1-203ENST00000394536 USP28Q96RU2 1077 aa18.78■□□□□ 0.6
PCDH1-203ENST00000394536 METTL22Q9BUU2 404 aaPredicted RBP18.78■□□□□ 0.6
PCDH1-203ENST00000394536 CWC25Q9NXE8 425 aaPredicted RBP18.78■□□□□ 0.6
PCDH1-203ENST00000394536 PAXBP1Q9Y5B6 917 aa18.78■□□□□ 0.6
PCDH1-203ENST00000394536 KAT6BQ8WYB5 2073 aa18.78■□□□□ 0.6
PCDH1-203ENST00000394536 SNW1Q13573 536 aaKnown RBP18.77■□□□□ 0.6
PCDH1-203ENST00000394536 NEURL4Q96JN8 1562 aa18.77■□□□□ 0.6
PCDH1-203ENST00000394536 TMEM87AQ8NBN3 555 aa18.77■□□□□ 0.6
PCDH1-203ENST00000394536 UBXN4Q92575 508 aa18.77■□□□□ 0.6
PCDH1-203ENST00000394536 ARGLU1Q9NWB6 273 aaPredicted RBP18.77■□□□□ 0.6
PCDH1-203ENST00000394536 IFNKQ9P0W0 207 aa18.77■□□□□ 0.6
PCDH1-203ENST00000394536 ERICH2A1L162 156 aa18.77■□□□□ 0.59
PCDH1-203ENST00000394536 CYP21A2P08686 494 aa18.77■□□□□ 0.59
PCDH1-203ENST00000394536 HOOK1Q9UJC3 728 aaKnown RBP18.76■□□□□ 0.59
PCDH1-203ENST00000394536 SALL3Q9BXA9 1300 aa18.76■□□□□ 0.59
PCDH1-203ENST00000394536 CAVIN2O95810 425 aa18.76■□□□□ 0.59
PCDH1-203ENST00000394536 DDX17Q92841 729 aaKnown RBP18.76■□□□□ 0.59
PCDH1-203ENST00000394536 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.76■□□□□ 0.59
PCDH1-203ENST00000394536 EPHA10Q5JZY3 1008 aa18.76■□□□□ 0.59
PCDH1-203ENST00000394536 CACTINQ8WUQ7 758 aaKnown RBP18.75■□□□□ 0.59
PCDH1-203ENST00000394536 CGNQ9P2M7 1197 aaKnown RBP18.75■□□□□ 0.59
PCDH1-203ENST00000394536 SMTNL1A8MU46 457 aa18.75■□□□□ 0.59
PCDH1-203ENST00000394536 ARID5BQ14865 1188 aa18.75■□□□□ 0.59
PCDH1-203ENST00000394536 MTMR7Q9Y216 660 aa18.75■□□□□ 0.59
PCDH1-203ENST00000394536 TULP1O00294 542 aaPredicted RBP18.75■□□□□ 0.59
PCDH1-203ENST00000394536 PRC1O43663 620 aa18.74■□□□□ 0.59
PCDH1-203ENST00000394536 SCRN1Q12765 414 aa18.74■□□□□ 0.59
PCDH1-203ENST00000394536 KLHL10Q6JEL2 608 aa18.74■□□□□ 0.59
PCDH1-203ENST00000394536 DIP2CQ9Y2E4 1556 aa18.74■□□□□ 0.59
PCDH1-203ENST00000394536 SPTLC2O15270 562 aa18.74■□□□□ 0.59
PCDH1-203ENST00000394536 NEMFO60524 1076 aa18.74■□□□□ 0.59
PCDH1-203ENST00000394536 KBTBD3Q8NAB2 608 aa18.74■□□□□ 0.59
PCDH1-203ENST00000394536 ATP5JP18859 108 aa18.74■□□□□ 0.59
PCDH1-203ENST00000394536 GTF2E1P29083 439 aaPredicted RBP18.74■□□□□ 0.59
PCDH1-203ENST00000394536 FAM160A1Q05DH4 1040 aa18.74■□□□□ 0.59
PCDH1-203ENST00000394536 IFIT5Q13325 482 aaKnown RBP18.74■□□□□ 0.59
PCDH1-203ENST00000394536 NAA30Q147X3 362 aaPredicted RBP18.74■□□□□ 0.59
PCDH1-203ENST00000394536 KIF6Q6ZMV9 814 aa18.74■□□□□ 0.59
PCDH1-203ENST00000394536 LDHAL6AQ6ZMR3 332 aa18.73■□□□□ 0.59
PCDH1-203ENST00000394536 DNAI1Q9UI46 699 aa18.73■□□□□ 0.59
PCDH1-203ENST00000394536 KDRP35968 1356 aa18.73■□□□□ 0.59
PCDH1-203ENST00000394536 SMAP1Q8IYB5 467 aaPredicted RBP18.73■□□□□ 0.59
PCDH1-203ENST00000394536 A0A1B0GUL7 405 aa18.73■□□□□ 0.59
PCDH1-203ENST00000394536 A1BGP04217 495 aa18.73■□□□□ 0.59
PCDH1-203ENST00000394536 SYT10Q6XYQ8 523 aa18.73■□□□□ 0.59
PCDH1-203ENST00000394536 TRERF1Q96PN7 1200 aa18.73■□□□□ 0.59
PCDH1-203ENST00000394536 USP32Q8NFA0 1604 aa18.73■□□□□ 0.59
PCDH1-203ENST00000394536 TOP1P11387 765 aaKnown RBP18.72■□□□□ 0.59
PCDH1-203ENST00000394536 TOB2Q14106 344 aaPredicted RBP18.72■□□□□ 0.59
PCDH1-203ENST00000394536 CNNM3Q8NE01 707 aa18.72■□□□□ 0.59
PCDH1-203ENST00000394536 CPLX3Q8WVH0 158 aa18.72■□□□□ 0.59
PCDH1-203ENST00000394536 AIDAQ96BJ3 306 aa18.72■□□□□ 0.59
PCDH1-203ENST00000394536 POLR3GO15318 223 aaPredicted RBP18.72■□□□□ 0.59
PCDH1-203ENST00000394536 SYKP43405 635 aa18.72■□□□□ 0.59
PCDH1-203ENST00000394536 GSDMDP57764 484 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms