RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 IDH1O75874 414 aaKnown RBP13.29□□□□□ -0.28
TCOF1-203ENST00000394269 CTSWP56202 376 aa13.29□□□□□ -0.28
TCOF1-203ENST00000394269 ITPK1Q13572 414 aa13.29□□□□□ -0.28
TCOF1-203ENST00000394269 SUSD4Q5VX71 490 aa13.29□□□□□ -0.28
TCOF1-203ENST00000394269 MPHOSPH8Q99549 860 aa13.29□□□□□ -0.28
TCOF1-203ENST00000394269 SEC31BQ9NQW1 1179 aa13.29□□□□□ -0.28
TCOF1-203ENST00000394269 AKAP2Q9Y2D5 859 aa13.29□□□□□ -0.28
TCOF1-203ENST00000394269 TTLL5Q6EMB2 1281 aa13.28□□□□□ -0.28
TCOF1-203ENST00000394269 INTS4Q96HW7 963 aaKnown RBP13.28□□□□□ -0.28
TCOF1-203ENST00000394269 NSFL1CQ9UNZ2 370 aaKnown RBP13.28□□□□□ -0.28
TCOF1-203ENST00000394269 APPP05067 770 aa13.28□□□□□ -0.28
TCOF1-203ENST00000394269 SYT1P21579 422 aa13.28□□□□□ -0.28
TCOF1-203ENST00000394269 IQSEC3Q9UPP2 1182 aaPredicted RBP13.28□□□□□ -0.28
TCOF1-203ENST00000394269 ADAMTS7Q9UKP4 1686 aa13.28□□□□□ -0.28
TCOF1-203ENST00000394269 FIBPO43427 364 aa13.27□□□□□ -0.28
TCOF1-203ENST00000394269 BRD1O95696 1058 aa13.27□□□□□ -0.28
TCOF1-203ENST00000394269 IL6STP40189 918 aaPredicted RBP13.27□□□□□ -0.28
TCOF1-203ENST00000394269 DDX11Q96FC9 970 aa13.27□□□□□ -0.28
TCOF1-203ENST00000394269 UBN2Q6ZU65 1347 aa13.27□□□□□ -0.28
TCOF1-203ENST00000394269 NPHP1O15259 732 aa13.27□□□□□ -0.28
TCOF1-203ENST00000394269 CYP21A2P08686 494 aa13.27□□□□□ -0.28
TCOF1-203ENST00000394269 TRIM28Q13263 835 aaKnown RBP13.27□□□□□ -0.28
TCOF1-203ENST00000394269 NEK1Q96PY6 1258 aa13.27□□□□□ -0.28
TCOF1-203ENST00000394269 STX6O43752 255 aa13.27□□□□□ -0.29
TCOF1-203ENST00000394269 GRPEL1Q9HAV7 217 aa13.27□□□□□ -0.29
TCOF1-203ENST00000394269 WDR33Q9C0J8 1336 aaKnown RBP13.26□□□□□ -0.29
TCOF1-203ENST00000394269 PKD1L3Q7Z443 1732 aa13.26□□□□□ -0.29
TCOF1-203ENST00000394269 EPB41L2O43491 1005 aaKnown RBP13.26□□□□□ -0.29
TCOF1-203ENST00000394269 PDE8AO60658 829 aa13.26□□□□□ -0.29
TCOF1-203ENST00000394269 KLHL40Q2TBA0 621 aa13.26□□□□□ -0.29
TCOF1-203ENST00000394269 LARP1BQ659C4 914 aaKnown RBP13.26□□□□□ -0.29
TCOF1-203ENST00000394269 FAM173BQ6P4H8 233 aa13.26□□□□□ -0.29
TCOF1-203ENST00000394269 INTS5Q6P9B9 1019 aaKnown RBP13.26□□□□□ -0.29
TCOF1-203ENST00000394269 STK11IPQ8N1F8 1099 aa13.26□□□□□ -0.29
TCOF1-203ENST00000394269 BRF1Q92994 677 aa13.26□□□□□ -0.29
TCOF1-203ENST00000394269 ZNF609O15014 1411 aa13.26□□□□□ -0.29
TCOF1-203ENST00000394269 CRYBG1Q9Y4K1 1723 aa13.26□□□□□ -0.29
TCOF1-203ENST00000394269 COL15A1P39059 1388 aa13.26□□□□□ -0.29
TCOF1-203ENST00000394269 ABCC6O95255 1503 aa13.26□□□□□ -0.29
TCOF1-203ENST00000394269 TNS2Q63HR2 1409 aa13.26□□□□□ -0.29
TCOF1-203ENST00000394269 RNF113AO15541 343 aaKnown RBP13.26□□□□□ -0.29
TCOF1-203ENST00000394269 PTMSP20962 102 aa13.26□□□□□ -0.29
TCOF1-203ENST00000394269 Q6ZUG5 572 aa13.26□□□□□ -0.29
TCOF1-203ENST00000394269 GPT2Q8TD30 523 aa13.26□□□□□ -0.29
TCOF1-203ENST00000394269 OSBP2Q969R2 916 aa13.26□□□□□ -0.29
TCOF1-203ENST00000394269 CNPY2Q9Y2B0 182 aa13.26□□□□□ -0.29
TCOF1-203ENST00000394269 CIAO1O76071 339 aa13.25□□□□□ -0.29
TCOF1-203ENST00000394269 RPS6KB1P23443 525 aa13.25□□□□□ -0.29
TCOF1-203ENST00000394269 RAB11FIP4Q86YS3 637 aa13.25□□□□□ -0.29
TCOF1-203ENST00000394269 UTP14AQ9BVJ6 771 aaKnown RBP13.25□□□□□ -0.29
TCOF1-203ENST00000394269 CDCA7Q9BWT1 371 aaPredicted RBP13.25□□□□□ -0.29
TCOF1-203ENST00000394269 GADD45BO75293 160 aaPredicted RBP13.25□□□□□ -0.29
TCOF1-203ENST00000394269 CSF1RP07333 972 aa13.25□□□□□ -0.29
TCOF1-203ENST00000394269 CCT2P78371 535 aaKnown RBP13.25□□□□□ -0.29
TCOF1-203ENST00000394269 ROBO1Q9Y6N7 1651 aa13.25□□□□□ -0.29
TCOF1-203ENST00000394269 SPATA31A5Q5VU36 1347 aa13.25□□□□□ -0.29
TCOF1-203ENST00000394269 SPATA31A7Q8IWB4 1347 aa13.25□□□□□ -0.29
TCOF1-203ENST00000394269 SH3TC1Q8TE82 1336 aa13.25□□□□□ -0.29
TCOF1-203ENST00000394269 PARP4Q9UKK3 1724 aaKnown RBP13.25□□□□□ -0.29
TCOF1-203ENST00000394269 M0R2C6 588 aa13.25□□□□□ -0.29
TCOF1-203ENST00000394269 EIF5P55010 431 aaKnown RBP13.25□□□□□ -0.29
TCOF1-203ENST00000394269 U3KPZ7 1027 aaPredicted RBP13.25□□□□□ -0.29
TCOF1-203ENST00000394269 PLEKHG2Q9H7P9 1386 aa13.24□□□□□ -0.29
TCOF1-203ENST00000394269 SYCE3A1L190 88 aa13.24□□□□□ -0.29
TCOF1-203ENST00000394269 HSPD1P10809 573 aaKnown RBP13.24□□□□□ -0.29
TCOF1-203ENST00000394269 SLC9C2Q5TAH2 1124 aa13.24□□□□□ -0.29
TCOF1-203ENST00000394269 USP48Q86UV5 1035 aa13.24□□□□□ -0.29
TCOF1-203ENST00000394269 RIPOR2Q9Y4F9 1068 aa13.24□□□□□ -0.29
TCOF1-203ENST00000394269 PALLDQ8WX93 1383 aa13.24□□□□□ -0.29
TCOF1-203ENST00000394269 PHKA1P46020 1223 aa13.24□□□□□ -0.29
TCOF1-203ENST00000394269 ZSCAN31Q96LW9 406 aaPredicted RBP13.24□□□□□ -0.29
TCOF1-203ENST00000394269 TM6SF1Q9BZW5 370 aa13.24□□□□□ -0.29
TCOF1-203ENST00000394269 KDM4AO75164 1064 aa13.23□□□□□ -0.29
TCOF1-203ENST00000394269 ZSCAN22P10073 491 aaPredicted RBP13.23□□□□□ -0.29
TCOF1-203ENST00000394269 MRE11P49959 708 aa13.23□□□□□ -0.29
TCOF1-203ENST00000394269 RNF214Q8ND24 703 aa13.23□□□□□ -0.29
TCOF1-203ENST00000394269 PUS7LQ9H0K6 701 aaKnown RBP13.23□□□□□ -0.29
TCOF1-203ENST00000394269 GPR108Q9NPR9 543 aa13.23□□□□□ -0.29
TCOF1-203ENST00000394269 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.23□□□□□ -0.29
TCOF1-203ENST00000394269 MAST3O60307 1309 aa13.23□□□□□ -0.29
TCOF1-203ENST00000394269 MED23Q9ULK4 1368 aa13.23□□□□□ -0.29
TCOF1-203ENST00000394269 MCAMP43121 646 aa13.23□□□□□ -0.29
TCOF1-203ENST00000394269 ZSCAN23Q3MJ62 389 aa13.23□□□□□ -0.29
TCOF1-203ENST00000394269 SH2B1Q9NRF2 756 aaPredicted RBP13.23□□□□□ -0.29
TCOF1-203ENST00000394269 AFDNP55196 1824 aaKnown RBP13.23□□□□□ -0.29
TCOF1-203ENST00000394269 JAK2O60674 1132 aa13.23□□□□□ -0.29
TCOF1-203ENST00000394269 PDE8BO95263 885 aa13.23□□□□□ -0.29
TCOF1-203ENST00000394269 DNM1Q05193 864 aaKnown RBP13.23□□□□□ -0.29
TCOF1-203ENST00000394269 HMG20BQ9P0W2 317 aa13.23□□□□□ -0.29
TCOF1-203ENST00000394269 THRAP3Q9Y2W1 955 aaKnown RBP13.23□□□□□ -0.29
TCOF1-203ENST00000394269 PHF14O94880 888 aa13.22□□□□□ -0.29
TCOF1-203ENST00000394269 TOB2Q14106 344 aaPredicted RBP13.22□□□□□ -0.29
TCOF1-203ENST00000394269 STOX1Q6ZVD7 989 aa13.22□□□□□ -0.29
TCOF1-203ENST00000394269 USP21Q9UK80 565 aa13.22□□□□□ -0.29
TCOF1-203ENST00000394269 ERVV-1B6SEH8 477 aa13.22□□□□□ -0.29
TCOF1-203ENST00000394269 APOBRQ0VD83 1088 aa13.22□□□□□ -0.29
TCOF1-203ENST00000394269 ZMYM1Q5SVZ6 1142 aa13.22□□□□□ -0.29
TCOF1-203ENST00000394269 ZNF34Q8IZ26 560 aa13.22□□□□□ -0.29
TCOF1-203ENST00000394269 KRT32Q14532 448 aa13.22□□□□□ -0.29
TCOF1-203ENST00000394269 CCDC102BQ68D86 513 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms