RNA–Protein interactions for RNA: ENST00000391813.5

SHANK1-203, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 1 (best) BASIC

Gene SHANK1, Length 4,785 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-203ENST00000391813 VPS18Q9P253 973 aa22.54■■□□□ 1.2
SHANK1-203ENST00000391813 ZFP91Q96JP5 570 aaPredicted RBP22.54■■□□□ 1.2
SHANK1-203ENST00000391813 POLKQ9UBT6 870 aa22.54■■□□□ 1.2
SHANK1-203ENST00000391813 IKQ13123 557 aaPredicted RBP22.54■■□□□ 1.2
SHANK1-203ENST00000391813 CAVIN4Q5BKX8 364 aa22.54■■□□□ 1.2
SHANK1-203ENST00000391813 MAATS1Q7Z4T9 603 aa22.54■■□□□ 1.2
SHANK1-203ENST00000391813 BCCIPQ9P287 314 aaKnown RBP eCLIP22.54■■□□□ 1.2
SHANK1-203ENST00000391813 FSD2A1L4K1 749 aa22.54■■□□□ 1.2
SHANK1-203ENST00000391813 HDXQ7Z353 690 aa22.54■■□□□ 1.2
SHANK1-203ENST00000391813 TSG101Q99816 390 aa22.54■■□□□ 1.2
SHANK1-203ENST00000391813 LMBRD1Q9NUN5 540 aa22.54■■□□□ 1.2
SHANK1-203ENST00000391813 TSHZ3Q63HK5 1081 aa22.53■■□□□ 1.2
SHANK1-203ENST00000391813 MEIS3Q99687 375 aa22.53■■□□□ 1.2
SHANK1-203ENST00000391813 GOLIM4O00461 696 aa22.53■■□□□ 1.2
SHANK1-203ENST00000391813 CYLC1P35663 651 aaPredicted RBP22.53■■□□□ 1.2
SHANK1-203ENST00000391813 EIF4A2Q14240 407 aaKnown RBP22.53■■□□□ 1.2
SHANK1-203ENST00000391813 SSRP1Q08945 709 aaKnown RBP22.53■■□□□ 1.2
SHANK1-203ENST00000391813 IDH1O75874 414 aaKnown RBP22.53■■□□□ 1.2
SHANK1-203ENST00000391813 OTUD6BQ8N6M0 293 aa22.53■■□□□ 1.2
SHANK1-203ENST00000391813 GTF3C6Q969F1 213 aa22.53■■□□□ 1.2
SHANK1-203ENST00000391813 CCDC178Q5BJE1 867 aa22.52■■□□□ 1.2
SHANK1-203ENST00000391813 FAM114A1Q8IWE2 563 aa22.52■■□□□ 1.2
SHANK1-203ENST00000391813 TAOK3Q9H2K8 898 aa22.52■■□□□ 1.2
SHANK1-203ENST00000391813 POLR3DP05423 398 aaPredicted RBP22.52■■□□□ 1.2
SHANK1-203ENST00000391813 IARSP41252 1262 aaKnown RBP22.52■■□□□ 1.2
SHANK1-203ENST00000391813 TDRD12Q587J7 1177 aaKnown RBP22.52■■□□□ 1.2
SHANK1-203ENST00000391813 SLC12A7Q9Y666 1083 aa22.52■■□□□ 1.2
SHANK1-203ENST00000391813 ATL3Q6DD88 541 aa22.52■■□□□ 1.2
SHANK1-203ENST00000391813 CTCFLQ8NI51 663 aaPredicted RBP22.52■■□□□ 1.2
SHANK1-203ENST00000391813 BRF1Q92994 677 aa22.52■■□□□ 1.2
SHANK1-203ENST00000391813 RBM5P52756 815 aaKnown RBP eCLIP22.51■■□□□ 1.19
SHANK1-203ENST00000391813 PPP1R12BO60237 982 aaPredicted RBP22.51■■□□□ 1.19
SHANK1-203ENST00000391813 SSBP05455 408 aaKnown RBP eCLIP22.51■■□□□ 1.19
SHANK1-203ENST00000391813 CETN2P41208 172 aa22.51■■□□□ 1.19
SHANK1-203ENST00000391813 RBM8AQ9Y5S9 174 aaKnown RBP22.51■■□□□ 1.19
SHANK1-203ENST00000391813 CDC5LQ99459 802 aaKnown RBP22.51■■□□□ 1.19
SHANK1-203ENST00000391813 PIK3R4Q99570 1358 aa22.51■■□□□ 1.19
SHANK1-203ENST00000391813 PER1O15534 1290 aaPredicted RBP22.51■■□□□ 1.19
SHANK1-203ENST00000391813 ARFGAP2Q8N6H7 521 aa22.51■■□□□ 1.19
SHANK1-203ENST00000391813 ANKRD18BA2A2Z9 1011 aa22.5■■□□□ 1.19
SHANK1-203ENST00000391813 GOLGA8AA7E2F4 631 aa22.5■■□□□ 1.19
SHANK1-203ENST00000391813 EVCP57679 992 aa22.5■■□□□ 1.19
SHANK1-203ENST00000391813 KRBA2Q6ZNG9 492 aa22.5■■□□□ 1.19
SHANK1-203ENST00000391813 BCL2L12Q9HB09 334 aa22.5■■□□□ 1.19
SHANK1-203ENST00000391813 SEPT11Q9NVA2 429 aaKnown RBP22.5■■□□□ 1.19
SHANK1-203ENST00000391813 MTIF2P46199 727 aaKnown RBP22.5■■□□□ 1.19
SHANK1-203ENST00000391813 LRP2BPQ9P2M1 347 aa22.5■■□□□ 1.19
SHANK1-203ENST00000391813 TNNQ9UQP3 1299 aa22.5■■□□□ 1.19
SHANK1-203ENST00000391813 AK2P54819 239 aa22.5■■□□□ 1.19
SHANK1-203ENST00000391813 TUBB2AQ13885 445 aa22.5■■□□□ 1.19
SHANK1-203ENST00000391813 DCAF5Q96JK2 942 aa22.5■■□□□ 1.19
SHANK1-203ENST00000391813 TUBB2BQ9BVA1 445 aa22.5■■□□□ 1.19
SHANK1-203ENST00000391813 LMOD1P29536 600 aaPredicted RBP22.49■■□□□ 1.19
SHANK1-203ENST00000391813 LTKP29376 864 aa22.49■■□□□ 1.19
SHANK1-203ENST00000391813 ISM2Q6H9L7 571 aa22.49■■□□□ 1.19
SHANK1-203ENST00000391813 MAGI3Q5TCQ9 1506 aa22.49■■□□□ 1.19
SHANK1-203ENST00000391813 EDC4Q6P2E9 1401 aaKnown RBP22.49■■□□□ 1.19
SHANK1-203ENST00000391813 ATP8B2P98198 1209 aa22.49■■□□□ 1.19
SHANK1-203ENST00000391813 ORAI2Q96SN7 254 aa22.49■■□□□ 1.19
SHANK1-203ENST00000391813 NAPBQ9H115 298 aa22.49■■□□□ 1.19
SHANK1-203ENST00000391813 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.49■■□□□ 1.19
SHANK1-203ENST00000391813 CWC25Q9NXE8 425 aaPredicted RBP22.49■■□□□ 1.19
SHANK1-203ENST00000391813 SAMD1Q6SPF0 538 aaPredicted RBP22.49■■□□□ 1.19
SHANK1-203ENST00000391813 ZBTB3Q9H5J0 574 aa22.48■■□□□ 1.19
SHANK1-203ENST00000391813 ZCCHC11Q5TAX3 1644 aaKnown RBP22.48■■□□□ 1.19
SHANK1-203ENST00000391813 A0A1W2PP64 1363 aa22.48■■□□□ 1.19
SHANK1-203ENST00000391813 BMP15O95972 392 aa22.48■■□□□ 1.19
SHANK1-203ENST00000391813 ATRIPQ8WXE1 791 aa22.48■■□□□ 1.19
SHANK1-203ENST00000391813 PLEKHG3A1L390 1219 aa22.48■■□□□ 1.19
SHANK1-203ENST00000391813 UTP14CQ5TAP6 766 aaKnown RBP22.48■■□□□ 1.19
SHANK1-203ENST00000391813 BTG4Q9NY30 223 aa22.48■■□□□ 1.19
SHANK1-203ENST00000391813 CCDC85AQ96PX6 553 aaPredicted RBP22.47■■□□□ 1.19
SHANK1-203ENST00000391813 IFNKQ9P0W0 207 aa22.47■■□□□ 1.19
SHANK1-203ENST00000391813 RTL1A6NKG5 1358 aa22.47■■□□□ 1.19
SHANK1-203ENST00000391813 NBPF14Q5TI25 921 aa22.47■■□□□ 1.19
SHANK1-203ENST00000391813 C16orf71Q8IYS4 520 aaPredicted RBP22.47■■□□□ 1.19
SHANK1-203ENST00000391813 RNF41Q9H4P4 317 aaPredicted RBP22.47■■□□□ 1.19
SHANK1-203ENST00000391813 A6NNZ2 444 aa22.47■■□□□ 1.19
SHANK1-203ENST00000391813 TUBB8Q3ZCM7 444 aa22.47■■□□□ 1.19
SHANK1-203ENST00000391813 RMND1Q9NWS8 449 aa22.47■■□□□ 1.19
SHANK1-203ENST00000391813 ZMYM4Q5VZL5 1548 aa22.47■■□□□ 1.19
SHANK1-203ENST00000391813 PCDH11XQ9BZA7 1347 aa22.46■■□□□ 1.19
SHANK1-203ENST00000391813 PCDH11YQ9BZA8 1340 aa22.46■■□□□ 1.19
SHANK1-203ENST00000391813 AKR1B10O60218 316 aa22.46■■□□□ 1.19
SHANK1-203ENST00000391813 GBP6Q6ZN66 633 aa22.46■■□□□ 1.19
SHANK1-203ENST00000391813 RAB34Q9BZG1 259 aa22.46■■□□□ 1.19
SHANK1-203ENST00000391813 NLRP1Q9C000 1473 aa22.46■■□□□ 1.19
SHANK1-203ENST00000391813 MAP3K19Q56UN5 1328 aa22.46■■□□□ 1.19
SHANK1-203ENST00000391813 HOXC9P31274 260 aa22.46■■□□□ 1.19
SHANK1-203ENST00000391813 ANKIB1Q9P2G1 1089 aa22.46■■□□□ 1.19
SHANK1-203ENST00000391813 KDM5DQ9BY66 1539 aa22.46■■□□□ 1.19
SHANK1-203ENST00000391813 KRT83P78385 493 aa22.46■■□□□ 1.19
SHANK1-203ENST00000391813 PPP2R3AQ06190 1150 aa22.46■■□□□ 1.19
SHANK1-203ENST00000391813 CCDC121Q6ZUS5 278 aa22.46■■□□□ 1.19
SHANK1-203ENST00000391813 DDX46Q7L014 1031 aaKnown RBP22.46■■□□□ 1.19
SHANK1-203ENST00000391813 SLC5A1P13866 664 aa22.45■■□□□ 1.18
SHANK1-203ENST00000391813 ATP6V1AP38606 617 aa22.45■■□□□ 1.18
SHANK1-203ENST00000391813 PPM1EQ8WY54 764 aa22.45■■□□□ 1.18
SHANK1-203ENST00000391813 GOPCQ9HD26 462 aa22.45■■□□□ 1.18
SHANK1-203ENST00000391813 RNF216Q9NWF9 866 aaPredicted RBP22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms