RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 CRYBG1Q9Y4K1 1723 aa20.88■□□□□ 0.93
SQSTM1-202ENST00000389805 ERICH4A6NGS2 130 aa20.88■□□□□ 0.93
SQSTM1-202ENST00000389805 SMTNL1A8MU46 457 aa20.88■□□□□ 0.93
SQSTM1-202ENST00000389805 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.88■□□□□ 0.93
SQSTM1-202ENST00000389805 ATP6V1DQ9Y5K8 247 aa20.88■□□□□ 0.93
SQSTM1-202ENST00000389805 LIG1P18858 919 aa20.88■□□□□ 0.93
SQSTM1-202ENST00000389805 FAM200AQ8TCP9 573 aa20.88■□□□□ 0.93
SQSTM1-202ENST00000389805 MAP4K1Q92918 833 aa20.88■□□□□ 0.93
SQSTM1-202ENST00000389805 ZSWIM6Q9HCJ5 1215 aa20.88■□□□□ 0.93
SQSTM1-202ENST00000389805 PDE4CQ08493 712 aa20.87■□□□□ 0.93
SQSTM1-202ENST00000389805 LMBR1LQ6UX01 489 aa20.87■□□□□ 0.93
SQSTM1-202ENST00000389805 COPRSQ9NQ92 184 aa20.87■□□□□ 0.93
SQSTM1-202ENST00000389805 CYP46A1Q9Y6A2 500 aa20.87■□□□□ 0.93
SQSTM1-202ENST00000389805 MRVI1Q9Y6F6 885 aa20.87■□□□□ 0.93
SQSTM1-202ENST00000389805 TYRO3Q06418 890 aa20.87■□□□□ 0.93
SQSTM1-202ENST00000389805 MTMR6Q9Y217 621 aa20.87■□□□□ 0.93
SQSTM1-202ENST00000389805 TNNI3KQ59H18 835 aa20.86■□□□□ 0.93
SQSTM1-202ENST00000389805 DBNDD2Q9BQY9 259 aa20.86■□□□□ 0.93
SQSTM1-202ENST00000389805 FPGT-TNNI3KV9GXZ4 949 aa20.86■□□□□ 0.93
SQSTM1-202ENST00000389805 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.86■□□□□ 0.93
SQSTM1-202ENST00000389805 NPHP1O15259 732 aa20.86■□□□□ 0.93
SQSTM1-202ENST00000389805 ST3GAL1Q11201 340 aa20.86■□□□□ 0.93
SQSTM1-202ENST00000389805 ME3Q16798 604 aa20.86■□□□□ 0.93
SQSTM1-202ENST00000389805 ANO6Q4KMQ2 910 aa20.86■□□□□ 0.93
SQSTM1-202ENST00000389805 ZCRB1Q8TBF4 217 aaKnown RBP20.86■□□□□ 0.93
SQSTM1-202ENST00000389805 LMTK3Q96Q04 1460 aa20.86■□□□□ 0.93
SQSTM1-202ENST00000389805 SLC27A2O14975 620 aa20.85■□□□□ 0.93
SQSTM1-202ENST00000389805 ZKSCAN1P17029 563 aaPredicted RBP20.85■□□□□ 0.93
SQSTM1-202ENST00000389805 ZSCAN25Q6NSZ9 544 aa20.85■□□□□ 0.93
SQSTM1-202ENST00000389805 STRN4Q9NRL3 753 aa20.85■□□□□ 0.93
SQSTM1-202ENST00000389805 MAP3K11Q16584 847 aa20.85■□□□□ 0.93
SQSTM1-202ENST00000389805 VPS53Q5VIR6 699 aa20.85■□□□□ 0.93
SQSTM1-202ENST00000389805 PLBD2Q8NHP8 589 aa20.85■□□□□ 0.93
SQSTM1-202ENST00000389805 KIF18AQ8NI77 898 aa20.85■□□□□ 0.93
SQSTM1-202ENST00000389805 DNAJC2Q99543 621 aaKnown RBP20.85■□□□□ 0.93
SQSTM1-202ENST00000389805 ZBTB3Q9H5J0 574 aa20.85■□□□□ 0.93
SQSTM1-202ENST00000389805 CBX8Q9HC52 389 aa20.85■□□□□ 0.93
SQSTM1-202ENST00000389805 GABPB1Q06547 395 aaPredicted RBP20.85■□□□□ 0.93
SQSTM1-202ENST00000389805 NUP62CLQ9H1M0 184 aa20.85■□□□□ 0.93
SQSTM1-202ENST00000389805 ST7Q9NRC1 585 aa20.85■□□□□ 0.93
SQSTM1-202ENST00000389805 CASP7P55210 303 aa20.84■□□□□ 0.93
SQSTM1-202ENST00000389805 TAF3Q5VWG9 929 aa20.84■□□□□ 0.93
SQSTM1-202ENST00000389805 TTC6Q86TZ1 520 aa20.84■□□□□ 0.93
SQSTM1-202ENST00000389805 KCNB2Q92953 911 aa20.84■□□□□ 0.93
SQSTM1-202ENST00000389805 SEC62Q99442 399 aaKnown RBP20.84■□□□□ 0.93
SQSTM1-202ENST00000389805 CDK11BP21127 795 aaKnown RBP20.84■□□□□ 0.93
SQSTM1-202ENST00000389805 DCCP43146 1447 aa20.84■□□□□ 0.93
SQSTM1-202ENST00000389805 RABL6Q3YEC7 729 aaPredicted RBP20.84■□□□□ 0.93
SQSTM1-202ENST00000389805 SLFNL1Q499Z3 407 aa20.84■□□□□ 0.93
SQSTM1-202ENST00000389805 TPCN1Q9ULQ1 816 aa20.84■□□□□ 0.93
SQSTM1-202ENST00000389805 CCDC129Q6ZRS4 1044 aa20.83■□□□□ 0.93
SQSTM1-202ENST00000389805 CACTINQ8WUQ7 758 aaKnown RBP20.83■□□□□ 0.93
SQSTM1-202ENST00000389805 TERF2Q15554 542 aa20.82■□□□□ 0.92
SQSTM1-202ENST00000389805 ZNF330Q9Y3S2 320 aaPredicted RBP20.82■□□□□ 0.92
SQSTM1-202ENST00000389805 ARID5BQ14865 1188 aa20.82■□□□□ 0.92
SQSTM1-202ENST00000389805 TM6SF1Q9BZW5 370 aa20.82■□□□□ 0.92
SQSTM1-202ENST00000389805 DACT1Q9NYF0 836 aa20.82■□□□□ 0.92
SQSTM1-202ENST00000389805 TFIP11Q9UBB9 837 aaKnown RBP20.82■□□□□ 0.92
SQSTM1-202ENST00000389805 CPDO75976 1380 aa20.82■□□□□ 0.92
SQSTM1-202ENST00000389805 WDR17Q8IZU2 1322 aa20.82■□□□□ 0.92
SQSTM1-202ENST00000389805 HIP1O00291 1037 aa20.82■□□□□ 0.92
SQSTM1-202ENST00000389805 CCDC144BQ3MJ40 725 aa20.82■□□□□ 0.92
SQSTM1-202ENST00000389805 KMT5BQ4FZB7 885 aa20.82■□□□□ 0.92
SQSTM1-202ENST00000389805 DDX46Q7L014 1031 aaKnown RBP20.82■□□□□ 0.92
SQSTM1-202ENST00000389805 CCDC144CPQ8IYA2 1237 aa20.82■□□□□ 0.92
SQSTM1-202ENST00000389805 TRERF1Q96PN7 1200 aa20.82■□□□□ 0.92
SQSTM1-202ENST00000389805 TNMDQ9H2S6 317 aa20.82■□□□□ 0.92
SQSTM1-202ENST00000389805 NAP1L2Q9ULW6 460 aaPredicted RBP20.82■□□□□ 0.92
SQSTM1-202ENST00000389805 MORC2Q9Y6X9 1032 aaPredicted RBP20.82■□□□□ 0.92
SQSTM1-202ENST00000389805 USP27XA6NNY8 438 aa20.81■□□□□ 0.92
SQSTM1-202ENST00000389805 FOXO4P98177 505 aa20.81■□□□□ 0.92
SQSTM1-202ENST00000389805 CEP135Q66GS9 1140 aa20.81■□□□□ 0.92
SQSTM1-202ENST00000389805 MRC1P22897 1456 aa20.81■□□□□ 0.92
SQSTM1-202ENST00000389805 COL15A1P39059 1388 aa20.81■□□□□ 0.92
SQSTM1-202ENST00000389805 ZNF75DP51815 510 aa20.81■□□□□ 0.92
SQSTM1-202ENST00000389805 TIMM10P62072 90 aa20.81■□□□□ 0.92
SQSTM1-202ENST00000389805 ZNF594Q96JF6 807 aaPredicted RBP20.81■□□□□ 0.92
SQSTM1-202ENST00000389805 NEUROD6Q96NK8 337 aa20.81■□□□□ 0.92
SQSTM1-202ENST00000389805 CLIP2Q9UDT6 1046 aa20.81■□□□□ 0.92
SQSTM1-202ENST00000389805 ZNF215Q9UL58 517 aaPredicted RBP20.81■□□□□ 0.92
SQSTM1-202ENST00000389805 ATP5JP18859 108 aa20.8■□□□□ 0.92
SQSTM1-202ENST00000389805 IRX5P78411 483 aaPredicted RBP20.8■□□□□ 0.92
SQSTM1-202ENST00000389805 TAF5LO75529 589 aa20.8■□□□□ 0.92
SQSTM1-202ENST00000389805 KRT222Q8N1A0 295 aa20.8■□□□□ 0.92
SQSTM1-202ENST00000389805 DNAJC25Q9H1X3 360 aa20.79■□□□□ 0.92
SQSTM1-202ENST00000389805 TRMT1Q9NXH9 659 aaKnown RBP20.79■□□□□ 0.92
SQSTM1-202ENST00000389805 SLAIN2Q9P270 581 aa20.79■□□□□ 0.92
SQSTM1-202ENST00000389805 PAXBP1Q9Y5B6 917 aa20.79■□□□□ 0.92
SQSTM1-202ENST00000389805 PCDH11XQ9BZA7 1347 aa20.79■□□□□ 0.92
SQSTM1-202ENST00000389805 PCDH11YQ9BZA8 1340 aa20.79■□□□□ 0.92
SQSTM1-202ENST00000389805 MED23Q9ULK4 1368 aa20.79■□□□□ 0.92
SQSTM1-202ENST00000389805 GOLGA6L4A6NEF3 574 aa20.79■□□□□ 0.92
SQSTM1-202ENST00000389805 H7C1W4 665 aa20.79■□□□□ 0.92
SQSTM1-202ENST00000389805 PLCD3Q8N3E9 789 aa20.79■□□□□ 0.92
SQSTM1-202ENST00000389805 STK3Q13188 491 aa20.78■□□□□ 0.92
SQSTM1-202ENST00000389805 CDC37L1Q7L3B6 337 aa20.78■□□□□ 0.92
SQSTM1-202ENST00000389805 SNRKQ9NRH2 765 aa20.78■□□□□ 0.92
SQSTM1-202ENST00000389805 SYCP1Q15431 976 aa20.78■□□□□ 0.92
SQSTM1-202ENST00000389805 BLOC1S2Q6QNY1 142 aa20.78■□□□□ 0.92
SQSTM1-202ENST00000389805 ELF2Q15723 593 aa20.77■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms