RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 TNS3Q68CZ2 1445 aa16.29■□□□□ 0.2
SDC1-202ENST00000381150 MRC1P22897 1456 aa16.29■□□□□ 0.2
SDC1-202ENST00000381150 H3BQV1 296 aa16.29■□□□□ 0.2
SDC1-202ENST00000381150 GABPB1Q06547 395 aaPredicted RBP16.29■□□□□ 0.2
SDC1-202ENST00000381150 IFFO2Q5TF58 517 aa16.29■□□□□ 0.2
SDC1-202ENST00000381150 C9orf78Q9NZ63 289 aaPredicted RBP16.29■□□□□ 0.2
SDC1-202ENST00000381150 CYP27B1O15528 508 aa16.29■□□□□ 0.2
SDC1-202ENST00000381150 SGSM2O43147 1006 aa16.29■□□□□ 0.2
SDC1-202ENST00000381150 TATP17735 454 aaPredicted RBP16.29■□□□□ 0.2
SDC1-202ENST00000381150 TRIM34Q9BYJ4 488 aa16.29■□□□□ 0.2
SDC1-202ENST00000381150 TCHHQ07283 1943 aa16.28■□□□□ 0.2
SDC1-202ENST00000381150 TMEM87AQ8NBN3 555 aa16.28■□□□□ 0.2
SDC1-202ENST00000381150 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.28■□□□□ 0.2
SDC1-202ENST00000381150 SPATA31A3Q5VYP0 1347 aa16.28■□□□□ 0.2
SDC1-202ENST00000381150 GRM8O00222 908 aa16.28■□□□□ 0.2
SDC1-202ENST00000381150 ERCC6LQ2NKX8 1250 aa16.28■□□□□ 0.2
SDC1-202ENST00000381150 ZNF397Q8NF99 534 aaPredicted RBP16.28■□□□□ 0.2
SDC1-202ENST00000381150 SUCLG2Q96I99 432 aa16.28■□□□□ 0.2
SDC1-202ENST00000381150 TMX1Q9H3N1 280 aa16.28■□□□□ 0.2
SDC1-202ENST00000381150 TTC41PQ6P2S7 1318 aa16.27■□□□□ 0.2
SDC1-202ENST00000381150 ZNF496Q96IT1 587 aaPredicted RBP16.27■□□□□ 0.2
SDC1-202ENST00000381150 NOL10Q9BSC4 688 aaKnown RBP16.27■□□□□ 0.2
SDC1-202ENST00000381150 PA2G4Q9UQ80 394 aaKnown RBP16.27■□□□□ 0.2
SDC1-202ENST00000381150 RAD50Q92878 1312 aa16.27■□□□□ 0.2
SDC1-202ENST00000381150 ZRSR1Q15695 479 aaKnown RBP16.27■□□□□ 0.2
SDC1-202ENST00000381150 CHRNA2Q15822 529 aa16.27■□□□□ 0.2
SDC1-202ENST00000381150 CADPS2Q86UW7 1296 aa16.27■□□□□ 0.2
SDC1-202ENST00000381150 IFNL2Q8IZJ0 200 aa16.27■□□□□ 0.2
SDC1-202ENST00000381150 CPDO75976 1380 aa16.27■□□□□ 0.19
SDC1-202ENST00000381150 GLI3P10071 1580 aa16.26■□□□□ 0.19
SDC1-202ENST00000381150 CCDC69A6NI79 296 aa16.26■□□□□ 0.19
SDC1-202ENST00000381150 AIMP1Q12904 312 aaKnown RBP16.26■□□□□ 0.19
SDC1-202ENST00000381150 LARP1Q6PKG0 1096 aaKnown RBP16.26■□□□□ 0.19
SDC1-202ENST00000381150 SASH1O94885 1247 aa16.25■□□□□ 0.19
SDC1-202ENST00000381150 DDX58O95786 925 aaKnown RBP16.25■□□□□ 0.19
SDC1-202ENST00000381150 COL9A3Q14050 684 aaPredicted RBP16.25■□□□□ 0.19
SDC1-202ENST00000381150 LSG1Q9H089 658 aaKnown RBP16.25■□□□□ 0.19
SDC1-202ENST00000381150 BICC1Q9H694 974 aaKnown RBP16.25■□□□□ 0.19
SDC1-202ENST00000381150 TPCN1Q9ULQ1 816 aa16.25■□□□□ 0.19
SDC1-202ENST00000381150 SMC2O95347 1197 aa16.25■□□□□ 0.19
SDC1-202ENST00000381150 GNL2Q13823 731 aaKnown RBP16.25■□□□□ 0.19
SDC1-202ENST00000381150 CCAR2Q8N163 923 aaKnown RBP16.25■□□□□ 0.19
SDC1-202ENST00000381150 DCAF5Q96JK2 942 aa16.25■□□□□ 0.19
SDC1-202ENST00000381150 SYT10Q6XYQ8 523 aa16.24■□□□□ 0.19
SDC1-202ENST00000381150 TTC14Q96N46 770 aa16.24■□□□□ 0.19
SDC1-202ENST00000381150 HDAC5Q9UQL6 1122 aa16.24■□□□□ 0.19
SDC1-202ENST00000381150 NEURL1BA8MQ27 555 aa16.24■□□□□ 0.19
SDC1-202ENST00000381150 GLRX3O76003 335 aaKnown RBP16.24■□□□□ 0.19
SDC1-202ENST00000381150 CLASRPQ8N2M8 674 aaKnown RBP16.24■□□□□ 0.19
SDC1-202ENST00000381150 NEK11Q8NG66 645 aa16.24■□□□□ 0.19
SDC1-202ENST00000381150 LRRC2Q9BYS8 371 aa16.24■□□□□ 0.19
SDC1-202ENST00000381150 GUCY1B3Q02153 619 aa16.23■□□□□ 0.19
SDC1-202ENST00000381150 COPS6Q7L5N1 327 aa16.23■□□□□ 0.19
SDC1-202ENST00000381150 LRRC8AQ8IWT6 810 aa16.23■□□□□ 0.19
SDC1-202ENST00000381150 XAGE3Q8WTP9 111 aa16.23■□□□□ 0.19
SDC1-202ENST00000381150 IFIT2P09913 472 aaKnown RBP16.23■□□□□ 0.19
SDC1-202ENST00000381150 ISM2Q6H9L7 571 aa16.23■□□□□ 0.19
SDC1-202ENST00000381150 MORC2Q9Y6X9 1032 aaPredicted RBP16.23■□□□□ 0.19
SDC1-202ENST00000381150 MYL6BP14649 208 aa16.23■□□□□ 0.19
SDC1-202ENST00000381150 GCKRQ14397 625 aa16.23■□□□□ 0.19
SDC1-202ENST00000381150 RUFY2Q8WXA3 655 aa16.23■□□□□ 0.19
SDC1-202ENST00000381150 METTL22Q9BUU2 404 aaPredicted RBP16.23■□□□□ 0.19
SDC1-202ENST00000381150 FTOQ9C0B1 505 aaKnown RBP eCLIP16.23■□□□□ 0.19
SDC1-202ENST00000381150 ECHDC1Q9NTX5 307 aa16.23■□□□□ 0.19
SDC1-202ENST00000381150 SLU7O95391 586 aaKnown RBP16.22■□□□□ 0.19
SDC1-202ENST00000381150 RIC3Q7Z5B4 369 aa16.22■□□□□ 0.19
SDC1-202ENST00000381150 ERC1Q8IUD2 1116 aa16.22■□□□□ 0.19
SDC1-202ENST00000381150 CALCOCO1Q9P1Z2 691 aa16.22■□□□□ 0.19
SDC1-202ENST00000381150 JAK2O60674 1132 aa16.22■□□□□ 0.19
SDC1-202ENST00000381150 EPHA10Q5JZY3 1008 aa16.22■□□□□ 0.19
SDC1-202ENST00000381150 C11orf57Q6ZUT1 292 aaPredicted RBP16.22■□□□□ 0.19
SDC1-202ENST00000381150 LEO1Q8WVC0 666 aaPredicted RBP16.22■□□□□ 0.19
SDC1-202ENST00000381150 BIN1O00499 593 aa16.21■□□□□ 0.19
SDC1-202ENST00000381150 SNRPA1P09661 255 aaKnown RBP16.21■□□□□ 0.19
SDC1-202ENST00000381150 CSB-PGBD3P0DP91 1061 aa16.21■□□□□ 0.19
SDC1-202ENST00000381150 ARHGAP29Q52LW3 1261 aa16.21■□□□□ 0.19
SDC1-202ENST00000381150 BLOC1S2Q6QNY1 142 aa16.21■□□□□ 0.19
SDC1-202ENST00000381150 EAF2Q96CJ1 260 aaPredicted RBP16.21■□□□□ 0.19
SDC1-202ENST00000381150 FAM227BQ96M60 508 aa16.21■□□□□ 0.19
SDC1-202ENST00000381150 SCAND2PQ9GZW5 306 aaPredicted RBP16.21■□□□□ 0.19
SDC1-202ENST00000381150 PARP4Q9UKK3 1724 aaKnown RBP16.21■□□□□ 0.19
SDC1-202ENST00000381150 RBM8AQ9Y5S9 174 aaKnown RBP16.21■□□□□ 0.19
SDC1-202ENST00000381150 RBM6P78332 1123 aaKnown RBP16.21■□□□□ 0.19
SDC1-202ENST00000381150 PTPN21Q16825 1174 aa16.21■□□□□ 0.19
SDC1-202ENST00000381150 SIL1Q9H173 461 aa16.21■□□□□ 0.19
SDC1-202ENST00000381150 SNW1Q13573 536 aaKnown RBP16.21■□□□□ 0.19
SDC1-202ENST00000381150 SDF4Q9BRK5 362 aa16.21■□□□□ 0.19
SDC1-202ENST00000381150 DDX19AQ9NUU7 478 aaKnown RBP16.21■□□□□ 0.19
SDC1-202ENST00000381150 HSPA2P54652 639 aa16.2■□□□□ 0.18
SDC1-202ENST00000381150 HNRNPH2P55795 449 aaKnown RBP16.2■□□□□ 0.18
SDC1-202ENST00000381150 BRINP3Q76B58 766 aa16.2■□□□□ 0.18
SDC1-202ENST00000381150 LRRN4CLQ8ND94 238 aa16.2■□□□□ 0.18
SDC1-202ENST00000381150 ZSCAN31Q96LW9 406 aaPredicted RBP16.2■□□□□ 0.18
SDC1-202ENST00000381150 PDCP20941 246 aa16.2■□□□□ 0.18
SDC1-202ENST00000381150 SKIDA1Q1XH10 827 aa16.2■□□□□ 0.18
SDC1-202ENST00000381150 ANKRD13DQ6ZTN6 518 aa16.2■□□□□ 0.18
SDC1-202ENST00000381150 AOPEPQ8N6M6 819 aa16.2■□□□□ 0.18
SDC1-202ENST00000381150 MNS1Q8NEH6 495 aa16.2■□□□□ 0.18
SDC1-202ENST00000381150 CCDC8Q9H0W5 538 aaPredicted RBP16.2■□□□□ 0.18
SDC1-202ENST00000381150 SH2B1Q9NRF2 756 aaPredicted RBP16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms